jgi.p|Nanoce1779_2|550835, mRNA_201 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550835
Unique NamemRNA_201
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length980
Alignment locationscaffold_3:499596..501321 -

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Properties
Property NameValue
TranscriptId550921
TrackFilteredModels2
ProteinId550835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:499596..501321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550835gene_201Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550835mRNA_201-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_201CDS_201Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_201 ID=mRNA_201|Name=jgi.p|Nanoce1779_2|550835|organism=Nannochloropsis oceanica|type=mRNA|length=980bp
CAGAACGTTATCTCCCTCCCGCCTCGTTGTTCCCTCGTCTTCTTCGCCGC
GCGCCTGCACCACTTCACTCCCGACAAAACAAATTATAACAAAACAAAAG
GATCCATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAAG
CGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCCT
GCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAGG
AAATGACGGAGGTGCCCCCTGAGTATTTGGTGGCGTTGTCGGTGCACCTG
CAAAACATTCTACGGAACAAGCGCTGTCTCTTGGCCTACATGCAGCATCG
CTTAGACAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGATTC
CCACGCACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTTGCC
TCTTACGACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCTCGA
TCTTACGGGCTCTATCTTGCCGCCCAAGGAAATGTGCATCGAAGTGCGCG
TGCTGGCAGACTGCGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTG
AAGAAGGGTACGAACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGAT
AAGGCAGGGTTTGCTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCA
CCATGTAGAAGTGGACGGATAGGGGTGAGCGGGGAGGAAAGATGACTGGT
CAAATTCAGAATATGTATATGCAGTATAACATGCCTTCAAAAGGGATAAA
AAGTAATTCAAATCACTTGGAATCCGCAAGTTTTGCTATTGAAAGAGTGC
TGTAGCAGAAGGCCTGTCCACTCGCGGCCGACCCTCGCCTCTTCCGTTCG
CGTCGCCGGCGCAATGACCACTACCGCTCCGGTACAGACGTATGCCCCGA
GATAACTGCCTGCACAAATTTTATTGAGCC
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protein sequence of jgi.p|Nanoce1779_2|550835

>mRNA_201-protein ID=mRNA_201-protein|Name=jgi.p|Nanoce1779_2|550835|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MNFGQKGRELLQELKRSDWLPLYSEDAVSRCLLECQGHMAQIRPALAQEM
TEVPPEYLVALSVHLQNILRNKRCLLAYMQHRLDKVRELRWDTGGAVIPT
HLQRKLSAKETEFFASYDKLLSEYMGHYPLLDLTGSILPPKEMCIEVRVL
ADCGEVMTDQGPVNLKKGTNHFLRRADVEGLIRQGLLQHVPSASSAQSTM
*
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mRNA from alignment at scaffold_3:499596..501321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_201 ID=mRNA_201|Name=jgi.p|Nanoce1779_2|550835|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at scaffold_3:499596..501321- (Nannochloropsis oceanica)
CAGAACGTTATCTCCCTCCCGCCTCGTTGTTCCCTCGTCTTCTTCGCCGC
GCGCCTGCACCACTTCACTCCCGACAAAACAAATTATAACAAAACAAAAG
GATCCATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAAG
CGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCCT
GCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAGG
AAATGGTGAGTGAATGCCGGTGGGATATGATGGAGAATGTATCCGGGCAC
ATCTCAGTGTGCGATGATGGCGGGAAATGGGTATGGACAAGGTCGGCTGC
TGCCTTCATCAGTCGCCCGGATCATGCCAAAAGAATGTGTATGGGCGCAG
AGCGTACCAGATGGATGGGGTTGACCTGTAATAACGTGGGCAGCTCTTTC
TCTGGCCCGCCACTTCACGAACGATTCAAGTGTGTATACTTTTAATTTGA
TTCATATCCATACCAATCGTCACAGACGGAGGTGCCCCCTGAGTATTTGG
TGGCGTTGTCGGTGCACCTGCAAAACATTCTACGGAACAAGCGCTGTCTC
TTGGCCTACATGCAGGTACAAAAGGAGGATAGTGGGAAGTAAGAGATAGT
TGGGGTTTGTATAGTTGGATGAACTTGGGTGTTCGGAAGATATGCTGGTT
TTCTCCGTTGGGAAGGGAATGACACACACGAGAAACAACCATTATAATTC
TGTTTCAGAGTGCAGGCAGACACACGCGCAAATTTCGTGTACAAGAAGGC
CAACCAGTGCGGCACGATTATTGTTACAACATTTCTAAATGCTATGGTAT
CTTAATTGAGAAAAAAGAGAAATAACCGCGGATGCATACATTTGTATATA
ATGTTATCCACTCCCCTTTTTTCCGTCCCCTCGTACCTCCATTACGCCCT
TCCCTTCCATACCCCACCACACTAGCATCGCTTAGACAAGGTGCGGGAAT
TGAGATGGGATACGGGTGGAGCTGTGATTCCCACGCACCTGCAACGGAAG
CTGTCTGCGAAAGAAACCGAGTTCTTTGCCTCTTACGACAAGCTCCTGTC
TGAATACATGGGCCATTACCCTTTGCTCGATCTTACGGGCTCTATCTTGG
TACGTACGTAAAAAGGTGGAGACGGAAAGTATATATTTCGTAAATCTTCA
ATAATTTCATTGTTGCTTTGTCAGAAATCTCATTTCCCGTCATCCTTCAA
CCTCCCCCTCCTCAGCCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCT
GGCAGACTGCGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTGAAGA
AGGGTACGAACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGG
CAGGGTTTGCTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCAT
GTAGAAGTGGACGGATAGGGGTGAGCGGGGAGGAAAGATGACTGGTCAAA
TTCAGAATATGTATATGCAGTATAACATGCCTTCAAAAGGGATAAAAAGT
AATTCAAATCACTTGGAATCCGCAAGTTTTGCTATTGAAAGAGTGCTGTA
GCAGAAGGCCTGTCCACTCGCGGCCGACCCTCGCCTCTTCCGTTCGCGTC
GCCGGCGCAATGACCACTACCGCTCCGGTACAGACGTATGCCCCGAGATA
ACTGCCTGCACAAATTTTATTGAGCC
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Coding sequence (CDS) from alignment at scaffold_3:499596..501321-

>mRNA_201 ID=mRNA_201|Name=jgi.p|Nanoce1779_2|550835|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_3:499596..501321- (Nannochloropsis oceanica)
CCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCTGGCAGACTGCGGCGA
AGTTATGACCGACCAAGGGCCCGTCAATTTGAAGAAGGGTACGAACCATT
TCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGGCAGGGTTTGCTTCAG
CATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCATGTAGCATCGCTTAGA
CAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGATTCCCACGC
ACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTTGCCTCTTAC
GACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCTCGATCTTAC
GGGCTCTATCTTGACGGAGGTGCCCCCTGAGTATTTGGTGGCGTTGTCGG
TGCACCTGCAAAACATTCTACGGAACAAGCGCTGTCTCTTGGCCTACATG
CAGATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAAGCG
GAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCCTGC
TGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAGGAA
ATGCCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCTGGCAGACTGCGG
CGAAGTTATGACCGACCAAGGGCCCGTCAATTTGAAGAAGGGTACGAACC
ATTTCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGGCAGGGTTTGCTT
CAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCATGTAGCATCGCTT
AGACAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGATTCCCA
CGCACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTTGCCTCT
TACGACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCTCGATCT
TACGGGCTCTATCTTGACGGAGGTGCCCCCTGAGTATTTGGTGGCGTTGT
CGGTGCACCTGCAAAACATTCTACGGAACAAGCGCTGTCTCTTGGCCTAC
ATGCAGATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAA
GCGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCC
TGCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAG
GAAATGCCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCTGGCAGACTG
CGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTGAAGAAGGGTACGA
ACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGGCAGGGTTTG
CTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCATGTAGCATCG
CTTAGACAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGATTC
CCACGCACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTTGCC
TCTTACGACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCTCGA
TCTTACGGGCTCTATCTTGACGGAGGTGCCCCCTGAGTATTTGGTGGCGT
TGTCGGTGCACCTGCAAAACATTCTACGGAACAAGCGCTGTCTCTTGGCC
TACATGCAGATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATT
GAAGCGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGT
GCCTGCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCG
CAGGAAATGCCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCTGGCAGA
CTGCGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTGAAGAAGGGTA
CGAACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGGCAGGGT
TTGCTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCATGTAGCA
TCGCTTAGACAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGA
TTCCCACGCACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTT
GCCTCTTACGACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCT
CGATCTTACGGGCTCTATCTTGACGGAGGTGCCCCCTGAGTATTTGGTGG
CGTTGTCGGTGCACCTGCAAAACATTCTACGGAACAAGCGCTGTCTCTTG
GCCTACATGCAGATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGA
ATTGAAGCGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCC
GGTGCCTGCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTG
GCGCAGGAAATG
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Synonyms
Publications