jgi.p|Nanoce1779_2|578685, mRNA_1994 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578685
Unique NamemRNA_1994
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1643
Alignment locationscaffold_4:522512..524272 -

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Properties
Property NameValue
TranscriptId578771
TrackFilteredModels2
ProteinId578685
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:522512..524272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578685gene_1994Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578685mRNA_1994-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1994CDS_1994Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1994 ID=mRNA_1994|Name=jgi.p|Nanoce1779_2|578685|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp
GGAAAGTGCGTCGAGGTTCGCCATATAACGCATCGCTACTTTCATCGACC
CCCCAAAAAACGTGCCCGCCTCCACTTGCGTGCAGGACACAATCTTGCAC
CAACAAGAACATGCTCGGCAAGACAAGCTCCTCGAGGGTAGTAGATTTCA
TGTGGCTCTTGTGCCCCCAAGCAGGGCAATCAAGGTATTACGTCCCAAGT
CCAAGCCCGCCAGTCTGCGGCCTCTCGTGGCCTCTGAAGTCTGCATAATC
TGAACACTTTCTCACATCATTGCTCCCTTTGCATTCTGACATCTAAAAAA
GTAAAATTATAAAGCTGGAACAAGCAAGCCTAGCAGATGATGTTCAACAA
GACAGGGATTTGCAATGGTAGCACTAGTGCGGCTGGTGGAGGATGGGGAT
GGTATCTGGTGGAGGATATGGCCAGACCTTACGTGGCATGGGTGGATACG
CATTGGCTGACCTTTACGGAAATGATAACATGGTCCGATGCCACAATTTT
TGCGGTGGGTACCTACGCCATCCATCAAATTATTGCCGCCACCTTTTCCC
TCTTCTACTGTCTCCTGCATTCCCACGGCTTGCTCCTGCGATACCGCATC
CAGACCGCCGAACCATTTGACAAAGCGCTTTTTCAATTGGCTACACGTCA
TTTGATTTGGCGCGCTCTCGTTAAAGAATTTCCGGTGATGCTTATCATGT
ACTCTGGCTTCCACTATTCTGGAACCAAGGTCCGCGCGCCCTTGCCTTCC
ATCACACGCATTCTCGGAGACTGGATGTTGTGTTGGCTGTGGACAGAAAC
AACGTTTTACTGGACACATAGATTGTTCCACCACCGTTGGTTCTACAAGC
GCTTCCATAAGCAGCATCACACATTCAAGACCAGTGTTGCTTTAAACACA
GAATATGCCCACCCCCTCGAACATCTCATCAGCAACGTCCTCACCACCTT
CGGAGGCCCCCTTCTCCTGGGTTCGCATGTACTGGTGTTTTGGTCTTACT
TCGCTTTTCGCCTCTGGGAGACGTTTGATGGCCATTCAGGATATACCATC
CCGATCCTTTCCCCCTTCTCTGTGATGCCTTGGTGGACGGGCCCGCAGAT
GCATGATTTCCACCATTCGCACAATATTGGTGCATTTGGCACCATGACGT
GTTTTTGGGACTGGGTGTGTGGAACGGATAAGGCATATCGGATGTTTGCC
GCGAAGGAGAAGGAGAGGCAAGGGCGCAAAGAGAAAGAGGGCAGAGCAAA
AAAAGAAGTAAAGGAAGAGGAGGAATCGAAAATGAAAAAGAAGATGTGTG
AAGAAAGTGTGTGGAAGAAAACCACGAAAATGTATACACAGTAGATTAAG
AAAGGAATAAGAGAGAAAACGATCATGTTTTAACGCATGCACTAGTATAG
AGTAAAAGAGACGAGCTGCCCTCTTCTGTGGATAGTTTGACGCTTCGAGA
GAACAGGTAGAGGCCGTGAAATGAGTTGGCAGTGAAATTTGAGGGCTTGT
ATTGGTGAAAAAATGTAAACAGCTGTGCGAAGAGGAGGGGTGGTTGCTCC
CGAAAATTGCCTTAAACGTACTTTGCATAAAGAAACAATATAAAAGGAGC
AATTCTCGAATTATGTAGCTTAACGAGCCATCAAGAAGCCACC
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protein sequence of jgi.p|Nanoce1779_2|578685

>mRNA_1994-protein ID=mRNA_1994-protein|Name=jgi.p|Nanoce1779_2|578685|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MMFNKTGICNGSTSAAGGGWGWYLVEDMARPYVAWVDTHWLTFTEMITWS
DATIFAVGTYAIHQIIAATFSLFYCLLHSHGLLLRYRIQTAEPFDKALFQ
LATRHLIWRALVKEFPVMLIMYSGFHYSGTKVRAPLPSITRILGDWMLCW
LWTETTFYWTHRLFHHRWFYKRFHKQHHTFKTSVALNTEYAHPLEHLISN
VLTTFGGPLLLGSHVLVFWSYFAFRLWETFDGHSGYTIPILSPFSVMPWW
TGPQMHDFHHSHNIGAFGTMTCFWDWVCGTDKAYRMFAAKEKERQGRKEK
EGRAKKEVKEEEESKMKKKMCEESVWKKTTKMYTQ*
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mRNA from alignment at scaffold_4:522512..524272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1994 ID=mRNA_1994|Name=jgi.p|Nanoce1779_2|578685|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at scaffold_4:522512..524272- (Nannochloropsis oceanica)
GGAAAGTGCGTCGAGGTTCGCCATATAACGCATCGCTACTTTCATCGACC
CCCCAAAAAACGTGCCCGCCTCCACTTGCGTGCAGGACACAATCTTGCAC
CAACAAGAACATGCTCGGCAAGACAAGCTCCTCGAGGGTAGTAGATTTCA
TGTGGCTCTTGTGCCCCCAAGCAGGGCAATCAAGGTATTACGTCCCAAGT
CCAAGCCCGCCAGTCTGCGGCCTCTCGTGGCCTCTGAAGTCTGCATAATC
TGAACACTTTCTCACATCATTGCTCCCTTTGCATTCTGACATCTAAAAAA
GTAAAATTATAAAGCTGGAACAAGCAAGCCTAGCAGATGATGTTCAACAA
GACAGGGATTTGCAATGGTAGCACTAGTGCGGCTGGTGGAGGATGGGGAT
GGTATCTGGTGGAGGATATGGCCAGACCTTACGTGGCATGGGTGGATACG
CATTGGCTGACCTTTACGGAAATGATAACATGGTCCGATGCCACAATTTT
TGCGGTGGGTACCTACGCCATCCATCAAATTATTGCCGCCACCTTTTCCC
TCTTCTACTGTCTCCTGCATTCCCACGGCTTGCTCCTGCGATACCGCATC
CAGACCGCCGAACCATTTGACAAAGCGCTTTTTCAATTGGCTACACGTCA
TTTGATTTGGCGCGCTCTCGTTAAAGAATTTCCGGTGATGCTTATCATGT
ACTCTGGCTTCCACTATTCTGGAACCAAGGTCCGCGCGCCCTTGCCTTCC
ATCACACGCATTCTCGGAGACTGGATGTTGTGTTGGCTGTGGACAGAAAC
AACGTTTTACTGGACACATAGATGTATGTAGGAAAGGGAGGGTAAGAGGC
AGATGAGGGATGGGTCTTCCTCATTTTCATTTTCGCGCTTTCATTAAATT
TCTCAATCCATCCAATTCCCTACCTCTCTCTTCCTCGTTAGTGTTCCACC
ACCGTTGGTTCTACAAGCGCTTCCATAAGCAGCATCACACATTCAAGACC
AGTGTTGCTTTAAACACAGAATATGCCCACCCCCTCGAACATCTCATCAG
CAACGTCCTCACCACCTTCGGAGGCCCCCTTCTCCTGGGTTCGCATGTAC
TGGTGTTTTGGTCTTACTTCGCTTTTCGCCTCTGGGAGACGTTTGATGGC
CATTCAGGATATACCATCCCGATCCTTTCCCCCTTCTCTGTGATGCCTTG
GTGGACGGGCCCGCAGATGCATGATTTCCACCATTCGCACAATATTGGTG
CATTTGGCACCATGACGTGTTTTTGGGACTGGGTGTGTGGAACGGATAAG
GCATATCGGATGTTTGCCGCGAAGGAGAAGGAGAGGCAAGGGCGCAAAGA
GAAAGAGGGCAGAGCAAAAAAAGAAGTAAAGGAAGAGGAGGAATCGAAAA
TGAAAAAGAAGATGTGTGAAGAAAGTGTGTGGAAGAAAACCACGAAAATG
TATACACAGTAGATTAAGAAAGGAATAAGAGAGAAAACGATCATGTTTTA
ACGCATGCACTAGTATAGAGTAAAAGAGACGAGCTGCCCTCTTCTGTGGA
TAGTTTGACGCTTCGAGAGAACAGGTAGAGGCCGTGAAATGAGTTGGCAG
TGAAATTTGAGGGCTTGTATTGGTGAAAAAATGTAAACAGCTGTGCGAAG
AGGAGGGGTGGTTGCTCCCGAAAATTGCCTTAAACGTACTTTGCATAAAG
AAACAATATAAAAGGAGCAATTCTCGAATTATGTAGCTTAACGAGCCATC
AAGAAGCCACC
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Coding sequence (CDS) from alignment at scaffold_4:522512..524272-

>mRNA_1994 ID=mRNA_1994|Name=jgi.p|Nanoce1779_2|578685|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_4:522512..524272- (Nannochloropsis oceanica)
TGTTCCACCACCGTTGGTTCTACAAGCGCTTCCATAAGCAGCATCACACA
TTCAAGACCAGTGTTGCTTTAAACACAGAATATGCCCACCCCCTCGAACA
TCTCATCAGCAACGTCCTCACCACCTTCGGAGGCCCCCTTCTCCTGGGTT
CGCATGTACTGGTGTTTTGGTCTTACTTCGCTTTTCGCCTCTGGGAGACG
TTTGATGGCCATTCAGGATATACCATCCCGATCCTTTCCCCCTTCTCTGT
GATGCCTTGGTGGACGGGCCCGCAGATGCATGATTTCCACCATTCGCACA
ATATTGGTGCATTTGGCACCATGACGTGTTTTTGGGACTGGGTGTGTGGA
ACGGATAAGGCATATCGGATGTTTGCCGCGAAGGAGAAGGAGAGGCAAGG
GCGCAAAGAGAAAGAGGGCAGAGCAAAAAAAGAAGTAAAGGAAGAGGAGG
AATCGAAAATGAAAAAGAAGATGTGTGAAGAAAGTGTGTGGAAGAAAACC
ACGAAAATGTATACACAGTAGATGATGTTCAACAAGACAGGGATTTGCAA
TGGTAGCACTAGTGCGGCTGGTGGAGGATGGGGATGGTATCTGGTGGAGG
ATATGGCCAGACCTTACGTGGCATGGGTGGATACGCATTGGCTGACCTTT
ACGGAAATGATAACATGGTCCGATGCCACAATTTTTGCGGTGGGTACCTA
CGCCATCCATCAAATTATTGCCGCCACCTTTTCCCTCTTCTACTGTCTCC
TGCATTCCCACGGCTTGCTCCTGCGATACCGCATCCAGACCGCCGAACCA
TTTGACAAAGCGCTTTTTCAATTGGCTACACGTCATTTGATTTGGCGCGC
TCTCGTTAAAGAATTTCCGGTGATGCTTATCATGTACTCTGGCTTCCACT
ATTCTGGAACCAAGGTCCGCGCGCCCTTGCCTTCCATCACACGCATTCTC
GGAGACTGGATGTTGTGTTGGCTGTGGACAGAAACAACGTTTTACTGGAC
ACATAGATTGTTCCACCACCGTTGGTTCTACAAGCGCTTCCATAAGCAGC
ATCACACATTCAAGACCAGTGTTGCTTTAAACACAGAATATGCCCACCCC
CTCGAACATCTCATCAGCAACGTCCTCACCACCTTCGGAGGCCCCCTTCT
CCTGGGTTCGCATGTACTGGTGTTTTGGTCTTACTTCGCTTTTCGCCTCT
GGGAGACGTTTGATGGCCATTCAGGATATACCATCCCGATCCTTTCCCCC
TTCTCTGTGATGCCTTGGTGGACGGGCCCGCAGATGCATGATTTCCACCA
TTCGCACAATATTGGTGCATTTGGCACCATGACGTGTTTTTGGGACTGGG
TGTGTGGAACGGATAAGGCATATCGGATGTTTGCCGCGAAGGAGAAGGAG
AGGCAAGGGCGCAAAGAGAAAGAGGGCAGAGCAAAAAAAGAAGTAAAGGA
AGAGGAGGAATCGAAAATGAAAAAGAAGATGTGTGAAGAAAGTGTGTGGA
AGAAAACCACGAAAATGTATACACAGTAGATGATGTTCAACAAGACAGGG
ATTTGCAATGGTAGCACTAGTGCGGCTGGTGGAGGATGGGGATGGTATCT
GGTGGAGGATATGGCCAGACCTTACGTGGCATGGGTGGATACGCATTGGC
TGACCTTTACGGAAATGATAACATGGTCCGATGCCACAATTTTTGCGGTG
GGTACCTACGCCATCCATCAAATTATTGCCGCCACCTTTTCCCTCTTCTA
CTGTCTCCTGCATTCCCACGGCTTGCTCCTGCGATACCGCATCCAGACCG
CCGAACCATTTGACAAAGCGCTTTTTCAATTGGCTACACGTCATTTGATT
TGGCGCGCTCTCGTTAAAGAATTTCCGGTGATGCTTATCATGTACTCTGG
CTTCCACTATTCTGGAACCAAGGTCCGCGCGCCCTTGCCTTCCATCACAC
GCATTCTCGGAGACTGGATGTTGTGTTGGCTGTGGACAGAAACAACGTTT
TACTGGACACATAGAT
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Synonyms
Publications