jgi.p|Nanoce1779_2|563653, mRNA_1999 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563653
Unique NamemRNA_1999
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length627
Alignment locationscaffold_4:537062..537688 +

Link to JBrowse

Properties
Property NameValue
TranscriptId563739
TrackFilteredModels2
ProteinId563653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:537062..537688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563653gene_1999Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563653mRNA_1999-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1999CDS_1999Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1999 ID=mRNA_1999|Name=jgi.p|Nanoce1779_2|563653|organism=Nannochloropsis oceanica|type=mRNA|length=627bp
ATGGTGCCCTCGGCCAAGATGAGGACATTGATCGGGATCCTGAGAGAGAC
CCGTCAAAGCGACCCCAGTGGTAAGTTTGTTGTGTTTTCTCAATTTCCCT
TTGGGACGATTGCGCCGTGCTTGGAGCAGGCAGGGTTTCCCTGCGTGAGT
GTGACGAGTCAGTGTCGCGCCGAACAACGACAGCAGGCCGTAGGAGCGTT
CACGAACAAAGCGGAGGTAAAAGTCATCTTGGTAGGGATGGGGGTGGGAG
CGGCGGGGCTGACACTGACGGCAGCGAAAACGTTGATTTTGCTGGAACCA
AGTCATAATCTGGCCGATGAGGCGCAAGCCATGAGTAGGATTCATCGAAT
TGGGCAAGAGGCGAAGTGTGTGAAAATTTGTGTGCTATTTACACGGGGAA
CAATAGAGGAGAGGATGCTGAAGATGAGGTTGGACGAGGGGGGGGCCGTA
GCTTTGCATCAAGGCGGAAGGGGAGGAGGAGGTGAGGGAGGGGGGGAAGA
AGGGGCAGCGTTGTCGGTCGCAGCCACGGGGGGAGGGGAGAAGAGCTTTC
AGTTTTCGCTGGCAAGTCTCCAGAGGCTGTTGGGGTTGGATGACGGGGTG
GAAAGGAGGGAGGAAAACCATGATTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|563653

>mRNA_1999-protein ID=mRNA_1999-protein|Name=jgi.p|Nanoce1779_2|563653|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MVPSAKMRTLIGILRETRQSDPSGKFVVFSQFPFGTIAPCLEQAGFPCVS
VTSQCRAEQRQQAVGAFTNKAEVKVILVGMGVGAAGLTLTAAKTLILLEP
SHNLADEAQAMSRIHRIGQEAKCVKICVLFTRGTIEERMLKMRLDEGGAV
ALHQGGRGGGGEGGGEEGAALSVAATGGGEKSFQFSLASLQRLLGLDDGV
ERREENHD*
back to top

mRNA from alignment at scaffold_4:537062..537688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1999 ID=mRNA_1999|Name=jgi.p|Nanoce1779_2|563653|organism=Nannochloropsis oceanica|type=mRNA|length=627bp|location=Sequence derived from alignment at scaffold_4:537062..537688+ (Nannochloropsis oceanica)
ATGGTGCCCTCGGCCAAGATGAGGACATTGATCGGGATCCTGAGAGAGAC
CCGTCAAAGCGACCCCAGTGGTAAGTTTGTTGTGTTTTCTCAATTTCCCT
TTGGGACGATTGCGCCGTGCTTGGAGCAGGCAGGGTTTCCCTGCGTGAGT
GTGACGAGTCAGTGTCGCGCCGAACAACGACAGCAGGCCGTAGGAGCGTT
CACGAACAAAGCGGAGGTAAAAGTCATCTTGGTAGGGATGGGGGTGGGAG
CGGCGGGGCTGACACTGACGGCAGCGAAAACGTTGATTTTGCTGGAACCA
AGTCATAATCTGGCCGATGAGGCGCAAGCCATGAGTAGGATTCATCGAAT
TGGGCAAGAGGCGAAGTGTGTGAAAATTTGTGTGCTATTTACACGGGGAA
CAATAGAGGAGAGGATGCTGAAGATGAGGTTGGACGAGGGGGGGGCCGTA
GCTTTGCATCAAGGCGGAAGGGGAGGAGGAGGTGAGGGAGGGGGGGAAGA
AGGGGCAGCGTTGTCGGTCGCAGCCACGGGGGGAGGGGAGAAGAGCTTTC
AGTTTTCGCTGGCAAGTCTCCAGAGGCTGTTGGGGTTGGATGACGGGGTG
GAAAGGAGGGAGGAAAACCATGATTAG
back to top

Coding sequence (CDS) from alignment at scaffold_4:537062..537688+

>mRNA_1999 ID=mRNA_1999|Name=jgi.p|Nanoce1779_2|563653|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_4:537062..537688+ (Nannochloropsis oceanica)
ATGGTGCCCTCGGCCAAGATGAGGACATTGATCGGGATCCTGAGAGAGAC
CCGTCAAAGCGACCCCAGTGGTAAGTTTGTTGTGTTTTCTCAATTTCCCT
TTGGGACGATTGCGCCGTGCTTGGAGCAGGCAGGGTTTCCCTGCGTGAGT
GTGACGAGTCAGTGTCGCGCCGAACAACGACAGCAGGCCGTAGGAGCGTT
CACGAACAAAGCGGAGGTAAAAGTCATCTTGGTAGGGATGGGGGTGGGAG
CGGCGGGGCTGACACTGACGGCAGCGAAAACGTTGATTTTGCTGGAACCA
AGTCATAATCTGGCCGATGAGGCGCAAGCCATGAGTAGGATTCATCGAAT
TGGGCAAGAGGCGAAGTGTGTGAAAATTTGTGTGCTATTTACACGGGGAA
CAATAGAGGAGAGGATGCTGAAGATGAGGTTGGACGAGGGGGGGGCCGTA
GCTTTGCATCAAGGCGGAAGGGGAGGAGGAGGTGAGGGAGGGGGGGAAGA
AGGGGCAGCGTTGTCGGTCGCAGCCACGGGGGGAGGGGAGAAGAGCTTTC
AGTTTTCGCTGGCAAGTCTCCAGAGGCTGTTGGGGTTGGATGACGGGGTG
GAAAGGAGGGAGGAAAACCATGATTAG
back to top
Synonyms
Publications