jgi.p|Nanoce1779_2|668743, mRNA_2004 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668743
Unique NamemRNA_2004
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length690
Alignment locationscaffold_4:546492..547238 +

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Properties
Property NameValue
TranscriptId668829
TrackFilteredModels2
ProteinId668743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:546492..547238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668743gene_2004Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668743mRNA_2004-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2004CDS_2004Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2004 ID=mRNA_2004|Name=jgi.p|Nanoce1779_2|668743|organism=Nannochloropsis oceanica|type=mRNA|length=690bp
CGACGCAGCCAGCGTCAAGAGAGGACGCGGTTAGGATAAGGCGGGAACGA
GGCATCAGTGTTCCATGCGTCTCGCGCTGCGAGCGCTACTATGTGCGTTG
ACTGGACCTTTGCCTTGCGTTGCCGATGTGGCATTTACTGAGCTGGAGGC
TTACCACGCATGCCCACCGTACATGCTGGCACAATCACAACCTCCTTCGC
AAGCTGGTTGTCGTCGTCTTGTTGATTCATATCCCCCTCAGCTCGGCCAT
CATCACCTCACTAGAGAGCGAAGCAAAGTCCGTCAAACGCGCACCAGGAT
AAACAGAACCGCAATTCTGGTGCATGCAATTATTTTTTCTATTACCAGGC
TTCGGTGAGGGTGTGTTGGTGGCAATCACCCCTAAGCCCTTATCTCTTAA
CTCCTGTATTCCACTCTATCTCATGACGCACCATTCCCACCGCCTCAACC
ATGAACAACAGCCAACCAACCACGAGTAAGCACATCTCCCAATCAATGGG
TTCCATATCCTCCCTCATCTTTGATCCGGCCCCGTCCATCAACTACGATT
TCGTCGCGGGCTCTTACCTTGTGGCTTCCATAATCTGCCTGGCGCTGGCC
GTAGCTTCTATTTTCTTTGAGGTGTCTTTGATCGTGCGGTCACGGTGGCA
AGCGGGGTTGAAGGCAGCAGCAAAGAGCAAGGAGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|668743

>mRNA_2004-protein ID=mRNA_2004-protein|Name=jgi.p|Nanoce1779_2|668743|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MRLALRALLCALTGPLPCVADVAFTELEAYHACPPYMLAQSQPPSQAGCR
RLVDSYPPQLGHHHLTRERSKVRQTRTRINRTAILVHAIIFSITRLR*
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mRNA from alignment at scaffold_4:546492..547238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2004 ID=mRNA_2004|Name=jgi.p|Nanoce1779_2|668743|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at scaffold_4:546492..547238+ (Nannochloropsis oceanica)
CGACGCAGCCAGCGTCAAGAGAGGACGCGGTTAGGATAAGGCGGGAACGA
GGCATCAGTGTTCCATGCGTCTCGCGCTGCGAGCGCTACTATGTGCGTTG
ACTGGACCTTTGCCTTGCGTTGCCGATGTGGCATTTACTGAGCTGGAGGC
TTACCACGCATGCCCACCGTACATGCTGGCACAATCACAACCTCCTTCGC
AAGCTGGTTGTCGTCGTCTTGTTGATTCATATCCCCCTCAGCTCGGCCAT
CATCACCTCACTAGAGAGCGAAGCAAAGTCCGTCAAACGCGCACCAGGAT
AAACAGAACCGCAATTCTGGTGCATGCAATTATTTTTTCTATTACCAGGC
TTCGGTGAGGGTGTGTTGGTGGCAATCACCCCTAAGCCCTTATCTCTTAA
CTCCTGTATTCCACTCTATCTCATGACGCACCATTCCCACCGCCTCAACC
ATGAACAACAGCCAACCAACCACGAGTAAGCACATCTCCCAATCAATGGG
TTCCATATCCTCCCTCATCTTTGATCCGGCCCCGTCCATCAACTACGATT
TCGTCGCGGGCTCTTACCTTGTGGCTTCCATAATCTGCCTGGCGCTGGCC
GTAGCTTCTATTTTCTTTGAGGTGTCGTCAGTGAAAGGATGGTGGATTGC
CCTGGCCCCGTTTCCTCCGTCATTTTTATGGAGTTTGATCGTGCGGTCAC
GGTGGCAAGCGGGGTTGAAGGCAGCAGCAAAGAGCAAGGAGGAGTAG
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Coding sequence (CDS) from alignment at scaffold_4:546492..547238+

>mRNA_2004 ID=mRNA_2004|Name=jgi.p|Nanoce1779_2|668743|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_4:546492..547238+ (Nannochloropsis oceanica)
ATGCGTCTCGCGCTGCGAGCGCTACTATGTGCGTTGACTGGACCTTTGCC
TTGCGTTGCCGATGTGGCATTTACTGAGCTGGAGGCTTACCACGCATGCC
CACCGTACATGCTGGCACAATCACAACCTCCTTCGCAAGCTGGTTGTCGT
CGTCTTGTTGATTCATATCCCCCTCAGCTCGGCCATCATCACCTCACTAG
AGAGCGAAGCAAAGTCCGTCAAACGCGCACCAGGATAAACAGAACCGCAA
TTCTGGTGCATGCAATTATTTTTTCTATTACCAGGCTTCGGTGA
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Synonyms
Publications