jgi.p|Nanoce1779_2|578732, mRNA_2010 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578732
Unique Name	mRNA_2010
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3565
Alignment location	scaffold_4:556211..559775 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578818
Track	FilteredModels2
ProteinId	578732

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:556211..559775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578732	gene_2010	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578732	mRNA_2010-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2010	CDS_2010	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:556211..559775+
coding sequence from alignment at scaffold_4:556211..559775+

mRNA sequence

>mRNA_2010 ID=mRNA_2010|Name=jgi.p|Nanoce1779_2|578732|organism=Nannochloropsis oceanica|type=mRNA|length=3565bp
ACAGGAAGGCGCGCTTTTACAAGCCGGGCAAGTTCCTTCAAGACCAGCAG
TTCCCGAAGCCAGGAGAGGCGCGCGGATCTCTTGACGAGCTGGGGGGCAA
TGGGTCGCAACCTGGTGGCCTCTGCCACCGACGACATCGACTATGTAAGT
ACATACCGCAAAGGACACATGAACGAGATTGCCTTAACGTGTATTGGGGA
AAGTGGCGGTCTCCGACCAAGTCGACGTCAATAGGAGCGAAGATTTGTCC
TTTCTTGCAGGGCCCGTCGAGCGGCACGTCCAGACGGTTTCCAAAGGCTT
GACCGTGCGCACGCCGGCATGCCTGGAGGGAAAGGCGGGGAAGAGACGCG
TGAAGGAGACGAGAGTGCACTGTGGAGTGTAGTTGGCAATGTCCACCCCC
GCTTTATTCCGGAACAAACGTTGGCCCCAAAGTTTACTCTAGGCATCTTC
TACAGGCACACTATTTTCGCCTTTGGGTGTGCTTGACCGGAGCTTGGCTG
CATGTGTGCGTTAACAAGCAGGCTGAACTTGTCTGCTGTCATGCCACGTG
CTTGCTTTTCCCTTTCTTGGCTGTCTGCCAGCTTCTCCCCCCCCCCACCT
CCCCACGGGTCCGTAATTAGGTGACCTCCCCTCTAGACCATCTACTAAGT
CCCCATACTCCCCTCCCCCCGTCCTTTTTACCCTATGCTACAATAAGCCT
TTCAACACAGACGTCAGAAGCAGTCCTTGGCGCGTCCCCCGCGAAAATGG
CCCAGCCGCAGCCAATGCTGCCCCCAACACCTCCGCTTTTACCGAGAACT
CTTTTCGCAAACACACGAAGGGCATAATACCAGCCGATTCCATCCCCTCT
ACACTTCCTGCCACATCCTCAGTGAAAGCAGCCGCAGTCATGGGCGGGAG
GGCTTCGCCTGGTCGTAAGTCGTCACCTTCCTCGGACTTAACCTCCACCT
CCTCCATCTCCTCCATTTCAGCACATGGCCCCTCCTCCATCTGGTCAGCC
ACTGCTGCGGCTGCCATTGCCGCTGCATCTTTTAAAGGGAAAACCAGCAG
CACCAACAGAAGCGTTCATTCTCCTCGTCCTCCCAAGCCCCTCCGTCCAC
ACACCCCTACCTCCAATACTACAGACGGCAGTCTTCCCACCGCCAATTCT
CGATTGGACCCCCGTTTCCATTCATTTCGGCGTGCCGACCCCTTGGCTAC
CTCCTCCTTCACCGACAATGGTGGAGATGACGACATTCTGCCTTTTAACG
TCGAATCAGGGCAAGCAGGGGGGGAGGACGCGTTTGGATTAGGGGGGCAC
CCCGGTTTTTTTTCCAAGGATTCGTACAAAATCCTCCCTCACCGACGAGA
GCCACCGAAAGGGTGGATGGACAACTTGCCTCCGTTTCTGAATCCTCGCA
AATTGACGCGTCGACAGCAAGCGCTGTGCCTGATGCTTACTGTGGCCGTC
CTTCTTTTCCTGATCGGCATTGTCATTTCAGCGGCAAGGCGGACAGGCAT
CGAAGCCCTTGGCCCTGGGGGGGATGACGGCGCGGCGGGGACGGGCATTT
ATAGGAATCTCTTCACAGAGGTGATGGATAAGTCTATTGTTGAGACGGAC
ACGAAATTGGAGGGGGTATGGGACAACTATTTCAAGGGGGATATCGAAAA
GACAGGGTTGTATGTTGAAGTGGAACCAAACATGGCTCAGATTATTAATA
CGGAGAGTAATGTGGTGACTTCTGAGGGGATCAGCTATGGGATGATAACG
TGTGTACATTTACAGAAGCAGGAGGCGTTCAACCGGCTGTGGAACTGGGC
CCGCTTTCACATGCAGCACACGGCGGGCACGTACGAGACATTTTTCGCCT
GGCGTGTCACGCGCGGTGGCCTACTCATCGATGCGAAAGACGTGGTCCCC
GCCCCGGACGCAGAAGCTTACATTGCAACAGCTCTCATAGCAGCACATCG
GAAATGGGGCTCCAGCATTGGGTATCCATACAAAGCGGAAGCAATGCGCC
TCATCCACGCCATGGGAAACTCGAAAAAAGGCTTTTTCACCAAAGACGGG
AAAGCCACCTTCAACCCGACTGACTGGGGGCTCAGGCACTCCAACCCGTC
ATACCACCTCCCCCACTTCTACGAAGCTTTCGCCCGATTCCTCAAAAATG
AAGGCGACCCACGCGCGGCCAAGTTCTGGTCCAAGTCCGCGATGCAAAGC
CGGAAGTTCTTCCACGTGGCCGCTGATCCCAAAACGGGGCTCATTCCTGA
CTACACCACGTTGGAAGGGAAGGGAGCGTCGGATCCTAATTTGGAGGGGC
ATAGTAATTTTCAGTGGGATGCGTGGAGAGCCCCGGCAAATGTGGCAGTG
GACTGGGCGTGGTGGAACATGGACGGGTGGCAACAGAAGTATGCAGATCG
TTTCTTGGGTTTTTTTGCAAGTCAAGGACCGAAGTACGGGAGTCAATTCA
CAATGGATGGGAAGCTTGCCGACAACAACTCAGGGCATGATGCGGGTCTT
GTGAGCATGAATGCGGTGGTGGCATTGGCGACGAAAGATGAAAAGTTGAT
GTCTTCATTTGTGAAGGAATTGTGGGAGCAGGACATGCCGGAGGGAAAGG
GGCGGTACTACCCTGCCATGCTGTATATGATGAGTTTGTTGCATTGTTCG
GGGAGGTTCCAGGCTTATTTTTAGGGATGACGACGAGGAAGGGAACATGG
GTAAAAGGCGTGTCGTATATTGCTCTGTCCCTTCTTCCCTTTTGTCGAAG
CGGGGAAAGGGGTGAGGAGGGAGGGGGAGACAGAGGCGGGACCTTCATTT
TTGGCTTTTAAACGTCACACTTGTTCCCTTACATTGAGGGAATACGTAGT
GATGGATCATGTAGTGCGTGTGTATATCTGTTGATTATGTGACAAAGAGT
GCGTGTGGGTCTGGGTGCGTGCCGCTCCGTAAGAGGAGGCGAGGCAGGCA
TATCTGAAAAGAGATACGGTGAGACCGGTGTGGAGAAAATGAATGAGGAG
GCAGGAGGAAGCCGGCAGTACTCTTTGCTTCGCATAGATCAAGTGAATCG
GAAAAAAGACGACGGGGTGCATTTTTCACTCTCAGGAAAAAGGAGAGTTA
CGAAGACAGGTGTAAAAAAGAGCAGTGTTTTTTATATTAGCTCGGGAGGT
GGTTTAGGGGGGACGAGAACACGTCCGCAATAGAAGGGGGTAATGAACTA
GTATAAGGAAGTGTTTGACGAGGACGGGCATCTATCTGTATTGAATTCGT
ATCGTGTACCAGCGCGTGTGTGCGTTTTAGAAGGATACTCCACAACCAGG
GGCAGCGGCAGTTGTGGTAGTAGACGTTGTTGTTGTAGTTGTAGTACTTG
TTGTTATTCTTATTACAGTGGTGGTGGTAGTGATAGTAGTCGAAAAGATA
AGACAAGCATATATCAAAGCAGTCACACTGAACAGTGTAAGGGGAAGGGA
GGAAGGGAGGGAGGGACGGACGGAAGATAGCGTTTACGGCAACGACGACG
AGATAAGAGCAACCACCAAAAACAGCGGGAACAAAAACGATGTGTGCAGT
AGATGCAGATCATGG

protein sequence of jgi.p|Nanoce1779_2|578732

>mRNA_2010-protein ID=mRNA_2010-protein|Name=jgi.p|Nanoce1779_2|578732|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MGGRASPGRKSSPSSDLTSTSSISSISAHGPSSIWSATAAAAIAAASFKG
KTSSTNRSVHSPRPPKPLRPHTPTSNTTDGSLPTANSRLDPRFHSFRRAD
PLATSSFTDNGGDDDILPFNVESGQAGGEDAFGLGGHPGFFSKDSYKILP
HRREPPKGWMDNLPPFLNPRKLTRRQQALCLMLTVAVLLFLIGIVISAAR
RTGIEALGPGGDDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKG
DIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRL
WNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALI
AAHRKWGSSIGYPYKAEAMRLIHAMGNSKKGFFTKDGKATFNPTDWGLRH
SNPSYHLPHFYEAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTG
LIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQK
YADRFLGFFASQGPKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKD
EKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAYF*

mRNA from alignment at scaffold_4:556211..559775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2010 ID=mRNA_2010|Name=jgi.p|Nanoce1779_2|578732|organism=Nannochloropsis oceanica|type=mRNA|length=3565bp|location=Sequence derived from alignment at scaffold_4:556211..559775+ (Nannochloropsis oceanica)
ACAGGAAGGCGCGCTTTTACAAGCCGGGCAAGTTCCTTCAAGACCAGCAG
TTCCCGAAGCCAGGAGAGGCGCGCGGATCTCTTGACGAGCTGGGGGGCAA
TGGGTCGCAACCTGGTGGCCTCTGCCACCGACGACATCGACTATGTAAGT
ACATACCGCAAAGGACACATGAACGAGATTGCCTTAACGTGTATTGGGGA
AAGTGGCGGTCTCCGACCAAGTCGACGTCAATAGGAGCGAAGATTTGTCC
TTTCTTGCAGGGCCCGTCGAGCGGCACGTCCAGACGGTTTCCAAAGGCTT
GACCGTGCGCACGCCGGCATGCCTGGAGGGAAAGGCGGGGAAGAGACGCG
TGAAGGAGACGAGAGTGCACTGTGGAGTGTAGTTGGCAATGTCCACCCCC
GCTTTATTCCGGAACAAACGTTGGCCCCAAAGTTTACTCTAGGCATCTTC
TACAGGCACACTATTTTCGCCTTTGGGTGTGCTTGACCGGAGCTTGGCTG
CATGTGTGCGTTAACAAGCAGGCTGAACTTGTCTGCTGTCATGCCACGTG
CTTGCTTTTCCCTTTCTTGGCTGTCTGCCAGCTTCTCCCCCCCCCCACCT
CCCCACGGGTCCGTAATTAGGTGACCTCCCCTCTAGACCATCTACTAAGT
CCCCATACTCCCCTCCCCCCGTCCTTTTTACCCTATGCTACAATAAGCCT
TTCAACACAGACGTCAGAAGCAGTCCTTGGCGCGTCCCCCGCGAAAATGG
CCCAGCCGCAGCCAATGCTGCCCCCAACACCTCCGCTTTTACCGAGAACT
CTTTTCGCAAACACACGAAGGGCATAATACCAGCCGATTCCATCCCCTCT
ACACTTCCTGCCACATCCTCAGTGAAAGCAGCCGCAGTCATGGGCGGGAG
GGCTTCGCCTGGTCGTAAGTCGTCACCTTCCTCGGACTTAACCTCCACCT
CCTCCATCTCCTCCATTTCAGCACATGGCCCCTCCTCCATCTGGTCAGCC
ACTGCTGCGGCTGCCATTGCCGCTGCATCTTTTAAAGGGAAAACCAGCAG
CACCAACAGAAGCGTTCATTCTCCTCGTCCTCCCAAGCCCCTCCGTCCAC
ACACCCCTACCTCCAATACTACAGACGGCAGTCTTCCCACCGCCAATTCT
CGATTGGACCCCCGTTTCCATTCATTTCGGCGTGCCGACCCCTTGGCTAC
CTCCTCCTTCACCGACAATGGTGGAGATGACGACATTCTGCCTTTTAACG
TCGAATCAGGGCAAGCAGGGGGGGAGGACGCGTTTGGATTAGGGGGGCAC
CCCGGTTTTTTTTCCAAGGATTCGTACAAAATCCTCCCTCACCGACGAGA
GCCACCGAAAGGGTGGATGGACAACTTGCCTCCGTTTCTGAATCCTCGCA
AATTGACGCGTCGACAGCAAGCGCTGTGCCTGATGCTTACTGTGGCCGTC
CTTCTTTTCCTGATCGGCATTGTCATTTCAGCGGCAAGGCGGACAGGCAT
CGAAGCCCTTGGCCCTGGGGGGGATGACGGCGCGGCGGGGACGGGCATTT
ATAGGAATCTCTTCACAGAGGTGATGGATAAGTCTATTGTTGAGACGGAC
ACGAAATTGGAGGGGGTATGGGACAACTATTTCAAGGGGGATATCGAAAA
GACAGGGTTGTATGTTGAAGTGGAACCAAACATGGCTCAGATTATTAATA
CGGAGAGTAATGTGGTGACTTCTGAGGGGATCAGCTATGGGATGATAACG
TGTGTACATTTACAGAAGCAGGAGGCGTTCAACCGGCTGTGGAACTGGGC
CCGCTTTCACATGCAGCACACGGCGGGCACGTACGAGACATTTTTCGCCT
GGCGTGTCACGCGCGGTGGCCTACTCATCGATGCGAAAGACGTGGTCCCC
GCCCCGGACGCAGAAGCTTACATTGCAACAGCTCTCATAGCAGCACATCG
GAAATGGGGCTCCAGCATTGGGTATCCATACAAAGCGGAAGCAATGCGCC
TCATCCACGCCATGGGAAACTCGAAAAAAGGCTTTTTCACCAAAGACGGG
AAAGCCACCTTCAACCCGACTGACTGGGGGCTCAGGCACTCCAACCCGTC
ATACCACCTCCCCCACTTCTACGAAGCTTTCGCCCGATTCCTCAAAAATG
AAGGCGACCCACGCGCGGCCAAGTTCTGGTCCAAGTCCGCGATGCAAAGC
CGGAAGTTCTTCCACGTGGCCGCTGATCCCAAAACGGGGCTCATTCCTGA
CTACACCACGTTGGAAGGGAAGGGAGCGTCGGATCCTAATTTGGAGGGGC
ATAGTAATTTTCAGTGGGATGCGTGGAGAGCCCCGGCAAATGTGGCAGTG
GACTGGGCGTGGTGGAACATGGACGGGTGGCAACAGAAGTATGCAGATCG
TTTCTTGGGTTTTTTTGCAAGTCAAGGACCGAAGTACGGGAGTCAATTCA
CAATGGATGGGAAGCTTGCCGACAACAACTCAGGGCATGATGCGGGTCTT
GTGAGCATGAATGCGGTGGTGGCATTGGCGACGAAAGATGAAAAGTTGAT
GTCTTCATTTGTGAAGGAATTGTGGGAGCAGGACATGCCGGAGGGAAAGG
GGCGGTACTACCCTGCCATGCTGTATATGATGAGTTTGTTGCATTGTTCG
GGGAGGTTCCAGGCTTATTTTTAGGGATGACGACGAGGAAGGGAACATGG
GTAAAAGGCGTGTCGTATATTGCTCTGTCCCTTCTTCCCTTTTGTCGAAG
CGGGGAAAGGGGTGAGGAGGGAGGGGGAGACAGAGGCGGGACCTTCATTT
TTGGCTTTTAAACGTCACACTTGTTCCCTTACATTGAGGGAATACGTAGT
GATGGATCATGTAGTGCGTGTGTATATCTGTTGATTATGTGACAAAGAGT
GCGTGTGGGTCTGGGTGCGTGCCGCTCCGTAAGAGGAGGCGAGGCAGGCA
TATCTGAAAAGAGATACGGTGAGACCGGTGTGGAGAAAATGAATGAGGAG
GCAGGAGGAAGCCGGCAGTACTCTTTGCTTCGCATAGATCAAGTGAATCG
GAAAAAAGACGACGGGGTGCATTTTTCACTCTCAGGAAAAAGGAGAGTTA
CGAAGACAGGTGTAAAAAAGAGCAGTGTTTTTTATATTAGCTCGGGAGGT
GGTTTAGGGGGGACGAGAACACGTCCGCAATAGAAGGGGGTAATGAACTA
GTATAAGGAAGTGTTTGACGAGGACGGGCATCTATCTGTATTGAATTCGT
ATCGTGTACCAGCGCGTGTGTGCGTTTTAGAAGGATACTCCACAACCAGG
GGCAGCGGCAGTTGTGGTAGTAGACGTTGTTGTTGTAGTTGTAGTACTTG
TTGTTATTCTTATTACAGTGGTGGTGGTAGTGATAGTAGTCGAAAAGATA
AGACAAGCATATATCAAAGCAGTCACACTGAACAGTGTAAGGGGAAGGGA
GGAAGGGAGGGAGGGACGGACGGAAGATAGCGTTTACGGCAACGACGACG
AGATAAGAGCAACCACCAAAAACAGCGGGAACAAAAACGATGTGTGCAGT
AGATGCAGATCATGG

Coding sequence (CDS) from alignment at scaffold_4:556211..559775+

>mRNA_2010 ID=mRNA_2010|Name=jgi.p|Nanoce1779_2|578732|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at scaffold_4:556211..559775+ (Nannochloropsis oceanica)
ATGGGCGGGAGGGCTTCGCCTGGTCGTAAGTCGTCACCTTCCTCGGACTT
AACCTCCACCTCCTCCATCTCCTCCATTTCAGCACATGGCCCCTCCTCCA
TCTGGTCAGCCACTGCTGCGGCTGCCATTGCCGCTGCATCTTTTAAAGGG
AAAACCAGCAGCACCAACAGAAGCGTTCATTCTCCTCGTCCTCCCAAGCC
CCTCCGTCCACACACCCCTACCTCCAATACTACAGACGGCAGTCTTCCCA
CCGCCAATTCTCGATTGGACCCCCGTTTCCATTCATTTCGGCGTGCCGAC
CCCTTGGCTACCTCCTCCTTCACCGACAATGGTGGAGATGACGACATTCT
GCCTTTTAACGTCGAATCAGGGCAAGCAGGGGGGGAGGACGCGTTTGGAT
TAGGGGGGCACCCCGGTTTTTTTTCCAAGGATTCGTACAAAATCCTCCCT
CACCGACGAGAGCCACCGAAAGGGTGGATGGACAACTTGCCTCCGTTTCT
GAATCCTCGCAAATTGACGCGTCGACAGCAAGCGCTGTGCCTGATGCTTA
CTGTGGCCGTCCTTCTTTTCCTGATCGGCATTGTCATTTCAGCGGCAAGG
CGGACAGGCATCGAAGCCCTTGGCCCTGGGGGGGATGACGGCGCGGCGGG
GACGGGCATTTATAGGAATCTCTTCACAGAGGTGATGGATAAGTCTATTG
TTGAGACGGACACGAAATTGGAGGGGGTATGGGACAACTATTTCAAGGGG
GATATCGAAAAGACAGGGTTGTATGTTGAAGTGGAACCAAACATGGCTCA
GATTATTAATACGGAGAGTAATGTGGTGACTTCTGAGGGGATCAGCTATG
GGATGATAACGTGTGTACATTTACAGAAGCAGGAGGCGTTCAACCGGCTG
TGGAACTGGGCCCGCTTTCACATGCAGCACACGGCGGGCACGTACGAGAC
ATTTTTCGCCTGGCGTGTCACGCGCGGTGGCCTACTCATCGATGCGAAAG
ACGTGGTCCCCGCCCCGGACGCAGAAGCTTACATTGCAACAGCTCTCATA
GCAGCACATCGGAAATGGGGCTCCAGCATTGGGTATCCATACAAAGCGGA
AGCAATGCGCCTCATCCACGCCATGGGAAACTCGAAAAAAGGCTTTTTCA
CCAAAGACGGGAAAGCCACCTTCAACCCGACTGACTGGGGGCTCAGGCAC
TCCAACCCGTCATACCACCTCCCCCACTTCTACGAAGCTTTCGCCCGATT
CCTCAAAAATGAAGGCGACCCACGCGCGGCCAAGTTCTGGTCCAAGTCCG
CGATGCAAAGCCGGAAGTTCTTCCACGTGGCCGCTGATCCCAAAACGGGG
CTCATTCCTGACTACACCACGTTGGAAGGGAAGGGAGCGTCGGATCCTAA
TTTGGAGGGGCATAGTAATTTTCAGTGGGATGCGTGGAGAGCCCCGGCAA
ATGTGGCAGTGGACTGGGCGTGGTGGAACATGGACGGGTGGCAACAGAAG
TATGCAGATCGTTTCTTGGGTTTTTTTGCAAGTCAAGGACCGAAGTACGG
GAGTCAATTCACAATGGATGGGAAGCTTGCCGACAACAACTCAGGGCATG
ATGCGGGTCTTGTGAGCATGAATGCGGTGGTGGCATTGGCGACGAAAGAT
GAAAAGTTGATGTCTTCATTTGTGAAGGAATTGTGGGAGCAGGACATGCC
GGAGGGAAAGGGGCGGTACTACCCTGCCATGCTGTATATGATGAGTTTGT
TGCATTGTTCGGGGAGGTTCCAGGCTTATTTTTAG

Synonyms

Publications