jgi.p|Nanoce1779_2|624881, mRNA_2006 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624881
Unique Name	mRNA_2006
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2395
Alignment location	scaffold_4:548537..551154 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	624967
Track	FilteredModels2
ProteinId	624881

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:548537..551154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624881	gene_2006	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624881	mRNA_2006-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2006	CDS_2006	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:548537..551154+
coding sequence from alignment at scaffold_4:548537..551154+

mRNA sequence

>mRNA_2006 ID=mRNA_2006|Name=jgi.p|Nanoce1779_2|624881|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp
AGGCCGCAAGACAACACTCAAATCAAGAAGCACGAGGAACAGGACATAAC
GGCAACGACTCGACGATGGCATTAGTTCTTCGCCGCTCGGCCACCATTTA
CGCGCATGCCCATGTGGCGACAGCGAGGACTGTCCGGACCACTTCGCAGC
ACTCCTTAGCTTCATCCAGCACCGACTTTAGCAAGCCAATCGAGCTCCGT
TCCGACACTTTTACTCGCCCCTGCGACGGCATGCGCAAAGCCATGTATGC
CGCTGAGGTAGGTGATGCCTGCTACAATGAAGATAAGACAGTACAGCGTT
TGGAAGAAGCGGTGGCGGGGCTGTTAGGGAAGGAAGCAGGGATGTTTGCG
GCTTCGGGAACCATGACCAATTTATTGGCTTTGGCAGCACATTGTAAGAG
GGGGGACGAGATTATCTTGGGGCACCAGAACCACATTTATAATTATGAGG
GAGGGGGGGCATCAGCGCTGTTAGGGGTGGCATTTCATCCGGTCGCGACG
CTGGAGAACGGGGCTAATCGGATGGAGGATTTGCGGGAAGCTATCAGAGA
TGACGATTTCCATTTTGCCCGTACCTCCCTCGTGGCTGTCGAAACGACGC
ACAATAAGGCAAACGGAGCGCCGTTGCCTTTATCGTTTATGGATGACGTG
GCAGGATTGTGTCGGGAGCATAGCTTGATTTTTCATGTGGATGGGGCGAG
GCTCATGAATGCCTCGGTGGCCTTGCAAACTCCCGCTTCGGAGATTGTCC
GGCACACTGACTCGGTTTCCCTGTGTCTGAGCAAGGGGTTAGGTGCGCCG
GTTGGCTCCGTGCTGGTTGGTACGCATTCAGTCATCAAGGAGGCAAAGCG
GCAACGGAAGGTCTTAGGGGGGGGATGGAGGCAGGCGGGTGTACTGGCTG
CAGCGGGTCTGTATGCGCTTGAACATAATGTAGGGAAGCTGGAAAGAGAT
CATTGCAATGCGCGGAGACTGGCCGAGGGCTTCAGTCAGATTCCTGGAAT
TGTGTGTGATCCGTCTGCGGTGGCGAGTAATATCGTGTACTTCCGTGTGT
TGGGATTGCCGGCGGGGGAGGTGGTGAGGAGGTTGAAGGAGGAGTTTAAC
GTCTTGTTGGGGATTGGGGCGTATCGCGGGGATAGGTTAAGAGCTGTGAC
TAATTTGATGGTCACGGAGCAAGACATTGCGCGGGTGGTGTTTGCCATGT
CTGAGATAGTGGGGCAGACGAATAGAGCAAAAGTGGACCGGGCGTGTGGG
ATTTTTAGAGAGACGGCGGTGGCTGTGTAAATCTCGCGGGAGAGGGAGAG
CGACTGGGGGGTAGCGGCGGTGACCGAGGTTATAGGAGAGATTGAGTTGA
GAAGAAAGAATGACACAGTGTAGATATTACAGTGAGAGAAAGTGCGAGGG
GGGGTGGAGAGGTCTAGAGCAGGCCGAAGGGAAAGAGAATGAGTGAGAGA
AAAGAGGAGAAGAATCTACCGACGAATATGTAGCTATAGCTGGCGAGCAA
GGCCTATCGAAGCCAAAGTGTCCAAGATAAAGTAGAGAATGAAGAAGTAT
GTGTATTTGGCTTGCGATATGCGTTTGTAGTTGCACACATGTATCTGTAA
TAGCACGTAAGACTACCGGCAGCATCATCACCACCACTACCACCATCCCG
ACGCGAGGGCAGCAAAATACTTGTCTGTGGATCAAAGCCTCGCTGAGAAA
AAAAAAGTAAAAATACATGACATGCACACGCACCCTAGTACTGTCTTGAG
TTTCATTTTTCTTGCTCTCCTTCAATATCCCCCTCTCTTCCTCCCTCCTA
CAGCTTCGAATAAGTCGGCACCTCCTTTGTGATCGCCCCCTGGACAGCCC
TTCCAATATCCTCACTCTGTAAAGCACTCATATTCCACGTCGTCATATGA
TTCAACCCGTCCTGCACCGACGCGTGGTCCCGCGAATAAAGCAGATTCAC
TTTCGTCCCCGTCACTGCCACGGGACTCTTATTCGCTATCTCGACCGCCA
AAGCCGTAGCAGCTGCAATTGTCTCGGTAGGGGAAGGTAAGACACGGCTG
AACAATCCGAGAAGCTGGCCTTCGGTACAATTGAAGTTTCGGCCAGTGAA
AGCAAGCTCGCGGAGTAGACTCTCATTCCCCGTTATGCGTGGGAGTCGCT
GCAACGTGCCAAGGTCAGCAGCCAAACCAATGTCCACCTCCTTGATACTG
AAAACTGTCTCGGCCGACGCCAAACGAATGTCACACGCCGCGATCAAGTC
GACCCCCCCCCCCGATGCATGCCCCATGGATGGCAGCAATGACTGGCTGG
GGAATTTTCTCAATAGCGTTGAAAGCGTCTTGCATCCGCGTCACATGCTT
CTTAATCTTCAAAGCCTGCCGCGCCACGTCCACCCCATCCCCACC

protein sequence of jgi.p|Nanoce1779_2|624881

>mRNA_2006-protein ID=mRNA_2006-protein|Name=jgi.p|Nanoce1779_2|624881|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MALVLRRSATIYAHAHVATARTVRTTSQHSLASSSTDFSKPIELRSDTFT
RPCDGMRKAMYAAEVGDACYNEDKTVQRLEEAVAGLLGKEAGMFAASGTM
TNLLALAAHCKRGDEIILGHQNHIYNYEGGGASALLGVAFHPVATLENGA
NRMEDLREAIRDDDFHFARTSLVAVETTHNKANGAPLPLSFMDDVAGLCR
EHSLIFHVDGARLMNASVALQTPASEIVRHTDSVSLCLSKGLGAPVGSVL
VGTHSVIKEAKRQRKVLGGGWRQAGVLAAAGLYALEHNVGKLERDHCNAR
RLAEGFSQIPGIVCDPSAVASNIVYFRVLGLPAGEVVRRLKEEFNVLLGI
GAYRGDRLRAVTNLMVTEQDIARVVFAMSEIVGQTNRAKVDRACGIFRET
AVAV*

mRNA from alignment at scaffold_4:548537..551154+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2006 ID=mRNA_2006|Name=jgi.p|Nanoce1779_2|624881|organism=Nannochloropsis oceanica|type=mRNA|length=2618bp|location=Sequence derived from alignment at scaffold_4:548537..551154+ (Nannochloropsis oceanica)
AGGCCGCAAGACAACACTCAAATCAAGAAGCACGAGGAACAGGACATAAC
GGCAACGACTCGACGATGGCATTAGTTCTTCGCCGCTCGGCCACCATTTA
CGCGCATGCCCATGTGGCGACAGCGAGGACTGTCCGGACCACTTCGCAGC
ACTCCTTAGCTTCATCCAGCACCGACTTTAGCAAGCCAAGTAAGTGGAGC
GTGGATGCGGGTGGCAGGAGAGAGAGCAGTGGCTCGATTTGGGAGGGGCA
TCCTTTCGTATGATACCCCCAGCGAAGCCCCAGTCTCTTGTTTTCCTTTC
TTGATTTCCTGTGCATTTATAAAGGGTTCAGCGAAGAGAACTCCTCCCTT
GGATGTCCGCCCACTCCCCAACTTAACACTTCCTCCCTCCCCCTCCCGCC
TGCCACCCCTAGTCGAGCTCCGTTCCGACACTTTTACTCGCCCCTGCGAC
GGCATGCGCAAAGCCATGTATGCCGCTGAGGTAGGTGATGCCTGCTACAA
TGAAGATAAGACAGTACAGCGTTTGGAAGAAGCGGTGGCGGGGCTGTTAG
GGAAGGAAGCAGGGATGTTTGCGGCTTCGGGAACCATGACCAATTTATTG
GCTTTGGCAGCACATTGTAAGAGGGGGGACGAGATTATCTTGGGGCACCA
GAACCACATTTATAATTATGAGGGAGGGGGGGCATCAGCGCTGTTAGGGG
TGGCATTTCATCCGGTCGCGACGCTGGAGAACGGGGCTAATCGGATGGAG
GATTTGCGGGAAGCTATCAGAGATGACGATTTCCATTTTGCCCGTACCTC
CCTCGTGGCTGTCGAAACGACGCACAATAAGGCAAACGGAGCGCCGTTGC
CTTTATCGTTTATGGATGACGTGGCAGGATTGTGTCGGGAGCATAGCTTG
ATTTTTCATGTGGATGGGGCGAGGCTCATGAATGCCTCGGTGGCCTTGCA
AACTCCCGCTTCGGAGATTGTCCGGCACACTGACTCGGTTTCCCTGTGTC
TGAGCAAGGGGTTAGGTGCGCCGGTTGGCTCCGTGCTGGTTGGTACGCAT
TCAGTCATCAAGGAGGCAAAGCGGCAACGGAAGGTCTTAGGGGGGGGATG
GAGGCAGGCGGGTGTACTGGCTGCAGCGGGTCTGTATGCGCTTGAACATA
ATGTAGGGAAGCTGGAAAGAGATCATTGCAATGCGCGGAGACTGGCCGAG
GGCTTCAGTCAGATTCCTGGAATTGTGTGTGATCCGTCTGCGGTGGCGAG
TAATATCGTGTACTTCCGTGTGTTGGGATTGCCGGCGGGGGAGGTGGTGA
GGAGGTTGAAGGAGGAGTTTAACGTCTTGTTGGGGATTGGGGCGTATCGC
GGGGATAGGTTAAGAGCTGTGACTAATTTGATGGTCACGGAGCAAGACAT
TGCGCGGGTGGTGTTTGCCATGTCTGAGATAGTGGGGCAGACGAATAGAG
CAAAAGTGGACCGGGCGTGTGGGATTTTTAGAGAGACGGCGGTGGCTGTG
TAAATCTCGCGGGAGAGGGAGAGCGACTGGGGGGTAGCGGCGGTGACCGA
GGTTATAGGAGAGATTGAGTTGAGAAGAAAGAATGACACAGTGTAGATAT
TACAGTGAGAGAAAGTGCGAGGGGGGGTGGAGAGGTCTAGAGCAGGCCGA
AGGGAAAGAGAATGAGTGAGAGAAAAGAGGAGAAGAATCTACCGACGAAT
ATGTAGCTATAGCTGGCGAGCAAGGCCTATCGAAGCCAAAGTGTCCAAGA
TAAAGTAGAGAATGAAGAAGTATGTGTATTTGGCTTGCGATATGCGTTTG
TAGTTGCACACATGTATCTGTAATAGCACGTAAGACTACCGGCAGCATCA
TCACCACCACTACCACCATCCCGACGCGAGGGCAGCAAAATACTTGTCTG
TGGATCAAAGCCTCGCTGAGAAAAAAAAAGTAAAAATACATGACATGCAC
ACGCACCCTAGTACTGTCTTGAGTTTCATTTTTCTTGCTCTCCTTCAATA
TCCCCCTCTCTTCCTCCCTCCTACAGCTTCGAATAAGTCGGCACCTCCTT
TGTGATCGCCCCCTGGACAGCCCTTCCAATATCCTCACTCTGTAAAGCAC
TCATATTCCACGTCGTCATATGATTCAACCCGTCCTGCACCGACGCGTGG
TCCCGCGAATAAAGCAGATTCACTTTCGTCCCCGTCACTGCCACGGGACT
CTTATTCGCTATCTCGACCGCCAAAGCCGTAGCAGCTGCAATTGTCTCGG
TAGGGGAAGGTAAGACACGGCTGAACAATCCGAGAAGCTGGCCTTCGGTA
CAATTGAAGTTTCGGCCAGTGAAAGCAAGCTCGCGGAGTAGACTCTCATT
CCCCGTTATGCGTGGGAGTCGCTGCAACGTGCCAAGGTCAGCAGCCAAAC
CAATGTCCACCTCCTTGATACTGAAAACTGTCTCGGCCGACGCCAAACGA
ATGTCACACGCCGCGATCAAGTCGACCCCCCCCCCCGATGCATGCCCCAT
GGATGGCAGCAATGACTGGCTGGGGAATTTTCTCAATAGCGTTGAAAGCG
TCTTGCATCCGCGTCACATGCTTCTTAATCTTCAAAGCCTGCCGCGCCAC
GTCCACCCCATCCCCACC

Coding sequence (CDS) from alignment at scaffold_4:548537..551154+

>mRNA_2006 ID=mRNA_2006|Name=jgi.p|Nanoce1779_2|624881|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_4:548537..551154+ (Nannochloropsis oceanica)
ATGGCATTAGTTCTTCGCCGCTCGGCCACCATTTACGCGCATGCCCATGT
GGCGACAGCGAGGACTGTCCGGACCACTTCGCAGCACTCCTTAGCTTCAT
CCAGCACCGACTTTAGCAAGCCAATCGAGCTCCGTTCCGACACTTTTACT
CGCCCCTGCGACGGCATGCGCAAAGCCATGTATGCCGCTGAGGTAGGTGA
TGCCTGCTACAATGAAGATAAGACAGTACAGCGTTTGGAAGAAGCGGTGG
CGGGGCTGTTAGGGAAGGAAGCAGGGATGTTTGCGGCTTCGGGAACCATG
ACCAATTTATTGGCTTTGGCAGCACATTGTAAGAGGGGGGACGAGATTAT
CTTGGGGCACCAGAACCACATTTATAATTATGAGGGAGGGGGGGCATCAG
CGCTGTTAGGGGTGGCATTTCATCCGGTCGCGACGCTGGAGAACGGGGCT
AATCGGATGGAGGATTTGCGGGAAGCTATCAGAGATGACGATTTCCATTT
TGCCCGTACCTCCCTCGTGGCTGTCGAAACGACGCACAATAAGGCAAACG
GAGCGCCGTTGCCTTTATCGTTTATGGATGACGTGGCAGGATTGTGTCGG
GAGCATAGCTTGATTTTTCATGTGGATGGGGCGAGGCTCATGAATGCCTC
GGTGGCCTTGCAAACTCCCGCTTCGGAGATTGTCCGGCACACTGACTCGG
TTTCCCTGTGTCTGAGCAAGGGGTTAGGTGCGCCGGTTGGCTCCGTGCTG
GTTGGTACGCATTCAGTCATCAAGGAGGCAAAGCGGCAACGGAAGGTCTT
AGGGGGGGGATGGAGGCAGGCGGGTGTACTGGCTGCAGCGGGTCTGTATG
CGCTTGAACATAATGTAGGGAAGCTGGAAAGAGATCATTGCAATGCGCGG
AGACTGGCCGAGGGCTTCAGTCAGATTCCTGGAATTGTGTGTGATCCGTC
TGCGGTGGCGAGTAATATCGTGTACTTCCGTGTGTTGGGATTGCCGGCGG
GGGAGGTGGTGAGGAGGTTGAAGGAGGAGTTTAACGTCTTGTTGGGGATT
GGGGCGTATCGCGGGGATAGGTTAAGAGCTGTGACTAATTTGATGGTCAC
GGAGCAAGACATTGCGCGGGTGGTGTTTGCCATGTCTGAGATAGTGGGGC
AGACGAATAGAGCAAAAGTGGACCGGGCGTGTGGGATTTTTAGAGAGACG
GCGGTGGCTGTGTAAATGGCATTAGTTCTTCGCCGCTCGGCCACCATTTA
CGCGCATGCCCATGTGGCGACAGCGAGGACTGTCCGGACCACTTCGCAGC
ACTCCTTAGCTTCATCCAGCACCGACTTTAGCAAGCCAATCGAGCTCCGT
TCCGACACTTTTACTCGCCCCTGCGACGGCATGCGCAAAGCCATGTATGC
CGCTGAGGTAGGTGATGCCTGCTACAATGAAGATAAGACAGTACAGCGTT
TGGAAGAAGCGGTGGCGGGGCTGTTAGGGAAGGAAGCAGGGATGTTTGCG
GCTTCGGGAACCATGACCAATTTATTGGCTTTGGCAGCACATTGTAAGAG
GGGGGACGAGATTATCTTGGGGCACCAGAACCACATTTATAATTATGAGG
GAGGGGGGGCATCAGCGCTGTTAGGGGTGGCATTTCATCCGGTCGCGACG
CTGGAGAACGGGGCTAATCGGATGGAGGATTTGCGGGAAGCTATCAGAGA
TGACGATTTCCATTTTGCCCGTACCTCCCTCGTGGCTGTCGAAACGACGC
ACAATAAGGCAAACGGAGCGCCGTTGCCTTTATCGTTTATGGATGACGTG
GCAGGATTGTGTCGGGAGCATAGCTTGATTTTTCATGTGGATGGGGCGAG
GCTCATGAATGCCTCGGTGGCCTTGCAAACTCCCGCTTCGGAGATTGTCC
GGCACACTGACTCGGTTTCCCTGTGTCTGAGCAAGGGGTTAGGTGCGCCG
GTTGGCTCCGTGCTGGTTGGTACGCATTCAGTCATCAAGGAGGCAAAGCG
GCAACGGAAGGTCTTAGGGGGGGGATGGAGGCAGGCGGGTGTACTGGCTG
CAGCGGGTCTGTATGCGCTTGAACATAATGTAGGGAAGCTGGAAAGAGAT
CATTGCAATGCGCGGAGACTGGCCGAGGGCTTCAGTCAGATTCCTGGAAT
TGTGTGTGATCCGTCTGCGGTGGCGAGTAATATCGTGTACTTCCGTGTGT
TGGGATTGCCGGCGGGGGAGGTGGTGAGGAGGTTGAAGGAGGAGTTTAAC
GTCTTGTTGGGGATTGGGGCGTATCGCGGGGATAGGTTAAGAGCTGTGAC
TAATTTGATGGTCACGGAGCAAGACATTGCGCGGGTGGTGTTTGCCATGT
CTGAGATAGTGGGGCAGACGAATAGAGCAAAAGTGGACCGGGCGTGTGGG
ATTTTTAGAGAGACGGCGGTGGCTGTGTAA

Synonyms

Publications