jgi.p|Nanoce1779_2|524625, mRNA_1993 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524625
Unique NamemRNA_1993
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1884
Alignment locationscaffold_4:519295..521178 -

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Properties
Property NameValue
TranscriptId524711
TrackFilteredModels2
ProteinId524625
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:519295..521178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524625gene_1993Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1993CDS_1993Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524625mRNA_1993-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1993 ID=mRNA_1993|Name=jgi.p|Nanoce1779_2|524625|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp
ATGTCAGAAGGAGAGCGACTCCAACTGCAGTCTCAAATGCTCAAACTTCA
GGCTGAGAAGCTGCGTTTGGAAGCCGAGAAGGAGCAGATCAAGATGGAAC
GGGAAGCTCTCCTGAAGAAGCAGAAAAAGCAGCAAGACACGGACCGGCTT
GTCGAGAAACTCCGTGCCGCCCAGTCCTCCCCCGCCGGGATGGCCTCTCC
AGAAGCCGCCGCCGCGGAACTCAAGGCCGTGGTCAAGACGTACATCCGCA
ACATCGACGCTGATTCCCTCGCACGGATTCGTGATTTGAGCTCTGAAGCG
GACACGCCTGAGCAGGCCCTTGCGTACAAGAACCTGGCTGATGCTGTATT
GAAAGCATTGAATGAGTTGGATGCGCGTCAAGCCAAGGAGATTCGGGAAG
AGCTCGCGTTTCGCTTCAAGGACGAGACGCCCCCGACCCCGTCGTCCAAC
GCGCCTTTTGATCAGTTTTCGGATGTGGAAGCGGCGATGAGGAATGCCTC
CGGGGGTACTTCGTCCATCGATCAGCTAACTCAAGAAATGATGCGAAACA
ACTCTCGCGGGTTTTCCACCATTTACGCCATCAACCTCCCCCAATGGCTC
CCGCGGGAGTTCATGCGTACCCTCGAATCATTCGAGCCTCTTCTGGACGA
GGACGTGCGGACCTTGCGGACAGAGATTTTCAAGATGGAGACGTTTTTTG
TGACAGACGTCGATAAGACGCCTCTAGCCGTCGCTTACATGGGCACTCTC
CGGAAGCCTTCGGAGGAGGTTTTCAAAGACGTGGAGAAGAGACTGCAAGC
CTTGGAGGGGGGATTGAAGGATCGGGTGCAATTGTTTTTGTTCGAGAACC
CGCGTCCACAGATGCAGGAGATGGGGGGGATGATGGGAGGAGGGGGGGAT
GCGGAAAACCCCGAAGTGATGTTTATGGCGGTGTCGACCCGCGTAAAGCC
GTTGCCGGTGGGTGGGGGTCAGGTGACGCTATCGTTGTTGTCTTTGGGGG
CAACGGCGTTGAATTGTCTGGTTTATTCGATTTTGACTTTCTACAGCCCA
GCGGATATCGTGAATAAATTGGGGGAAGCGCCGTTGGCCAGGCTGGATGA
TGCTTTGCCGGTGGCGGCAGGGATCCTGGGGATTCAACTGGCACATGACC
TGGCGCATACCCTGGCGGCGAAAGCTAAAGATGTGAAGCTGGGCGTGCCC
ATATACATTCCCAGTTTGCAGGTGGGGACGTTCGGGAGTGTGTTGCGGTT
CGTGTCGTTTCCCAAGAGTCGGAAAGATATGTTTGATGTGGCGATGGCGG
GGCCCTTGACGGGTCTTGCCTTGTCTCTGGCTGCGTTTGCAGCGGGTATG
GCCATGACGAATGGGGCTCCGGTCGAGGTATCCGAGCAGTGGCCGATGCT
GCCGGTTGCACTGTTCAGGTCTAGTCTCATGCTCTGGCAGGTGGGGCAGG
CGTTGTTCAGCGCCGACGTGGTGAATTTGCCCTTGGTAAATCAAATACAT
GTGCACCCTTTGGCGATTATTGGGGCGTTGGGCTTACTCACCCAGGCGCT
GCAGGCGATGCCAATTGGAAGGCTGGATGGAGGTCGAGCCACCACCTCCG
TTTTTGGGCGCAAGGCGGCGACGTTCTTAAGCGCGAGTCTTGTGCTGTAT
CAGGTAGTGTCGGGGGTGGTTCTTGGGAACACCCTGCAGTTGTTTTGGGG
AACGGTGGTGATTATCTTCCAGAATGCGCAGGAGATGTACGCGCGGGATG
AAATTAGTCCCGTTGATGGTAACCGACGAAATTTGCTCTTGCTTCTGTGG
GTGGTGGCAGCCGTCGTGCTTTTGCCAGGTGTGCCTTGGCGGGATGCGGG
GGTGTTTGATGATTTTGGGGGCTTTATGACTTAG
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protein sequence of jgi.p|Nanoce1779_2|524625

>mRNA_1993-protein ID=mRNA_1993-protein|Name=jgi.p|Nanoce1779_2|524625|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MSEGERLQLQSQMLKLQAEKLRLEAEKEQIKMEREALLKKQKKQQDTDRL
VEKLRAAQSSPAGMASPEAAAAELKAVVKTYIRNIDADSLARIRDLSSEA
DTPEQALAYKNLADAVLKALNELDARQAKEIREELAFRFKDETPPTPSSN
APFDQFSDVEAAMRNASGGTSSIDQLTQEMMRNNSRGFSTIYAINLPQWL
PREFMRTLESFEPLLDEDVRTLRTEIFKMETFFVTDVDKTPLAVAYMGTL
RKPSEEVFKDVEKRLQALEGGLKDRVQLFLFENPRPQMQEMGGMMGGGGD
AENPEVMFMAVSTRVKPLPVGGGQVTLSLLSLGATALNCLVYSILTFYSP
ADIVNKLGEAPLARLDDALPVAAGILGIQLAHDLAHTLAAKAKDVKLGVP
IYIPSLQVGTFGSVLRFVSFPKSRKDMFDVAMAGPLTGLALSLAAFAAGM
AMTNGAPVEVSEQWPMLPVALFRSSLMLWQVGQALFSADVVNLPLVNQIH
VHPLAIIGALGLLTQALQAMPIGRLDGGRATTSVFGRKAATFLSASLVLY
QVVSGVVLGNTLQLFWGTVVIIFQNAQEMYARDEISPVDGNRRNLLLLLW
VVAAVVLLPGVPWRDAGVFDDFGGFMT*
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mRNA from alignment at scaffold_4:519295..521178-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1993 ID=mRNA_1993|Name=jgi.p|Nanoce1779_2|524625|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp|location=Sequence derived from alignment at scaffold_4:519295..521178- (Nannochloropsis oceanica)
ATGTCAGAAGGAGAGCGACTCCAACTGCAGTCTCAAATGCTCAAACTTCA
GGCTGAGAAGCTGCGTTTGGAAGCCGAGAAGGAGCAGATCAAGATGGAAC
GGGAAGCTCTCCTGAAGAAGCAGAAAAAGCAGCAAGACACGGACCGGCTT
GTCGAGAAACTCCGTGCCGCCCAGTCCTCCCCCGCCGGGATGGCCTCTCC
AGAAGCCGCCGCCGCGGAACTCAAGGCCGTGGTCAAGACGTACATCCGCA
ACATCGACGCTGATTCCCTCGCACGGATTCGTGATTTGAGCTCTGAAGCG
GACACGCCTGAGCAGGCCCTTGCGTACAAGAACCTGGCTGATGCTGTATT
GAAAGCATTGAATGAGTTGGATGCGCGTCAAGCCAAGGAGATTCGGGAAG
AGCTCGCGTTTCGCTTCAAGGACGAGACGCCCCCGACCCCGTCGTCCAAC
GCGCCTTTTGATCAGTTTTCGGATGTGGAAGCGGCGATGAGGAATGCCTC
CGGGGGTACTTCGTCCATCGATCAGCTAACTCAAGAAATGATGCGAAACA
ACTCTCGCGGGTTTTCCACCATTTACGCCATCAACCTCCCCCAATGGCTC
CCGCGGGAGTTCATGCGTACCCTCGAATCATTCGAGCCTCTTCTGGACGA
GGACGTGCGGACCTTGCGGACAGAGATTTTCAAGATGGAGACGTTTTTTG
TGACAGACGTCGATAAGACGCCTCTAGCCGTCGCTTACATGGGCACTCTC
CGGAAGCCTTCGGAGGAGGTTTTCAAAGACGTGGAGAAGAGACTGCAAGC
CTTGGAGGGGGGATTGAAGGATCGGGTGCAATTGTTTTTGTTCGAGAACC
CGCGTCCACAGATGCAGGAGATGGGGGGGATGATGGGAGGAGGGGGGGAT
GCGGAAAACCCCGAAGTGATGTTTATGGCGGTGTCGACCCGCGTAAAGCC
GTTGCCGGTGGGTGGGGGTCAGGTGACGCTATCGTTGTTGTCTTTGGGGG
CAACGGCGTTGAATTGTCTGGTTTATTCGATTTTGACTTTCTACAGCCCA
GCGGATATCGTGAATAAATTGGGGGAAGCGCCGTTGGCCAGGCTGGATGA
TGCTTTGCCGGTGGCGGCAGGGATCCTGGGGATTCAACTGGCACATGACC
TGGCGCATACCCTGGCGGCGAAAGCTAAAGATGTGAAGCTGGGCGTGCCC
ATATACATTCCCAGTTTGCAGGTGGGGACGTTCGGGAGTGTGTTGCGGTT
CGTGTCGTTTCCCAAGAGTCGGAAAGATATGTTTGATGTGGCGATGGCGG
GGCCCTTGACGGGTCTTGCCTTGTCTCTGGCTGCGTTTGCAGCGGGTATG
GCCATGACGAATGGGGCTCCGGTCGAGGTATCCGAGCAGTGGCCGATGCT
GCCGGTTGCACTGTTCAGGTCTAGTCTCATGCTCTGGCAGGTGGGGCAGG
CGTTGTTCAGCGCCGACGTGGTGAATTTGCCCTTGGTAAATCAAATACAT
GTGCACCCTTTGGCGATTATTGGGGCGTTGGGCTTACTCACCCAGGCGCT
GCAGGCGATGCCAATTGGAAGGCTGGATGGAGGTCGAGCCACCACCTCCG
TTTTTGGGCGCAAGGCGGCGACGTTCTTAAGCGCGAGTCTTGTGCTGTAT
CAGGTAGTGTCGGGGGTGGTTCTTGGGAACACCCTGCAGTTGTTTTGGGG
AACGGTGGTGATTATCTTCCAGAATGCGCAGGAGATGTACGCGCGGGATG
AAATTAGTCCCGTTGATGGTAACCGACGAAATTTGCTCTTGCTTCTGTGG
GTGGTGGCAGCCGTCGTGCTTTTGCCAGGTGTGCCTTGGCGGGATGCGGG
GGTGTTTGATGATTTTGGGGGCTTTATGACTTAG
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Coding sequence (CDS) from alignment at scaffold_4:519295..521178-

>mRNA_1993 ID=mRNA_1993|Name=jgi.p|Nanoce1779_2|524625|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_4:519295..521178- (Nannochloropsis oceanica)
ATGTCAGAAGGAGAGCGACTCCAACTGCAGTCTCAAATGCTCAAACTTCA
GGCTGAGAAGCTGCGTTTGGAAGCCGAGAAGGAGCAGATCAAGATGGAAC
GGGAAGCTCTCCTGAAGAAGCAGAAAAAGCAGCAAGACACGGACCGGCTT
GTCGAGAAACTCCGTGCCGCCCAGTCCTCCCCCGCCGGGATGGCCTCTCC
AGAAGCCGCCGCCGCGGAACTCAAGGCCGTGGTCAAGACGTACATCCGCA
ACATCGACGCTGATTCCCTCGCACGGATTCGTGATTTGAGCTCTGAAGCG
GACACGCCTGAGCAGGCCCTTGCGTACAAGAACCTGGCTGATGCTGTATT
GAAAGCATTGAATGAGTTGGATGCGCGTCAAGCCAAGGAGATTCGGGAAG
AGCTCGCGTTTCGCTTCAAGGACGAGACGCCCCCGACCCCGTCGTCCAAC
GCGCCTTTTGATCAGTTTTCGGATGTGGAAGCGGCGATGAGGAATGCCTC
CGGGGGTACTTCGTCCATCGATCAGCTAACTCAAGAAATGATGCGAAACA
ACTCTCGCGGGTTTTCCACCATTTACGCCATCAACCTCCCCCAATGGCTC
CCGCGGGAGTTCATGCGTACCCTCGAATCATTCGAGCCTCTTCTGGACGA
GGACGTGCGGACCTTGCGGACAGAGATTTTCAAGATGGAGACGTTTTTTG
TGACAGACGTCGATAAGACGCCTCTAGCCGTCGCTTACATGGGCACTCTC
CGGAAGCCTTCGGAGGAGGTTTTCAAAGACGTGGAGAAGAGACTGCAAGC
CTTGGAGGGGGGATTGAAGGATCGGGTGCAATTGTTTTTGTTCGAGAACC
CGCGTCCACAGATGCAGGAGATGGGGGGGATGATGGGAGGAGGGGGGGAT
GCGGAAAACCCCGAAGTGATGTTTATGGCGGTGTCGACCCGCGTAAAGCC
GTTGCCGGTGGGTGGGGGTCAGGTGACGCTATCGTTGTTGTCTTTGGGGG
CAACGGCGTTGAATTGTCTGGTTTATTCGATTTTGACTTTCTACAGCCCA
GCGGATATCGTGAATAAATTGGGGGAAGCGCCGTTGGCCAGGCTGGATGA
TGCTTTGCCGGTGGCGGCAGGGATCCTGGGGATTCAACTGGCACATGACC
TGGCGCATACCCTGGCGGCGAAAGCTAAAGATGTGAAGCTGGGCGTGCCC
ATATACATTCCCAGTTTGCAGGTGGGGACGTTCGGGAGTGTGTTGCGGTT
CGTGTCGTTTCCCAAGAGTCGGAAAGATATGTTTGATGTGGCGATGGCGG
GGCCCTTGACGGGTCTTGCCTTGTCTCTGGCTGCGTTTGCAGCGGGTATG
GCCATGACGAATGGGGCTCCGGTCGAGGTATCCGAGCAGTGGCCGATGCT
GCCGGTTGCACTGTTCAGGTCTAGTCTCATGCTCTGGCAGGTGGGGCAGG
CGTTGTTCAGCGCCGACGTGGTGAATTTGCCCTTGGTAAATCAAATACAT
GTGCACCCTTTGGCGATTATTGGGGCGTTGGGCTTACTCACCCAGGCGCT
GCAGGCGATGCCAATTGGAAGGCTGGATGGAGGTCGAGCCACCACCTCCG
TTTTTGGGCGCAAGGCGGCGACGTTCTTAAGCGCGAGTCTTGTGCTGTAT
CAGGTAGTGTCGGGGGTGGTTCTTGGGAACACCCTGCAGTTGTTTTGGGG
AACGGTGGTGATTATCTTCCAGAATGCGCAGGAGATGTACGCGCGGGATG
AAATTAGTCCCGTTGATGGTAACCGACGAAATTTGCTCTTGCTTCTGTGG
GTGGTGGCAGCCGTCGTGCTTTTGCCAGGTGTGCCTTGGCGGGATGCGGG
GGTGTTTGATGATTTTGGGGGCTTTATGACTTAG
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Synonyms
Publications