Properties
| Property Name | Value |
|---|
| TranscriptId | 578810 |
| Track | FilteredModels2 |
| ProteinId | 578724 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:551155..553362 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2008 ID=mRNA_2008|Name=jgi.p|Nanoce1779_2|578724|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
CCCCTGCACACTTAATGAACATGGCACAACAAAAACTACGTCATAGCGTG
ATGAAGCTTGAAGCAATCAGTGGTTTTCTCCTAGGTGCTATATTGGTCCC
AGGCGCATCATCTTCAACAGATCCCCTAACCCTTGTTCCTCTCACCCGCT
TTCACAGCCGCACACGAAACAAAGGCGCATCACATTATTTCCTTTTCCAC
CAACGAATGCCACAGCATCGTCGGTTGTCCTTCATGATGGCTGTCGTCGC
AACCACCGCCACAACCACCCTCCTCCTCCTTGGCCGCGCCTCCGCCACCA
CAGCATCCGTCCTGCGTCCCCGGCGCCCGAGTCTGCTACCTGCATTCCTC
CCTCCCTTCCCCCTCACAACCACAGCCATCCGTGGTGTTCGTTCTCGCCC
TGGTCCTGCGCTTGGCGGCAGCCTAGCCAATTCCATTCGGCTAGCATGGG
TCAAGGTTCTTGGCTCGGCGCTAGCGGAGGAAGTCGACCCCGGCGAGGTG
GAAGGAACGGATCTACGTGTGCTCAAGTACCCCGACCCCCGTCTTCGAGC
CTCCAACGCAGAAATCACAGACTTTGGCCCGGAAGTGGCGGCCTTGGCAA
AGGATATGTTTAAAGTGATGTACGCGATGAACGGGGTAGGATTGGCAGCA
CCGCAAGTAGGTGTGAATCAACGTCTGATGGTTTTTAACCCCATGGGGGA
TAAAGTGAAGTGGCTGAACGAGGTGGTGTTGTGCAACCCTGTGATTGTTG
AGAGGTCGGGCAAGACGGAAGTTGCAGAGGAGGGGTGTTTGTCGTTTCCG
GGTATGGCTGGCGATGTTGAGCGCTCGCTCGTTATTAAGGTGACATTCCA
AAACGCCAAGGGAAAGACTGTCACCAAGAAATTTCGTGATTGGGAGGCGC
GCATTTTCCAGCATGAGTACGACCATTTGGACGGCGTAGTGTATATTGAT
AGGCTCTTGCCAGAGTCGAAGGAGAAGGTGCAGCCGGTGTTAGACAAGTT
GGTTGCTGACTTTGGCCCGGGCGGAGCTTTGTGAGGAGGTTTGGGATGTC
TCACAGAAGATGTGTTGCAGTGCGCAGGCATTTTTTTTAACAGACCGAGT
CAATCCCGACATGTAATAAACTTCTCAGTGAAAGAAGAGAACGCAAACGA
ATGACTAACACCGTGGAGTTACCTGTTGCTATCTTTCCCCTTGCCCGGTG
CAGTAATGGGCCAAGCTCAAGCGAGGCGTGATCATGCCCCACTCTTTTAC
TTTGCTTTGCCTGCCCGAAACAAGCATGACTTACCCCACTCTGACTAACC
AGTGCATGCTGTACTCTCGGAAAAAGTTGTAGCATCGACGACGTGCGGCC
TGCCTCGCTGTTGTTGCAATAGATAGTCTCTTCATCGATATCGTTCATGA
ACCCCAGTCCACGCCTCATCGACAACGCCCCTCGTCCAACAACAGGCCAG
AGCAACAACCTCTTCGCAGCTGTAAGACCACGCCCGCCAGCTGCTTGTTC
TTTATGCTGTCTCGTGTTTTGGCCCTGGCCCGTTGTCCTGCTGCCGCTAC
CGGCTTTTTGACGACCCGTCTCGCCCTCTGTCCTCACCCTATCATCCGCG
CTGCTTCCTCTGCTACCACAGCTATGAGGTACGAGACACTGGCGATCGAT
AAAGGAAAGGCCGATGCCCCAGGCGTTGTTTTTATCAAAATGAATCGCCC
TCAAAAGCGCAATGCGATGAACAGCAAGTTCTGGGGCGAATGCAAAGCCG
CTTTCGAGGCGCTAGGGGAGGATGGAGACGTGCGTGCTATTGTGCTTATG
GGGGAAGGGAAGGTTTTTACCTCTGGCTTGGATTTGTCAGATATCGGTAT
CGATTTGATGGGAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|578724 >mRNA_2008-protein ID=mRNA_2008-protein|Name=jgi.p|Nanoce1779_2|578724|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MNMAQQKLRHSVMKLEAISGFLLGAILVPGASSSTDPLTLVPLTRFHSRT
RNKGASHYFLFHQRMPQHRRLSFMMAVVATTATTTLLLLGRASATTASVL
RPRRPSLLPAFLPPFPLTTTAIRGVRSRPGPALGGSLANSIRLAWVKVLG
SALAEEVDPGEVEGTDLRVLKYPDPRLRASNAEITDFGPEVAALAKDMFK
VMYAMNGVGLAAPQVGVNQRLMVFNPMGDKVKWLNEVVLCNPVIVERSGK
TEVAEEGCLSFPGMAGDVERSLVIKVTFQNAKGKTVTKKFRDWEARIFQH
EYDHLDGVVYIDRLLPESKEKVQPVLDKLVADFGPGGAL* back to topmRNA from alignment at scaffold_4:551155..553362- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2008 ID=mRNA_2008|Name=jgi.p|Nanoce1779_2|578724|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at scaffold_4:551155..553362- (Nannochloropsis oceanica)
CCCCTGCACACTTAATGAACATGGCACAACAAAAACTACGTCATAGCGTG
ATGAAGCTTGAAGCAATCAGTGGTTTTCTCCTAGGTGCTATATTGGTCCC
AGGCGCATCATCTTCAACAGATCCCCTAACCCTTGTTCCTCTCACCCGCT
TTCACAGCCGCACACGAAACAAAGGCGCATCACATTATTTCCTTTTCCAC
CAACGAATGCCACAGCATCGTCGGTTGTCCTTCATGATGGCTGTCGTCGC
AACCACCGCCACAACCACCCTCCTCCTCCTTGGCCGCGCCTCCGCCACCA
CAGCATCCGTCCTGCGTCCCCGGCGCCCGAGTCTGCTACCTGCATTCCTC
CCTCCCTTCCCCCTCACAACCACAGCCATCCGTGGTGTTCGTTCTCGCCC
TGGTCCTGCGCTTGGCGGCAGCCTAGCCAATTCCATTCGGCTAGCATGGG
TCAAGGTTCTTGGCTCGGCGCTAGCGGAGGAAGTCGACCCCGGCGAGGTG
GAAGGAACGGATCTACGTGTGCTCAAGTACCCCGACCCCCGTCTTCGAGC
CTCCAACGCAGAAATCACAGACTTTGGCCCGGAAGTGGCGGCCTTGGCAA
AGGATATGTTTAAAGTGATGTACGCGATGAACGGGGTAGGATTGGCAGCA
CCGCAAGTAGGTGTGAATCAACGTCTGATGGTTTTTAACCCCATGGGGGA
TAAAGTGAAGTGGCTGAACGAGGTGGTGTTGTGCAACCCTGTGATTGTTG
AGAGGTCGGGCAAGACGGAAGTTGCAGAGGAGGGGTGTTTGTCGTTTCCG
GGTATGGCTGGCGATGTACGTATGCAGAGAGGGATGAAGGGAGGGAGGGA
GGGAGGGAGGAGAGGATAGAGCGAGCAAAGGGACGGCATGAAGAGGGTAA
TCAGATTTTGTGCGCGTGCTTATTTTTATGTCTGTCTTTTTTTGGGCATA
TTGCAGGTTGAGCGCTCGCTCGTTATTAAGGTGACATTCCAAAACGCCAA
GGGAAAGACTGTCACCAAGAAATTTCGTGATTGGGAGGCGCGCATTTTCC
AGCATGAGTACGACCATTTGGACGGCGTAGTGTATATTGATAGGCTCTTG
CCAGAGTCGAAGGAGAAGGTATGTTTGCGAAATGACGGACGAGAGGGAGA
TTAATGTGGTGCGATAGGTGTGTGTTCGTTTCAAGTACGAGTGAGAAGGA
GCGCCGCCTGACTGAGGCCAGAGTAAAATCTTAAGCTGGGGAATGGGAAC
TAAGGGAGCGATAGTGCGGAAAGAGTGATCTGATGAGCTGACGAGTTAAC
ATTATATCCCCAAAAACAGGTGCAGCCGGTGTTAGACAAGTTGGTTGCTG
ACTTTGGCCCGGGCGGAGCTTTGTGAGGAGGTTTGGGATGTCTCACAGAA
GATGTGTTGCAGTGCGCAGGCATTTTTTTTAACAGACCGAGTCAATCCCG
ACATGTAATAAACTTCTCAGTGAAAGAAGAGAACGCAAACGAATGACTAA
CACCGTGGAGTTACCTGTTGCTATCTTTCCCCTTGCCCGGTGCAGTAATG
GGCCAAGCTCAAGCGAGGCGTGATCATGCCCCACTCTTTTACTTTGCTTT
GCCTGCCCGAAACAAGCATGACTTACCCCACTCTGACTAACCAGTGCATG
CTGTACTCTCGGAAAAAGTTGTAGCATCGACGACGTGCGGCCTGCCTCGC
TGTTGTTGCAATAGATAGTCTCTTCATCGATATCGTTCATGAACCCCAGT
CCACGCCTCATCGACAACGCCCCTCGTCCAACAACAGGCCAGAGCAACAA
CCTCTTCGCAGCTGTAAGACCACGCCCGCCAGCTGCTTGTTCTTTATGCT
GTCTCGTGTTTTGGCCCTGGCCCGTTGTCCTGCTGCCGCTACCGGCTTTT
TGACGACCCGTCTCGCCCTCTGTCCTCACCCTATCATCCGCGCTGCTTCC
TCTGCTACCACAGCTATGAGGTACGAGACACTGGCGATCGATAAAGGAAA
GGCCGATGCCCCAGGCGTTGTTTTTATCAAAATGAATCGCCCTCAAAAGC
GCAATGCGATGAACAGCAAGTTCTGGGGCGAATGCAAAGCCGCTTTCGAG
GCGCTAGGGGAGGATGGAGACGTGCGTGCTATTGTGCTTATGGGGGAAGG
GAAGGTTTTTACCTCTGGCTTGGATTTGTCAGATATCGGTATCGATTTGA
TGGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_4:551155..553362- >mRNA_2008 ID=mRNA_2008|Name=jgi.p|Nanoce1779_2|578724|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_4:551155..553362- (Nannochloropsis oceanica)
GTGCAGCCGGTGTTAGACAAGTTGGTTGCTGACTTTGGCCCGGGCGGAGC
TTTGTGAGTTGAGCGCTCGCTCGTTATTAAGGTGACATTCCAAAACGCCA
AGGGAAAGACTGTCACCAAGAAATTTCGTGATTGGGAGGCGCGCATTTTC
CAGCATGAGTACGACCATTTGGACGGCGTAGTGTATATTGATAGGCTCTT
GCCAGAGTCGAAGGAGAAGATGAACATGGCACAACAAAAACTACGTCATA
GCGTGATGAAGCTTGAAGCAATCAGTGGTTTTCTCCTAGGTGCTATATTG
GTCCCAGGCGCATCATCTTCAACAGATCCCCTAACCCTTGTTCCTCTCAC
CCGCTTTCACAGCCGCACACGAAACAAAGGCGCATCACATTATTTCCTTT
TCCACCAACGAATGCCACAGCATCGTCGGTTGTCCTTCATGATGGCTGTC
GTCGCAACCACCGCCACAACCACCCTCCTCCTCCTTGGCCGCGCCTCCGC
CACCACAGCATCCGTCCTGCGTCCCCGGCGCCCGAGTCTGCTACCTGCAT
TCCTCCCTCCCTTCCCCCTCACAACCACAGCCATCCGTGGTGTTCGTTCT
CGCCCTGGTCCTGCGCTTGGCGGCAGCCTAGCCAATTCCATTCGGCTAGC
ATGGGTCAAGGTTCTTGGCTCGGCGCTAGCGGAGGAAGTCGACCCCGGCG
AGGTGGAAGGAACGGATCTACGTGTGCTCAAGTACCCCGACCCCCGTCTT
CGAGCCTCCAACGCAGAAATCACAGACTTTGGCCCGGAAGTGGCGGCCTT
GGCAAAGGATATGTTTAAAGTGATGTACGCGATGAACGGGGTAGGATTGG
CAGCACCGCAAGTAGGTGTGAATCAACGTCTGATGGTTTTTAACCCCATG
GGGGATAAAGTGAAGTGGCTGAACGAGGTGGTGTTGTGCAACCCTGTGAT
TGTTGAGAGGTCGGGCAAGACGGAAGTTGCAGAGGAGGGGTGTTTGTCGT
TTCCGGGTATGGCTGGCGATGTGCAGCCGGTGTTAGACAAGTTGGTTGCT
GACTTTGGCCCGGGCGGAGCTTTGTGAGTTGAGCGCTCGCTCGTTATTAA
GGTGACATTCCAAAACGCCAAGGGAAAGACTGTCACCAAGAAATTTCGTG
ATTGGGAGGCGCGCATTTTCCAGCATGAGTACGACCATTTGGACGGCGTA
GTGTATATTGATAGGCTCTTGCCAGAGTCGAAGGAGAAGATGAACATGGC
ACAACAAAAACTACGTCATAGCGTGATGAAGCTTGAAGCAATCAGTGGTT
TTCTCCTAGGTGCTATATTGGTCCCAGGCGCATCATCTTCAACAGATCCC
CTAACCCTTGTTCCTCTCACCCGCTTTCACAGCCGCACACGAAACAAAGG
CGCATCACATTATTTCCTTTTCCACCAACGAATGCCACAGCATCGTCGGT
TGTCCTTCATGATGGCTGTCGTCGCAACCACCGCCACAACCACCCTCCTC
CTCCTTGGCCGCGCCTCCGCCACCACAGCATCCGTCCTGCGTCCCCGGCG
CCCGAGTCTGCTACCTGCATTCCTCCCTCCCTTCCCCCTCACAACCACAG
CCATCCGTGGTGTTCGTTCTCGCCCTGGTCCTGCGCTTGGCGGCAGCCTA
GCCAATTCCATTCGGCTAGCATGGGTCAAGGTTCTTGGCTCGGCGCTAGC
GGAGGAAGTCGACCCCGGCGAGGTGGAAGGAACGGATCTACGTGTGCTCA
AGTACCCCGACCCCCGTCTTCGAGCCTCCAACGCAGAAATCACAGACTTT
GGCCCGGAAGTGGCGGCCTTGGCAAAGGATATGTTTAAAGTGATGTACGC
GATGAACGGGGTAGGATTGGCAGCACCGCAAGTAGGTGTGAATCAACGTC
TGATGGTTTTTAACCCCATGGGGGATAAAGTGAAGTGGCTGAACGAGGTG
GTGTTGTGCAACCCTGTGATTGTTGAGAGGTCGGGCAAGACGGAAGTTGC
AGAGGAGGGGTGTTTGTCGTTTCCGGGTATGGCTGGCGATGTGCAGCCGG
TGTTAGACAAGTTGGTTGCTGACTTTGGCCCGGGCGGAGCTTTGTGAGTT
GAGCGCTCGCTCGTTATTAAGGTGACATTCCAAAACGCCAAGGGAAAGAC
TGTCACCAAGAAATTTCGTGATTGGGAGGCGCGCATTTTCCAGCATGAGT
ACGACCATTTGGACGGCGTAGTGTATATTGATAGGCTCTTGCCAGAGTCG
AAGGAGAAGATGAACATGGCACAACAAAAACTACGTCATAGCGTGATGAA
GCTTGAAGCAATCAGTGGTTTTCTCCTAGGTGCTATATTGGTCCCAGGCG
CATCATCTTCAACAGATCCCCTAACCCTTGTTCCTCTCACCCGCTTTCAC
AGCCGCACACGAAACAAAGGCGCATCACATTATTTCCTTTTCCACCAACG
AATGCCACAGCATCGTCGGTTGTCCTTCATGATGGCTGTCGTCGCAACCA
CCGCCACAACCACCCTCCTCCTCCTTGGCCGCGCCTCCGCCACCACAGCA
TCCGTCCTGCGTCCCCGGCGCCCGAGTCTGCTACCTGCATTCCTCCCTCC
CTTCCCCCTCACAACCACAGCCATCCGTGGTGTTCGTTCTCGCCCTGGTC
CTGCGCTTGGCGGCAGCCTAGCCAATTCCATTCGGCTAGCATGGGTCAAG
GTTCTTGGCTCGGCGCTAGCGGAGGAAGTCGACCCCGGCGAGGTGGAAGG
AACGGATCTACGTGTGCTCAAGTACCCCGACCCCCGTCTTCGAGCCTCCA
ACGCAGAAATCACAGACTTTGGCCCGGAAGTGGCGGCCTTGGCAAAGGAT
ATGTTTAAAGTGATGTACGCGATGAACGGGGTAGGATTGGCAGCACCGCA
AGTAGGTGTGAATCAACGTCTGATGGTTTTTAACCCCATGGGGGATAAAG
TGAAGTGGCTGAACGAGGTGGTGTTGTGCAACCCTGTGATTGTTGAGAGG
TCGGGCAAGACGGAAGTTGCAGAGGAGGGGTGTTTGTCGTTTCCGGGTAT
GGCTGGCGAT back to top
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