jgi.p|Nanoce1779_2|578718, mRNA_2002 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578718
Unique NamemRNA_2002
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length440
Alignment locationscaffold_4:544964..545737 -

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Properties
Property NameValue
TranscriptId578804
TrackFilteredModels2
ProteinId578718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:544964..545737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578718gene_2002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578718mRNA_2002-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2002CDS_2002Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2002 ID=mRNA_2002|Name=jgi.p|Nanoce1779_2|578718|organism=Nannochloropsis oceanica|type=mRNA|length=440bp
TCCACACGTATCCAGGCCCGGTCCTATGCTGGCCAGCCCCCCGGCGTGCC
TGGTAATCACATGCAGCCCCAGCCTCAAGGCGGGGGGTGGGCATCGTCAA
ACCAAATGTATCCTTCTGGTCCCTCTGGACCCCCTCCTCCCTCCGGCCCT
CTTCCTCCTCCTCCTCCTCCTCATTCCGTTGGCCCCTATTACTACCCAAC
GGCTCCCCTTCCCGGCAACAACCCCACTGCTCCTGCTGCTGCTACTGCTC
AGCAGTACGCACAGCAGCAGCAAGGAGTAGGACCGCAGTGGGCGAATGGT
GGTGGGGGAGGAAATGGCGCTCCAGGAGGAGCAGTAGGAGGAGGAGCAGG
CGGGGGGGGGCTAAGAGGGGGAAGGAATGGAGTTGGATCTGCCGCAAGTG
GAGGGGTAGGTGGGGACGGATTGAGGGGAGGAAGCGCACC
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protein sequence of jgi.p|Nanoce1779_2|578718

>mRNA_2002-protein ID=mRNA_2002-protein|Name=jgi.p|Nanoce1779_2|578718|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MLASPPACLVITCSPSLKAGGGHRQTKCILLVPLDPLLPPALFLLLLLLI
PLAPITTQRLPFPATTPLLLLLLLLSSTHSSSKE*
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mRNA from alignment at scaffold_4:544964..545737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2002 ID=mRNA_2002|Name=jgi.p|Nanoce1779_2|578718|organism=Nannochloropsis oceanica|type=mRNA|length=774bp|location=Sequence derived from alignment at scaffold_4:544964..545737- (Nannochloropsis oceanica)
TCCACACGTATCCAGGCCCGGTCCTATGCTGGCCAGCCCCCCGGCGTGCC
TGGTAATCACATGGTAAGTGCATATGGTTAGTGGTTCGCCTTGGGAAGAT
GGTGAAAGAGGGGAGGAAAAGGAGAGGAAGGGCGTTTTTTTTCTTTCACA
GTTTATGTGAGTTAGTAAATTTACATCTGTTGACACAAACGCAACCTTCA
AACTTAAACAAAAACAGCAGCCCCAGCCTCAAGGCGGGGGGTGGGCATCG
TCAAACCAAATGGTACGTGTATCATGTTTTAATTATTCATCGTTTAGTCG
GGTTCATGGCATAAGAAGATTGAAACAGATAAAGTTTGCCATTCCTTTCC
TTAAGTTGTTAGTCGTCCCAATCCCCTTGGTTCAAATAAGACACATTTTG
ATCTCATCTCCCCTCCCTCCCTCCCTTCTTCTTTCCACACAGTATCCTTC
TGGTCCCTCTGGACCCCCTCCTCCCTCCGGCCCTCTTCCTCCTCCTCCTC
CTCCTCATTCCGTTGGCCCCTATTACTACCCAACGGCTCCCCTTCCCGGC
AACAACCCCACTGCTCCTGCTGCTGCTACTGCTCAGCAGTACGCACAGCA
GCAGCAAGGAGTAGGACCGCAGTGGGCGAATGGTGGTGGGGGAGGAAATG
GCGCTCCAGGAGGAGCAGTAGGAGGAGGAGCAGGCGGGGGGGGGCTAAGA
GGGGGAAGGAATGGAGTTGGATCTGCCGCAAGTGGAGGGGTAGGTGGGGA
CGGATTGAGGGGAGGAAGCGCACC
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Coding sequence (CDS) from alignment at scaffold_4:544964..545737-

>mRNA_2002 ID=mRNA_2002|Name=jgi.p|Nanoce1779_2|578718|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_4:544964..545737- (Nannochloropsis oceanica)
TATCCTTCTGGTCCCTCTGGACCCCCTCCTCCCTCCGGCCCTCTTCCTCC
TCCTCCTCCTCCTCATTCCGTTGGCCCCTATTACTACCCAACGGCTCCCC
TTCCCGGCAACAACCCCACTGCTCCTGCTGCTGCTACTGCTCAGCAGTAC
GCACAGCAGCAGCAAGGAGTAGCAGCCCCAGCCTCAAGGCGGGGGGTGGG
CATCGTCAAACCAAATGATGCTGGCCAGCCCCCCGGCGTGCCTGGTAATC
ACATGTATCCTTCTGGTCCCTCTGGACCCCCTCCTCCCTCCGGCCCTCTT
CCTCCTCCTCCTCCTCCTCATTCCGTTGGCCCCTATTACTACCCAACGGC
TCCCCTTCCCGGCAACAACCCCACTGCTCCTGCTGCTGCTACTGCTCAGC
AGTACGCACAGCAGCAGCAAGGAGTAGCAGCCCCAGCCTCAAGGCGGGGG
GTGGGCATCGTCAAACCAAATGATGCTGGCCAGCCCCCCGGCGTGCCTGG
TAATCACATGTATCCTTCTGGTCCCTCTGGACCCCCTCCTCCCTCCGGCC
CTCTTCCTCCTCCTCCTCCTCCTCATTCCGTTGGCCCCTATTACTACCCA
ACGGCTCCCCTTCCCGGCAACAACCCCACTGCTCCTGCTGCTGCTACTGC
TCAGCAGTACGCACAGCAGCAGCAAGGAGTAGCAGCCCCAGCCTCAAGGC
GGGGGGTGGGCATCGTCAAACCAAATGATGCTGGCCAGCCCCCCGGCGTG
CCTGGTAATCACATG
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Synonyms
Publications