jgi.p|Nanoce1779_2|524688, mRNA_2001 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524688
Unique Name	mRNA_2001
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1638
Alignment location	scaffold_4:540272..542353 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	524774
Track	FilteredModels2
ProteinId	524688

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:540272..542353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524688	gene_2001	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524688	mRNA_2001-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2001	CDS_2001	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:540272..542353+
coding sequence from alignment at scaffold_4:540272..542353+

mRNA sequence

>mRNA_2001 ID=mRNA_2001|Name=jgi.p|Nanoce1779_2|524688|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp
ATGCCAAAGGATAGGAAAAAGCGGCGCGTGGCTTTGGTTCTCGGGTACGT
CGGAACCAACTACTCTGGCCTACAGAAGTCCGAAACTGGACCTGATGAAG
CAGACGTGATGACAATCGAGTCAGTGCTCGAAAAAGCCTTGTTTGACTCA
GGCTATATCCGTGAAAGCAATTACGGGGACTTGGAGAAAATTGGTTGGGC
CCGTTGCTCCCGCACGGATAAAGGCGTGCATGCTGCAAGGAACGTGGTGT
CGGCTAAGCTGGAGCTGTGGCAGGATGACATGGGGGGAGATAGACCCTAT
TGGAGCGAGCGGGCCGTGAAAGAGATCAATGCCTTCCTACCGGACGACAT
CCGCGTACACAGCTGCGCCAAAGTCACGAAGTCATTTCGGCCCCGGGATG
CGGTCAGTTTTCGCGAGTACGAGTATATTGTGCCTCTGGAGCTGTTGAGA
CCTTTTGAAGGAACGGGGAGGGAGGTCGAGGGGGAGGACGACGACGCATT
GATTGCTCGGTTCATTAACCTTTTGGTCCGTTATCAGGGCACGCACAACT
TCCATAACTTTACCAAGATTAAGAGTCGAGACCTGACGAGGGAGGAGAGG
GGGAAGGAAGGAGGGGATGAGGGGCAGGAAGCGAGGGATGCGCGGCAGAA
GGTGAAGGACGATTTGAAAGTGGATCATGTCCCGATCGGCGACCCTGCAG
ATGGGGTAACAACTGCTTTGTGGGACCTGACGCGGTACCAGGGAGTGCTA
AAAATGGTGCGCACAAACATTTATCGTTGTGAGGGGCGGCCGTTGGAGGT
GGATGGGAAGAAGTTCGTGGCCGTTACATTCCATGGGTCTTCCTTTTTGT
ACAATCAGATTCGATTACTGGTGGGAGGGGCAATCGGTGTAGCGACAGGT
TTGTTCCCGGAGACGGCGCTAGAAATGGCGTTGGAGAGCCCGTATCTGCT
ATACTCGCCCTTGGCGCCTGCGGAAGGGTTGTTTTTACGGCATATCACAT
TTGGACGGAAGAGTAAGAATCCAGTGGTCATGATGGAGAGGGATTTGCCG
ACGAAGGAGGAGATGCAGGCAGCAAACTGCCCGAACGTGTACGCGCTGCT
TTCGCACGAGGCGGTGGTACGCGCGGAAGAGTTTGAGAGGAAGCGGATTC
TGACTCAAATTAATCACGCGTGGACGAAGGAGTTGCAGGAAGGCTGGCGG
AGGTATGCGAGGTGTTTCAAGATCGAAAAGGAGGTGCAGGCAGCGAGGCA
GAGTATGGTGACTTGGATGGAGAGGGAGGGGAGGGAGGGGAGGAAGGAAG
GCAGGGAGGAGGAGGTAGTGGGACAGGGGGAGGTAGGAACGTTGGAGAAA
GAGATTTTTAGGAGCTATCGGAAATGGATGCCGCAGCGGTTTGCCACAGA
CTTGATTATCAAGTTTCGGTTGAAGCCGGGGAAGCAAGTGGGGAATGTCC
AGAGGGGCTTGGCGGTTGGGATGGCAGAGGGACGGGTGCCGACAGCGGCG
ACAACGGAGGAGTTGTTTGCATTGATGGAAGAGCAGGGCGGGGTGGCGGC
GTGGGAGGAGGCGGGAAAGAAGGTCCGGGGTCCAGGAGGGATTGGATGGG
GCGAGGGGGATGAGGAGGAGGAGGAGGAGGAAATGTGA

protein sequence of jgi.p|Nanoce1779_2|524688

>mRNA_2001-protein ID=mRNA_2001-protein|Name=jgi.p|Nanoce1779_2|524688|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDS
GYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQDDMGGDRPY
WSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLR
PFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLTREER
GKEGGDEGQEARDARQKVKDDLKVDHVPIGDPADGVTTALWDLTRYQGVL
KMVRTNIYRCEGRPLEVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATG
LFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLP
TKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAWTKELQEGWR
RYARCFKIEKEVQAARQSMVTWMEREGREGRKEGREEEVVGQGEVGTLEK
EIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAA
TTEELFALMEEQGGVAAWEEAGKKVRGPGGIGWGEGDEEEEEEEM*

mRNA from alignment at scaffold_4:540272..542353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2001 ID=mRNA_2001|Name=jgi.p|Nanoce1779_2|524688|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp|location=Sequence derived from alignment at scaffold_4:540272..542353+ (Nannochloropsis oceanica)
ATGCCAAAGGATAGGAAAAAGCGGCGCGTGGCTTTGGTTCTCGGGTACGT
CGGAACCAACTACTCTGGCCTACAGAAGTCCGAAACTGGACCTGATGAAG
CAGACGTGATGACAATCGAGTCAGTGCTCGAAAAAGCCTTGTTTGACTCA
GGCTATATCCGTGAAAGCAATTACGGGGACTTGGAGAAAATTGGTTGGGC
CCGTTGCTCCCGCACGGATAAAGGCGTGCATGCTGCAAGGAACGTGGTGT
CGGCTAAGCTGGAGCTGTGGCAGGATGACATGGGGGGAGATAGACCCTAT
TGGAGCGAGCGGGCCGTGAAAGAGATCAATGCCTTCCTACCGGACGACAT
CCGCGTACACAGCTGCGCCAAAGTCACGAAGTCATTTCGGCCCCGGGATG
CGGTCAGTTTTCGCGAGTACGAGTATATTGTGCCTCTGGAGCTGTTGAGA
CCTTTTGAAGGAACGGGGAGGGAGGTCGAGGGGGAGGACGACGACGCATT
GATTGCTCGGTTCATTAACCTTTTGGTCCGTTATCAGGGCACGCACAACT
TCCATAACTTTACCAAGATTAAGAGTCGAGACCTGGTGAAACGGTTGAAG
GCGAAGGTTGGAGGGAGCAGGGGGTGGATTCACCGGCATAATCGCAATGA
GGGCGAGGGAGAGATGGAGGGAGGGGGAGGGAGGAAAGCTATGGAAGAAG
TGATTGAAGAGAAGGCGGAGGAGTGGCATGGTAGCAAAGCTAAGCCCGGT
GGTGGCGACAGACAGGAGGAGGGAGGGGAAGAGGGCGAGGAGGAGGACGA
CTGGACAGCACCCAACACGGGGGGGCTGAGCACGGCGAAAGTCGATGGAA
TTCGTCGTTTTAATACCAATGTGGTATTAAACCCTTTATTTCAGATTCTG
CGGGCAAGTCCACAGAATCAACGAGCGAGGAATGACCCTGACAGGCGTAA
GACGAGGGAGGAGAGGGGGAAGGAAGGAGGGGATGAGGGGCAGGAAGCGA
GGGATGCGCGGCAGAAGGTGAAGGACGATTTGAAAGTGGATCATGTCCCG
ATCGGCGACCCTGCAGATGGGGTAACAACTGCTTTGTGGGACCTGACGCG
GTACCAGGGAGTGCTAAAAATGGTGCGCACAAACATTTATCGTTGTGAGG
GGCGGCCGTTGGAGGTGGATGGGAAGAAGTTCGTGGCCGTTACATTCCAT
GGGTCTTCCTTTTTGTACAATCAGATTCGATTACTGGTGGGAGGGGCAAT
CGGTGTAGCGACAGGTTTGTTCCCGGAGACGGCGCTAGAAATGGCGTTGG
AGAGCCCGTATCTGCTATACTCGCCCTTGGCGCCTGCGGAAGGGTTGTTT
TTACGGCATATCACATTTGGACGGAAGAGTAAGAATCCAGTGGTCATGAT
GGAGAGGGATTTGCCGACGAAGGAGGAGATGCAGGCAGCAAACTGCCCGA
ACGTGTACGCGCTGCTTTCGCACGAGGCGGTGGTACGCGCGGAAGAGTTT
GAGAGGAAGCGGATTCTGACTCAAATTAATCACGCGTGGACGAAGGAGTT
GCAGGAAGGCTGGCGGAGGTATGCGAGGTGTTTCAAGATCGAAAAGGAGG
TGCAGGCAGCGTTGGAAGAGAAATACGGTCAATGGAGGGAGAGCATCGAA
AAGTTGGAAGAGGCCAAAGCGGCACGGGAATTGTTCAGGAGGCAGAGTAT
GGTGACTTGGATGGAGAGGGAGGGGAGGGAGGGGAGGAAGGAAGGCAGGG
AGGAGGAGGTAGTGGGACAGGGGGAGGTAGGAACGTTGGAGAAAGAGATT
TTTAGGAGCTATCGGAAATGGATGCCGCAGCGGTTTGCCACAGACTTGAT
TATCAAGTTTCGGTTGAAGCCGGGGAAGCAAGTGGGGAATGTCCAGAGGG
GCTTGGCGGTTGGGATGGCAGAGGGACGGGTGCCGACAGCGGCGACAACG
GAGGAGTTGTTTGCATTGATGGAAGAGCAGGGCGGGGTGGCGGCGTGGGA
GGAGGCGGGAAAGAAGGTCCGGGGTCCAGGAGGGATTGGATGGGGCGAGG
GGGATGAGGAGGAGGAGGAGGAGGAAATGTGA

Coding sequence (CDS) from alignment at scaffold_4:540272..542353+

>mRNA_2001 ID=mRNA_2001|Name=jgi.p|Nanoce1779_2|524688|organism=Nannochloropsis oceanica|type=CDS|length=4914bp|location=Sequence derived from alignment at scaffold_4:540272..542353+ (Nannochloropsis oceanica)
ATGCCAAAGGATAGGAAAAAGCGGCGCGTGGCTTTGGTTCTCGGGTACGT
CGGAACCAACTACTCTGGCCTACAGAAGTCCGAAACTGGACCTGATGAAG
CAGACGTGATGACAATCGAGTCAGTGCTCGAAAAAGCCTTGTTTGACTCA
GGCTATATCCGTGAAAGCAATTACGGGGACTTGGAGAAAATTGGTTGGGC
CCGTTGCTCCCGCACGGATAAAGGCGTGCATGCTGCAAGGAACGTGGTGT
CGGCTAAGCTGGAGCTGTGGCAGGATGACATGGGGGGAGATAGACCCTAT
TGGAGCGAGCGGGCCGTGAAAGAGATCAATGCCTTCCTACCGGACGACAT
CCGCGTACACAGCTGCGCCAAAGTCACGAAGTCATTTCGGCCCCGGGATG
CGGTCAGTTTTCGCGAGTACGAGTATATTGTGCCTCTGGAGCTGTTGAGA
CCTTTTGAAGGAACGGGGAGGGAGGTCGAGGGGGAGGACGACGACGCATT
GATTGCTCGGTTCATTAACCTTTTGGTCCGTTATCAGGGCACGCACAACT
TCCATAACTTTACCAAGATTAAGAGTCGAGACCTGACGAGGGAGGAGAGG
GGGAAGGAAGGAGGGGATGAGGGGCAGGAAGCGAGGGATGCGCGGCAGAA
GGTGAAGGACGATTTGAAAGTGGATCATGTCCCGATCGGCGACCCTGCAG
ATGGGGTAACAACTGCTTTGTGGGACCTGACGCGGTACCAGGGAGTGCTA
AAAATGGTGCGCACAAACATTTATCGTTGTGAGGGGCGGCCGTTGGAGGT
GGATGGGAAGAAGTTCGTGGCCGTTACATTCCATGGGTCTTCCTTTTTGT
ACAATCAGATTCGATTACTGGTGGGAGGGGCAATCGGTGTAGCGACAGGT
TTGTTCCCGGAGACGGCGCTAGAAATGGCGTTGGAGAGCCCGTATCTGCT
ATACTCGCCCTTGGCGCCTGCGGAAGGGTTGTTTTTACGGCATATCACAT
TTGGACGGAAGAGTAAGAATCCAGTGGTCATGATGGAGAGGGATTTGCCG
ACGAAGGAGGAGATGCAGGCAGCAAACTGCCCGAACGTGTACGCGCTGCT
TTCGCACGAGGCGGTGGTACGCGCGGAAGAGTTTGAGAGGAAGCGGATTC
TGACTCAAATTAATCACGCGTGGACGAAGGAGTTGCAGGAAGGCTGGCGG
AGGTATGCGAGGTGTTTCAAGATCGAAAAGGAGGTGCAGGCAGCGAGGCA
GAGTATGGTGACTTGGATGGAGAGGGAGGGGAGGGAGGGGAGGAAGGAAG
GCAGGGAGGAGGAGGTAGTGGGACAGGGGGAGGTAGGAACGTTGGAGAAA
GAGATTTTTAGGAGCTATCGGAAATGGATGCCGCAGCGGTTTGCCACAGA
CTTGATTATCAAGTTTCGGTTGAAGCCGGGGAAGCAAGTGGGGAATGTCC
AGAGGGGCTTGGCGGTTGGGATGGCAGAGGGACGGGTGCCGACAGCGGCG
ACAACGGAGGAGTTGTTTGCATTGATGGAAGAGCAGGGCGGGGTGGCGGC
GTGGGAGGAGGCGGGAAAGAAGGTCCGGGGTCCAGGAGGGATTGGATGGG
GCGAGGGGGATGAGGAGGAGGAGGAGGAGGAAATGTGAATGCCAAAGGAT
AGGAAAAAGCGGCGCGTGGCTTTGGTTCTCGGGTACGTCGGAACCAACTA
CTCTGGCCTACAGAAGTCCGAAACTGGACCTGATGAAGCAGACGTGATGA
CAATCGAGTCAGTGCTCGAAAAAGCCTTGTTTGACTCAGGCTATATCCGT
GAAAGCAATTACGGGGACTTGGAGAAAATTGGTTGGGCCCGTTGCTCCCG
CACGGATAAAGGCGTGCATGCTGCAAGGAACGTGGTGTCGGCTAAGCTGG
AGCTGTGGCAGGATGACATGGGGGGAGATAGACCCTATTGGAGCGAGCGG
GCCGTGAAAGAGATCAATGCCTTCCTACCGGACGACATCCGCGTACACAG
CTGCGCCAAAGTCACGAAGTCATTTCGGCCCCGGGATGCGGTCAGTTTTC
GCGAGTACGAGTATATTGTGCCTCTGGAGCTGTTGAGACCTTTTGAAGGA
ACGGGGAGGGAGGTCGAGGGGGAGGACGACGACGCATTGATTGCTCGGTT
CATTAACCTTTTGGTCCGTTATCAGGGCACGCACAACTTCCATAACTTTA
CCAAGATTAAGAGTCGAGACCTGACGAGGGAGGAGAGGGGGAAGGAAGGA
GGGGATGAGGGGCAGGAAGCGAGGGATGCGCGGCAGAAGGTGAAGGACGA
TTTGAAAGTGGATCATGTCCCGATCGGCGACCCTGCAGATGGGGTAACAA
CTGCTTTGTGGGACCTGACGCGGTACCAGGGAGTGCTAAAAATGGTGCGC
ACAAACATTTATCGTTGTGAGGGGCGGCCGTTGGAGGTGGATGGGAAGAA
GTTCGTGGCCGTTACATTCCATGGGTCTTCCTTTTTGTACAATCAGATTC
GATTACTGGTGGGAGGGGCAATCGGTGTAGCGACAGGTTTGTTCCCGGAG
ACGGCGCTAGAAATGGCGTTGGAGAGCCCGTATCTGCTATACTCGCCCTT
GGCGCCTGCGGAAGGGTTGTTTTTACGGCATATCACATTTGGACGGAAGA
GTAAGAATCCAGTGGTCATGATGGAGAGGGATTTGCCGACGAAGGAGGAG
ATGCAGGCAGCAAACTGCCCGAACGTGTACGCGCTGCTTTCGCACGAGGC
GGTGGTACGCGCGGAAGAGTTTGAGAGGAAGCGGATTCTGACTCAAATTA
ATCACGCGTGGACGAAGGAGTTGCAGGAAGGCTGGCGGAGGTATGCGAGG
TGTTTCAAGATCGAAAAGGAGGTGCAGGCAGCGAGGCAGAGTATGGTGAC
TTGGATGGAGAGGGAGGGGAGGGAGGGGAGGAAGGAAGGCAGGGAGGAGG
AGGTAGTGGGACAGGGGGAGGTAGGAACGTTGGAGAAAGAGATTTTTAGG
AGCTATCGGAAATGGATGCCGCAGCGGTTTGCCACAGACTTGATTATCAA
GTTTCGGTTGAAGCCGGGGAAGCAAGTGGGGAATGTCCAGAGGGGCTTGG
CGGTTGGGATGGCAGAGGGACGGGTGCCGACAGCGGCGACAACGGAGGAG
TTGTTTGCATTGATGGAAGAGCAGGGCGGGGTGGCGGCGTGGGAGGAGGC
GGGAAAGAAGGTCCGGGGTCCAGGAGGGATTGGATGGGGCGAGGGGGATG
AGGAGGAGGAGGAGGAGGAAATGTGAATGCCAAAGGATAGGAAAAAGCGG
CGCGTGGCTTTGGTTCTCGGGTACGTCGGAACCAACTACTCTGGCCTACA
GAAGTCCGAAACTGGACCTGATGAAGCAGACGTGATGACAATCGAGTCAG
TGCTCGAAAAAGCCTTGTTTGACTCAGGCTATATCCGTGAAAGCAATTAC
GGGGACTTGGAGAAAATTGGTTGGGCCCGTTGCTCCCGCACGGATAAAGG
CGTGCATGCTGCAAGGAACGTGGTGTCGGCTAAGCTGGAGCTGTGGCAGG
ATGACATGGGGGGAGATAGACCCTATTGGAGCGAGCGGGCCGTGAAAGAG
ATCAATGCCTTCCTACCGGACGACATCCGCGTACACAGCTGCGCCAAAGT
CACGAAGTCATTTCGGCCCCGGGATGCGGTCAGTTTTCGCGAGTACGAGT
ATATTGTGCCTCTGGAGCTGTTGAGACCTTTTGAAGGAACGGGGAGGGAG
GTCGAGGGGGAGGACGACGACGCATTGATTGCTCGGTTCATTAACCTTTT
GGTCCGTTATCAGGGCACGCACAACTTCCATAACTTTACCAAGATTAAGA
GTCGAGACCTGACGAGGGAGGAGAGGGGGAAGGAAGGAGGGGATGAGGGG
CAGGAAGCGAGGGATGCGCGGCAGAAGGTGAAGGACGATTTGAAAGTGGA
TCATGTCCCGATCGGCGACCCTGCAGATGGGGTAACAACTGCTTTGTGGG
ACCTGACGCGGTACCAGGGAGTGCTAAAAATGGTGCGCACAAACATTTAT
CGTTGTGAGGGGCGGCCGTTGGAGGTGGATGGGAAGAAGTTCGTGGCCGT
TACATTCCATGGGTCTTCCTTTTTGTACAATCAGATTCGATTACTGGTGG
GAGGGGCAATCGGTGTAGCGACAGGTTTGTTCCCGGAGACGGCGCTAGAA
ATGGCGTTGGAGAGCCCGTATCTGCTATACTCGCCCTTGGCGCCTGCGGA
AGGGTTGTTTTTACGGCATATCACATTTGGACGGAAGAGTAAGAATCCAG
TGGTCATGATGGAGAGGGATTTGCCGACGAAGGAGGAGATGCAGGCAGCA
AACTGCCCGAACGTGTACGCGCTGCTTTCGCACGAGGCGGTGGTACGCGC
GGAAGAGTTTGAGAGGAAGCGGATTCTGACTCAAATTAATCACGCGTGGA
CGAAGGAGTTGCAGGAAGGCTGGCGGAGGTATGCGAGGTGTTTCAAGATC
GAAAAGGAGGTGCAGGCAGCGAGGCAGAGTATGGTGACTTGGATGGAGAG
GGAGGGGAGGGAGGGGAGGAAGGAAGGCAGGGAGGAGGAGGTAGTGGGAC
AGGGGGAGGTAGGAACGTTGGAGAAAGAGATTTTTAGGAGCTATCGGAAA
TGGATGCCGCAGCGGTTTGCCACAGACTTGATTATCAAGTTTCGGTTGAA
GCCGGGGAAGCAAGTGGGGAATGTCCAGAGGGGCTTGGCGGTTGGGATGG
CAGAGGGACGGGTGCCGACAGCGGCGACAACGGAGGAGTTGTTTGCATTG
ATGGAAGAGCAGGGCGGGGTGGCGGCGTGGGAGGAGGCGGGAAAGAAGGT
CCGGGGTCCAGGAGGGATTGGATGGGGCGAGGGGGATGAGGAGGAGGAGG
AGGAGGAAATGTGA

Synonyms

Publications