jgi.p|Nanoce1779_2|576523, mRNA_200 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576523
Unique NamemRNA_200
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2185
Alignment locationscaffold_3:497174..499358 -

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Properties
Property NameValue
TranscriptId576609
TrackFilteredModels2
ProteinId576523
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:497174..499358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576523gene_200Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576523mRNA_200-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_200CDS_200Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_200 ID=mRNA_200|Name=jgi.p|Nanoce1779_2|576523|organism=Nannochloropsis oceanica|type=mRNA|length=2185bp
TGGCTTTGGGACCGAAAAAGGTGGAGGGAGGAGGCTAGCTAGACGACCCA
TCACTCCTCCGTCCGCCCCACAGCAGCTTTCGCGTACTGGACGCACGGCA
CCAGGCCACAAACTGTTACTGCATGTGCGTTTTGGCTATAACGTCGGTGT
GCTGGGGGAGGATTTGGTTTGAGCATTGCGGAAGGCGCAATAAGCCACAT
TTGCTTGCTTAGATACTCTCTCACTCGGCCTTTTGTCCCAAAGTAGTCTC
GAAACCCGCAATCCCACCGCTCACCCATTCCACACATCTCCCATGTGTTC
ACTCAGACCCACACATAAGTGTATCCGTCAGGGAAGAAGCTATCCGTGAA
CGTAAGGCGACAGGGGATACGTCCCATCCATCACGCATAAGCTGCAGCAG
CAGACACGCACATAGCTAGGAATGGACCGCATAATAGGCTTTTTGGCCTC
AAGCGGGACACGTGCAGCCCCTGCAGAATGTCATGGGATTGGAGGTAGTG
ATGCGGACTTGGACTGGGAGGATTGGGACCCGAAGGCGGGGTCATTTGTG
CATCATATGATTGCGGGGAGTTTAGCTGGCATAGCCGAGCATACAGTTAT
GTATCCCGTGGACACCATCAAGACCTTTGTCCAGTGCCAAGAATGTAATG
TGACGGCAAATTGTATGAAGCAGCAGACGATGGCCGCGGCGACGGCGACG
GCGACTGTTGGTGATGGGAGACGGAGAGCTGCATCAGCGGTGGCAAGAGC
GGCGGTAGTCGTGGAAGGCGCGGGGATGACTTCCTTGGAGGCGGCCTCAC
GCTTGGTCCAACGAGAAGGGGTGTTTCGGCTTTGGCGAGGGGTGAGCTCA
ATGTTGTCAGCGTGTGTGCCTGCTCATGCTGCGTATTTTAGTGCACTCGA
ATCGTGTAAGGAAAGTTTTGGAGTGAATGGACGTGAGCACAACGTTGGAG
GAGCAGCAGCAGCTGGAGCAGTGGCGACGCTTTTTCACGATTCTATTATG
ACACCCATGGACGTGATAAAGCAACGTCTGCAGTTAGGGTACTATACGGG
CTTGCTGAATTGTGCTGCATCGATCGCGCGGCAGGAGGGGGTACGGGCGT
TCTATCTGAGCTTACCCGTGACTCTGTTTATGAATTTACCGTACGGCGGG
GTAATGGTCGCCGCGAATGAGAGCATCAAGCGCATGCTCAAGCCTGCGGG
CGACTATAACACAGGCACTTACCTTTTCGCCGGCTCAGGGGCCGGGGCCT
TGGCTGCTGCTGCGACTACTCCCTTAGATTTGATCAAGACGCGGCTCCAA
ACCCAAGTCACGTTGCGTGGGACCCCTCTGGCTGCTGCTGTCGTTGGCGC
TGATGTCGATATTTACGATCCCTGCACTCATAGAGGCAGCAAAGGAGCAG
GATCAGTGCATGCTGCATCCTCTTCGGGTCTACACCACCCTACTTCCGCT
GCCGCCACTCCTCTAGCCGCCAGCCACGGAGCAACCAGCCCACCGGGAAC
TGCGGGAGTGCGAGCAGCGCCTCACTCCCTTCCTACCACTGCTCCAGTGC
GGAGCCATGTGACATCCTCATCAGATGGGGGCTGTCTACGTGCAGAGCAC
ACACGATTAAGGTACAAGGGAATCCTGGACGCGGCCAGGCAGATCCACGC
AGCGGAGGGAGTGGTGGGATTTTTCCGAGGGATGTTGCCGCGGTTGCTGG
TACACACACCATCTGTTGCGATTAGTTGGACGACGTATGAGACAGTTAAG
GATTTCTTGAGAAGTAACTACCCGGCATCTTCCTCCTCTGCGTCGCTGAT
ACCGCCAGAGATCTGAGGTAGGGGTGGGGGAGTTGTGAGGAGAGAGGGGG
AGGGCGAGAGACAGGAGGGGGAGGAAAATTTGACGACGACACAAAGTTTG
TAGAGGCAGCAATAATATCGAGGGAGAGGAAAAGCACGAAAAATGTGCTT
GCAGCCATATGCTAAGTCACGTGAATGAAATCATCAAACCATGAAAGACG
GATAGATGGATGCATGAAATTTATATAGGACCACCGTGTACGCCGGCTTG
TCTCATGCGTGTGGTTGTGGAATCCGGATAACATGCGTCAAAGGTGTGTG
CTTGTAAAACATCTTTTGTTGACTCTTTTTCTTTGCACGTTTCAACACAC
TTCCACTTCCTTACATCTTTCCTTTCATCTTCTTC
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protein sequence of jgi.p|Nanoce1779_2|576523

>mRNA_200-protein ID=mRNA_200-protein|Name=jgi.p|Nanoce1779_2|576523|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MDRIIGFLASSGTRAAPAECHGIGGSDADLDWEDWDPKAGSFVHHMIAGS
LAGIAEHTVMYPVDTIKTFVQCQECNVTANCMKQQTMAAATATATVGDGR
RRAASAVARAAVVVEGAGMTSLEAASRLVQREGVFRLWRGVSSMLSACVP
AHAAYFSALESCKESFGVNGREHNVGGAAAAGAVATLFHDSIMTPMDVIK
QRLQLGYYTGLLNCAASIARQEGVRAFYLSLPVTLFMNLPYGGVMVAANE
SIKRMLKPAGDYNTGTYLFAGSGAGALAAAATTPLDLIKTRLQTQVTLRG
TPLAAAVVGADVDIYDPCTHRGSKGAGSVHAASSSGLHHPTSAAATPLAA
SHGATSPPGTAGVRAAPHSLPTTAPVRSHVTSSSDGGCLRAEHTRLRYKG
ILDAARQIHAAEGVVGFFRGMLPRLLVHTPSVAISWTTYETVKDFLRSNY
PASSSSASLIPPEI*
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mRNA from alignment at scaffold_3:497174..499358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_200 ID=mRNA_200|Name=jgi.p|Nanoce1779_2|576523|organism=Nannochloropsis oceanica|type=mRNA|length=2185bp|location=Sequence derived from alignment at scaffold_3:497174..499358- (Nannochloropsis oceanica)
TGGCTTTGGGACCGAAAAAGGTGGAGGGAGGAGGCTAGCTAGACGACCCA
TCACTCCTCCGTCCGCCCCACAGCAGCTTTCGCGTACTGGACGCACGGCA
CCAGGCCACAAACTGTTACTGCATGTGCGTTTTGGCTATAACGTCGGTGT
GCTGGGGGAGGATTTGGTTTGAGCATTGCGGAAGGCGCAATAAGCCACAT
TTGCTTGCTTAGATACTCTCTCACTCGGCCTTTTGTCCCAAAGTAGTCTC
GAAACCCGCAATCCCACCGCTCACCCATTCCACACATCTCCCATGTGTTC
ACTCAGACCCACACATAAGTGTATCCGTCAGGGAAGAAGCTATCCGTGAA
CGTAAGGCGACAGGGGATACGTCCCATCCATCACGCATAAGCTGCAGCAG
CAGACACGCACATAGCTAGGAATGGACCGCATAATAGGCTTTTTGGCCTC
AAGCGGGACACGTGCAGCCCCTGCAGAATGTCATGGGATTGGAGGTAGTG
ATGCGGACTTGGACTGGGAGGATTGGGACCCGAAGGCGGGGTCATTTGTG
CATCATATGATTGCGGGGAGTTTAGCTGGCATAGCCGAGCATACAGTTAT
GTATCCCGTGGACACCATCAAGACCTTTGTCCAGTGCCAAGAATGTAATG
TGACGGCAAATTGTATGAAGCAGCAGACGATGGCCGCGGCGACGGCGACG
GCGACTGTTGGTGATGGGAGACGGAGAGCTGCATCAGCGGTGGCAAGAGC
GGCGGTAGTCGTGGAAGGCGCGGGGATGACTTCCTTGGAGGCGGCCTCAC
GCTTGGTCCAACGAGAAGGGGTGTTTCGGCTTTGGCGAGGGGTGAGCTCA
ATGTTGTCAGCGTGTGTGCCTGCTCATGCTGCGTATTTTAGTGCACTCGA
ATCGTGTAAGGAAAGTTTTGGAGTGAATGGACGTGAGCACAACGTTGGAG
GAGCAGCAGCAGCTGGAGCAGTGGCGACGCTTTTTCACGATTCTATTATG
ACACCCATGGACGTGATAAAGCAACGTCTGCAGTTAGGGTACTATACGGG
CTTGCTGAATTGTGCTGCATCGATCGCGCGGCAGGAGGGGGTACGGGCGT
TCTATCTGAGCTTACCCGTGACTCTGTTTATGAATTTACCGTACGGCGGG
GTAATGGTCGCCGCGAATGAGAGCATCAAGCGCATGCTCAAGCCTGCGGG
CGACTATAACACAGGCACTTACCTTTTCGCCGGCTCAGGGGCCGGGGCCT
TGGCTGCTGCTGCGACTACTCCCTTAGATTTGATCAAGACGCGGCTCCAA
ACCCAAGTCACGTTGCGTGGGACCCCTCTGGCTGCTGCTGTCGTTGGCGC
TGATGTCGATATTTACGATCCCTGCACTCATAGAGGCAGCAAAGGAGCAG
GATCAGTGCATGCTGCATCCTCTTCGGGTCTACACCACCCTACTTCCGCT
GCCGCCACTCCTCTAGCCGCCAGCCACGGAGCAACCAGCCCACCGGGAAC
TGCGGGAGTGCGAGCAGCGCCTCACTCCCTTCCTACCACTGCTCCAGTGC
GGAGCCATGTGACATCCTCATCAGATGGGGGCTGTCTACGTGCAGAGCAC
ACACGATTAAGGTACAAGGGAATCCTGGACGCGGCCAGGCAGATCCACGC
AGCGGAGGGAGTGGTGGGATTTTTCCGAGGGATGTTGCCGCGGTTGCTGG
TACACACACCATCTGTTGCGATTAGTTGGACGACGTATGAGACAGTTAAG
GATTTCTTGAGAAGTAACTACCCGGCATCTTCCTCCTCTGCGTCGCTGAT
ACCGCCAGAGATCTGAGGTAGGGGTGGGGGAGTTGTGAGGAGAGAGGGGG
AGGGCGAGAGACAGGAGGGGGAGGAAAATTTGACGACGACACAAAGTTTG
TAGAGGCAGCAATAATATCGAGGGAGAGGAAAAGCACGAAAAATGTGCTT
GCAGCCATATGCTAAGTCACGTGAATGAAATCATCAAACCATGAAAGACG
GATAGATGGATGCATGAAATTTATATAGGACCACCGTGTACGCCGGCTTG
TCTCATGCGTGTGGTTGTGGAATCCGGATAACATGCGTCAAAGGTGTGTG
CTTGTAAAACATCTTTTGTTGACTCTTTTTCTTTGCACGTTTCAACACAC
TTCCACTTCCTTACATCTTTCCTTTCATCTTCTTC
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Coding sequence (CDS) from alignment at scaffold_3:497174..499358-

>mRNA_200 ID=mRNA_200|Name=jgi.p|Nanoce1779_2|576523|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_3:497174..499358- (Nannochloropsis oceanica)
ATGGACCGCATAATAGGCTTTTTGGCCTCAAGCGGGACACGTGCAGCCCC
TGCAGAATGTCATGGGATTGGAGGTAGTGATGCGGACTTGGACTGGGAGG
ATTGGGACCCGAAGGCGGGGTCATTTGTGCATCATATGATTGCGGGGAGT
TTAGCTGGCATAGCCGAGCATACAGTTATGTATCCCGTGGACACCATCAA
GACCTTTGTCCAGTGCCAAGAATGTAATGTGACGGCAAATTGTATGAAGC
AGCAGACGATGGCCGCGGCGACGGCGACGGCGACTGTTGGTGATGGGAGA
CGGAGAGCTGCATCAGCGGTGGCAAGAGCGGCGGTAGTCGTGGAAGGCGC
GGGGATGACTTCCTTGGAGGCGGCCTCACGCTTGGTCCAACGAGAAGGGG
TGTTTCGGCTTTGGCGAGGGGTGAGCTCAATGTTGTCAGCGTGTGTGCCT
GCTCATGCTGCGTATTTTAGTGCACTCGAATCGTGTAAGGAAAGTTTTGG
AGTGAATGGACGTGAGCACAACGTTGGAGGAGCAGCAGCAGCTGGAGCAG
TGGCGACGCTTTTTCACGATTCTATTATGACACCCATGGACGTGATAAAG
CAACGTCTGCAGTTAGGGTACTATACGGGCTTGCTGAATTGTGCTGCATC
GATCGCGCGGCAGGAGGGGGTACGGGCGTTCTATCTGAGCTTACCCGTGA
CTCTGTTTATGAATTTACCGTACGGCGGGGTAATGGTCGCCGCGAATGAG
AGCATCAAGCGCATGCTCAAGCCTGCGGGCGACTATAACACAGGCACTTA
CCTTTTCGCCGGCTCAGGGGCCGGGGCCTTGGCTGCTGCTGCGACTACTC
CCTTAGATTTGATCAAGACGCGGCTCCAAACCCAAGTCACGTTGCGTGGG
ACCCCTCTGGCTGCTGCTGTCGTTGGCGCTGATGTCGATATTTACGATCC
CTGCACTCATAGAGGCAGCAAAGGAGCAGGATCAGTGCATGCTGCATCCT
CTTCGGGTCTACACCACCCTACTTCCGCTGCCGCCACTCCTCTAGCCGCC
AGCCACGGAGCAACCAGCCCACCGGGAACTGCGGGAGTGCGAGCAGCGCC
TCACTCCCTTCCTACCACTGCTCCAGTGCGGAGCCATGTGACATCCTCAT
CAGATGGGGGCTGTCTACGTGCAGAGCACACACGATTAAGGTACAAGGGA
ATCCTGGACGCGGCCAGGCAGATCCACGCAGCGGAGGGAGTGGTGGGATT
TTTCCGAGGGATGTTGCCGCGGTTGCTGGTACACACACCATCTGTTGCGA
TTAGTTGGACGACGTATGAGACAGTTAAGGATTTCTTGAGAAGTAACTAC
CCGGCATCTTCCTCCTCTGCGTCGCTGATACCGCCAGAGATCTGA
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Synonyms
Publications