Properties
| Property Name | Value |
|---|
| TranscriptId | 578782 |
| Track | FilteredModels2 |
| ProteinId | 578696 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:528931..531001 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1997 ID=mRNA_1997|Name=jgi.p|Nanoce1779_2|578696|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ACAGGGAGTAACGGAGGGAGGGGTGGGCAGCGTTGCGTGCACCCAGTGAT
CGTTTCCCTTTTTTCCGCCAAGCCGCGCGACCCACTTGCACTGGAGAGCT
TCTTCCCTTCTGCCCCCGCCCATTTCTGCATCAAGCCCCTCCGCGCAAAA
GGAATCATGTCACGCCCTGTAATCGACCTCATAAGCCTCGCTGTAGCCTT
GGTGATGTGTATTCTAACCTTAGCGACCGCCTTTGTCGTGCCCCCATATT
CGCTGACGGCATCGTCAGCAGCAGGAGACGGAAGAAGAACAGTGTCGCCC
GCCGGCGACCCTTTGACCTGTCTGGCCGCCGCGAAGAAGAAATCTGCCGG
CAACACTAGTGGCAGTGGCGGATCTACCTCGGCGGCAACCCCCTCTTCCT
TGAAAAAGAGGGCCCGCAAGGGCGACGAGGGGCAGGCACAGCTGCGAGCA
TCCTTCATGAAGACGCCTGATTCCTCGGCTACCCGCGCTGATTTTGGCCT
GAGCGGACCGGGCTTCGAAATGGAGCTTTTACCACCCATCAACCCCGACG
CTGGTCCCGTCACTTCCACAAGCGGCAGCAGCGGCAAACGCGATAGGAAA
GGTGGTAGTAGCAGCACCAGCACTAGCACGAGCACGTCGACGGTGGAAGA
GGAGCATACGACGGACCATCACCTGCGGCTGTTGAGGCAGACAGGGAAAT
ACCCTGTCTTGGTCTTGAATACCGATGCTCAGCCGTTGAGTTATTTGCCG
TTGTCCATCATTCGGTGGCAGGAGGCGATCAAAGCCATCTTCCTAGAGCG
CGTCACGGTCCTCGCTTACTACGATTCTTTCATCCAGAGCACTGCCGGAC
CGTGGCAGCTTCCCTCCGTCATCTGCCTCAAGCAGTACCAAAAAGGTTGC
CGTGAGAGGCCCCCCCCCCTGAATCGCCGCAACATCTACATCCGCGACCA
TTATTTGTGCGCGTATTGCACGCAGCGGTTGAAGGCGACTGATCTAACCC
TGGACCACGTACTGCCTCGCTCCAAGGGAGGGAAAGGATCATGGGATAAC
CTCGTCACATGCTGCCGGCAGTGTAACCGCCGCAAGGGCAAGCGCACTGT
AAAGGAGCTGAAGGACATTGGCATGGTCTTGATGAACCCTCCACGCAAGC
CCAAGATGTCGGAATTGCAACGCCAAGCCCGTCTGTATCGCACAGCTGCT
GGTACATTTCCTCACGAAAGCTGGCAGACATATTTGGGGGGACCACCTGA
GGACCCCGAGGGGTTTCCATGAGAAGGAGGGGTGGAACGAGGGAACAACA
GAGGGACGGAGGAAGCAGGAATGGAGGCAGTGAGGGAGGAAAAGGAAGGC
CACGGCGGCACGGTCATTCTCCCACGAGAGGAGGGTTTCCTAGTCAGGCG
GAGCAGCCAAAATTCGTAAAAATATTTCCGAGCAAGGAAAGTAAGGAGAG
AGGAAGGGAGAGAGGGAGGGAGAGAGGGAGAGAGGGAGAAAGGGAAAGAG
GAAGGGAGCGAGAGAGGAACGGAGGGAGCGATAACATAG back to topprotein sequence of jgi.p|Nanoce1779_2|578696 >mRNA_1997-protein ID=mRNA_1997-protein|Name=jgi.p|Nanoce1779_2|578696|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MSRPVIDLISLAVALVMCILTLATAFVVPPYSLTASSAAGDGRRTVSPAG
DPLTCLAAAKKKSAGNTSGSGGSTSAATPSSLKKRARKGDEGQAQLRASF
MKTPDSSATRADFGLSGPGFEMELLPPINPDAGPVTSTSGSSGKRDRKGG
SSSTSTSTSTSTVEEEHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLS
IIRWQEAIKAIFLERVTVLAYYDSFIQSTAGPWQLPSVICLKQYQKGCRE
RPPPLNRRNIYIRDHYLCAYCTQRLKATDLTLDHVLPRSKGGKGSWDNLV
TCCRQCNRRKGKRTVKELKDIGMVLMNPPRKPKMSELQRQARLYRTAAGT
FPHESWQTYLGGPPEDPEGFP* back to topmRNA from alignment at scaffold_4:528931..531001+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1997 ID=mRNA_1997|Name=jgi.p|Nanoce1779_2|578696|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp|location=Sequence derived from alignment at scaffold_4:528931..531001+ (Nannochloropsis oceanica)
ACAGGGAGTAACGGAGGGAGGGGTGGGCAGCGTTGCGTGCACCCAGTGAT
CGTTTCCCTTTTTTCCGCCAAGCCGCGCGACCCACTTGCACTGGAGAGCT
TCTTCCCTTCTGCCCCCGCCCATTTCTGCATCAAGCCCCTCCGCGCAAAA
GGAATCATGTCACGCCCTGTAATCGACCTCATAAGCCTCGCTGTAGCCTT
GGTGATGTGTATTCTAACCTTAGCGACCGCCTTTGTCGTGCCCCCATATT
CGCTGACGGCATCGTCAGCAGCAGGAGACGGAAGAAGAACAGTGTCGCCC
GCCGGCGACCCTTTGACCTGTCTGGCCGCCGCGAAGAAGAAATCTGCCGG
CAACACTAGTGGCAGTGGCGGATCTACCTCGGCGGCAACCCCCTCTTCCT
TGAAAAAGAGGGCCCGCAAGGGCGACGAGGCAAGTGTGGGAGAGAAAGGA
GGGGGATCACATTCATTCCCACGGATGAATCTTCATTTTTACATCAACAT
CCGACTATTTTTTTTCAGTGACATTTGTTTTCCTCTTCTCATAAACAATG
AATCCTCAACCATGGTCCCTCACCCCCACGCTCTTCCATATTCCTCCTCA
AAAACAGGGGCAGGCACAGCTGCGAGCATCCTTCATGAAGACGCCTGATT
CCTCGGCTACCCGCGCTGATTTTGGCCTGAGCGGACCGGGCTTCGAAATG
GAGCTTTTACCACCCATCAACCCCGACGCTGGTCCCGTCACTTCCACAAG
CGGCAGCAGCGGCAAACGCGATAGGAAAGGTGGTAGTAGCAGCACCAGCA
CTAGCACGAGCACGTCGACGGTGGAAGAGGAGCATACGACGGACCATCAC
CTGCGGCTGTTGAGGCAGACAGGGAAATACCCTGTCTTGGTCTTGAATAC
CGATGCTCAGCCGTTGAGTTATTTGCCGTTGTCCATCATTCGGTGGCAGG
AGGTAGGTGGGTTCGAATTAACGGCAGGGAGGAATGGAGGGAGGGCCGTT
TAAATGTGTATTTTCATGCGCGAATGTGCACGCCCTATTCTCCATTCATC
CCCTCTCGCTACCATCCTTTTTGCAGGCGATCAAAGCCATCTTCCTAGAG
CGCGTCACGGTCCTCGCTTACTACGATTCTTTCATCCAGAGCACTGCCGG
ACCGTGGCAGCTTCCCTCCGTCATCTGCCTCAAGCAGTACCAAAAAGGTT
GCCGTGAGAGGCCCCCCCCCCTGAATCGCCGCAACATCTACATCCGCGAC
CATTATTTGTGCGCGTATTGCACGCAGCGGTTGAAGGCGACTGATCTAAC
CCTGGACCACGTACTGCCTCGCTCCAAGGGAGGGAAAGGATCATGGGATA
ACCTCGTCACATGTGGGTTACCCGGAATTCTGGTGGCAGTGCCTGTTTCT
TTTTTCCATTTCTGTGTCTGTCAGTGAGGGTGAGCATCTGTTTATGCATG
TCTTGACGCATCTTTTGACGTGCTTCTTCATCGTTCTAAGAAGTACGCGT
GTAACAAGTTTCATTTCACGTTGCAAAGTCCGTGCTCACCTTCCGTCCCT
CCCACCCTTCCTCTTTTCCTCCCTCCCTCCCTTTCCCTGCAGGCTGCCGG
CAGTGTAACCGCCGCAAGGGCAAGCGCACTGTAAAGGAGCTGAAGGACAT
TGGCATGGTCTTGATGAACCCTCCACGCAAGCCCAAGATGTCGGAATTGC
AACGCCAAGCCCGTCTGTATCGCACAGCTGCTGGTACATTTCCTCACGAA
AGCTGGCAGACATATTTGGGGGGACCACCTGAGGACCCCGAGGGGTTTCC
ATGAGAAGGAGGGGTGGAACGAGGGAACAACAGAGGGACGGAGGAAGCAG
GAATGGAGGCAGTGAGGGAGGAAAAGGAAGGCCACGGCGGCACGGTCATT
CTCCCACGAGAGGAGGGTTTCCTAGTCAGGCGGAGCAGCCAAAATTCGTA
AAAATATTTCCGAGCAAGGAAAGTAAGGAGAGAGGAAGGGAGAGAGGGAG
GGAGAGAGGGAGAGAGGGAGAAAGGGAAAGAGGAAGGGAGCGAGAGAGGA
ACGGAGGGAGCGATAACATAG back to topCoding sequence (CDS) from alignment at scaffold_4:528931..531001+ >mRNA_1997 ID=mRNA_1997|Name=jgi.p|Nanoce1779_2|578696|organism=Nannochloropsis oceanica|type=CDS|length=4464bp|location=Sequence derived from alignment at scaffold_4:528931..531001+ (Nannochloropsis oceanica)
ATGTCACGCCCTGTAATCGACCTCATAAGCCTCGCTGTAGCCTTGGTGAT
GTGTATTCTAACCTTAGCGACCGCCTTTGTCGTGCCCCCATATTCGCTGA
CGGCATCGTCAGCAGCAGGAGACGGAAGAAGAACAGTGTCGCCCGCCGGC
GACCCTTTGACCTGTCTGGCCGCCGCGAAGAAGAAATCTGCCGGCAACAC
TAGTGGCAGTGGCGGATCTACCTCGGCGGCAACCCCCTCTTCCTTGAAAA
AGAGGGCCCGCAAGGGCGACGAGGGGCAGGCACAGCTGCGAGCATCCTTC
ATGAAGACGCCTGATTCCTCGGCTACCCGCGCTGATTTTGGCCTGAGCGG
ACCGGGCTTCGAAATGGAGCTTTTACCACCCATCAACCCCGACGCTGGTC
CCGTCACTTCCACAAGCGGCAGCAGCGGCAAACGCGATAGGAAAGGTGGT
AGTAGCAGCACCAGCACTAGCACGAGCACGTCGACGGTGGAAGAGGAGCA
TACGACGGACCATCACCTGCGGCTGTTGAGGCAGACAGGGAAATACCCTG
TCTTGGTCTTGAATACCGATGCTCAGCCGTTGAGTTATTTGCCGTTGTCC
ATCATTCGGTGGCAGGAGGCGATCAAAGCCATCTTCCTAGAGCGCGTCAC
GGTCCTCGCTTACTACGATTCTTTCATCCAGAGCACTGCCGGACCGTGGC
AGCTTCCCTCCGTCATCTGCCTCAAGCAGTACCAAAAAGGTTGCCGTGAG
AGGCCCCCCCCCCTGAATCGCCGCAACATCTACATCCGCGACCATTATTT
GTGCGCGTATTGCACGCAGCGGTTGAAGGCGACTGATCTAACCCTGGACC
ACGTACTGCCTCGCTCCAAGGGAGGGAAAGGATCATGGGATAACCTCGTC
ACATGCTGCCGGCAGTGTAACCGCCGCAAGGGCAAGCGCACTGTAAAGGA
GCTGAAGGACATTGGCATGGTCTTGATGAACCCTCCACGCAAGCCCAAGA
TGTCGGAATTGCAACGCCAAGCCCGTCTGTATCGCACAGCTGCTGGTACA
TTTCCTCACGAAAGCTGGCAGACATATTTGGGGGGACCACCTGAGGACCC
CGAGGGGTTTCCATGAATGTCACGCCCTGTAATCGACCTCATAAGCCTCG
CTGTAGCCTTGGTGATGTGTATTCTAACCTTAGCGACCGCCTTTGTCGTG
CCCCCATATTCGCTGACGGCATCGTCAGCAGCAGGAGACGGAAGAAGAAC
AGTGTCGCCCGCCGGCGACCCTTTGACCTGTCTGGCCGCCGCGAAGAAGA
AATCTGCCGGCAACACTAGTGGCAGTGGCGGATCTACCTCGGCGGCAACC
CCCTCTTCCTTGAAAAAGAGGGCCCGCAAGGGCGACGAGGGGCAGGCACA
GCTGCGAGCATCCTTCATGAAGACGCCTGATTCCTCGGCTACCCGCGCTG
ATTTTGGCCTGAGCGGACCGGGCTTCGAAATGGAGCTTTTACCACCCATC
AACCCCGACGCTGGTCCCGTCACTTCCACAAGCGGCAGCAGCGGCAAACG
CGATAGGAAAGGTGGTAGTAGCAGCACCAGCACTAGCACGAGCACGTCGA
CGGTGGAAGAGGAGCATACGACGGACCATCACCTGCGGCTGTTGAGGCAG
ACAGGGAAATACCCTGTCTTGGTCTTGAATACCGATGCTCAGCCGTTGAG
TTATTTGCCGTTGTCCATCATTCGGTGGCAGGAGGCGATCAAAGCCATCT
TCCTAGAGCGCGTCACGGTCCTCGCTTACTACGATTCTTTCATCCAGAGC
ACTGCCGGACCGTGGCAGCTTCCCTCCGTCATCTGCCTCAAGCAGTACCA
AAAAGGTTGCCGTGAGAGGCCCCCCCCCCTGAATCGCCGCAACATCTACA
TCCGCGACCATTATTTGTGCGCGTATTGCACGCAGCGGTTGAAGGCGACT
GATCTAACCCTGGACCACGTACTGCCTCGCTCCAAGGGAGGGAAAGGATC
ATGGGATAACCTCGTCACATGCTGCCGGCAGTGTAACCGCCGCAAGGGCA
AGCGCACTGTAAAGGAGCTGAAGGACATTGGCATGGTCTTGATGAACCCT
CCACGCAAGCCCAAGATGTCGGAATTGCAACGCCAAGCCCGTCTGTATCG
CACAGCTGCTGGTACATTTCCTCACGAAAGCTGGCAGACATATTTGGGGG
GACCACCTGAGGACCCCGAGGGGTTTCCATGAATGTCACGCCCTGTAATC
GACCTCATAAGCCTCGCTGTAGCCTTGGTGATGTGTATTCTAACCTTAGC
GACCGCCTTTGTCGTGCCCCCATATTCGCTGACGGCATCGTCAGCAGCAG
GAGACGGAAGAAGAACAGTGTCGCCCGCCGGCGACCCTTTGACCTGTCTG
GCCGCCGCGAAGAAGAAATCTGCCGGCAACACTAGTGGCAGTGGCGGATC
TACCTCGGCGGCAACCCCCTCTTCCTTGAAAAAGAGGGCCCGCAAGGGCG
ACGAGGGGCAGGCACAGCTGCGAGCATCCTTCATGAAGACGCCTGATTCC
TCGGCTACCCGCGCTGATTTTGGCCTGAGCGGACCGGGCTTCGAAATGGA
GCTTTTACCACCCATCAACCCCGACGCTGGTCCCGTCACTTCCACAAGCG
GCAGCAGCGGCAAACGCGATAGGAAAGGTGGTAGTAGCAGCACCAGCACT
AGCACGAGCACGTCGACGGTGGAAGAGGAGCATACGACGGACCATCACCT
GCGGCTGTTGAGGCAGACAGGGAAATACCCTGTCTTGGTCTTGAATACCG
ATGCTCAGCCGTTGAGTTATTTGCCGTTGTCCATCATTCGGTGGCAGGAG
GCGATCAAAGCCATCTTCCTAGAGCGCGTCACGGTCCTCGCTTACTACGA
TTCTTTCATCCAGAGCACTGCCGGACCGTGGCAGCTTCCCTCCGTCATCT
GCCTCAAGCAGTACCAAAAAGGTTGCCGTGAGAGGCCCCCCCCCCTGAAT
CGCCGCAACATCTACATCCGCGACCATTATTTGTGCGCGTATTGCACGCA
GCGGTTGAAGGCGACTGATCTAACCCTGGACCACGTACTGCCTCGCTCCA
AGGGAGGGAAAGGATCATGGGATAACCTCGTCACATGCTGCCGGCAGTGT
AACCGCCGCAAGGGCAAGCGCACTGTAAAGGAGCTGAAGGACATTGGCAT
GGTCTTGATGAACCCTCCACGCAAGCCCAAGATGTCGGAATTGCAACGCC
AAGCCCGTCTGTATCGCACAGCTGCTGGTACATTTCCTCACGAAAGCTGG
CAGACATATTTGGGGGGACCACCTGAGGACCCCGAGGGGTTTCCATGAAT
GTCACGCCCTGTAATCGACCTCATAAGCCTCGCTGTAGCCTTGGTGATGT
GTATTCTAACCTTAGCGACCGCCTTTGTCGTGCCCCCATATTCGCTGACG
GCATCGTCAGCAGCAGGAGACGGAAGAAGAACAGTGTCGCCCGCCGGCGA
CCCTTTGACCTGTCTGGCCGCCGCGAAGAAGAAATCTGCCGGCAACACTA
GTGGCAGTGGCGGATCTACCTCGGCGGCAACCCCCTCTTCCTTGAAAAAG
AGGGCCCGCAAGGGCGACGAGGGGCAGGCACAGCTGCGAGCATCCTTCAT
GAAGACGCCTGATTCCTCGGCTACCCGCGCTGATTTTGGCCTGAGCGGAC
CGGGCTTCGAAATGGAGCTTTTACCACCCATCAACCCCGACGCTGGTCCC
GTCACTTCCACAAGCGGCAGCAGCGGCAAACGCGATAGGAAAGGTGGTAG
TAGCAGCACCAGCACTAGCACGAGCACGTCGACGGTGGAAGAGGAGCATA
CGACGGACCATCACCTGCGGCTGTTGAGGCAGACAGGGAAATACCCTGTC
TTGGTCTTGAATACCGATGCTCAGCCGTTGAGTTATTTGCCGTTGTCCAT
CATTCGGTGGCAGGAGGCGATCAAAGCCATCTTCCTAGAGCGCGTCACGG
TCCTCGCTTACTACGATTCTTTCATCCAGAGCACTGCCGGACCGTGGCAG
CTTCCCTCCGTCATCTGCCTCAAGCAGTACCAAAAAGGTTGCCGTGAGAG
GCCCCCCCCCCTGAATCGCCGCAACATCTACATCCGCGACCATTATTTGT
GCGCGTATTGCACGCAGCGGTTGAAGGCGACTGATCTAACCCTGGACCAC
GTACTGCCTCGCTCCAAGGGAGGGAAAGGATCATGGGATAACCTCGTCAC
ATGCTGCCGGCAGTGTAACCGCCGCAAGGGCAAGCGCACTGTAAAGGAGC
TGAAGGACATTGGCATGGTCTTGATGAACCCTCCACGCAAGCCCAAGATG
TCGGAATTGCAACGCCAAGCCCGTCTGTATCGCACAGCTGCTGGTACATT
TCCTCACGAAAGCTGGCAGACATATTTGGGGGGACCACCTGAGGACCCCG
AGGGGTTTCCATGA back to top
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