jgi.p|Nanoce1779_2|622611, mRNA_1991 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622611
Unique Name	mRNA_1991
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1299
Alignment location	scaffold_4:514301..515939 +

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Properties


Property Name	Value
TranscriptId	622697
Track	FilteredModels2
ProteinId	622611

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:514301..515939 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622611	gene_1991	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622611	mRNA_1991-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1991	CDS_1991	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:514301..515939+
coding sequence from alignment at scaffold_4:514301..515939+

mRNA sequence

>mRNA_1991 ID=mRNA_1991|Name=jgi.p|Nanoce1779_2|622611|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
ATGTCGTCCATGTCGCTGGCGCAAGACCAGCGGAACGAACTGCTTTTCGT
GGGGTTCAATCAGGACTATGGATGCTTTGCTTGCGGGACTGACAATGGCT
TTCGCATCTACAACGTCGAACCATACCGCGAGACCTTCCGCCGTATTTTT
CCCAATGGTGGAATCGGCATCGTCGAAATGCTTTTCCGGACCAACCTTCT
TGCCCTCGTTGGCGGTGGCCGCAATCCCCGCTTTCCCCCCAACAAAGTCA
TGATCTGGGATGATCATCAGAACAGATGCATCGGCGAACTGAGCTTCCGC
AGTGAAGTCAAAGCAGTCAAGCTCCGTCGGGACCGAGTTGTCGTCGTGTT
GTCAACCAAAATTTATGTCTACCGCTTTTCGGACCTGCATTTGCAAGATC
AGATGAACACCTTGCCCAACCCCCGAGGCCTCGTGGCCCTCTGCCCGGAC
AACAACAACACAGTCCTCGCCTGCCTTGGGATTAATAAAGGATCAGTCCG
TGTTGAGCTGTATGACAGCAGGAAGAGCACGCTAATCCCGGCGCATGAAT
CGGAGCTGTCGCAGATCGCCTTGAACTTAGATGGGACCCGCTTGGCGACT
GCCTCGGATAAGGGGACATTGATTCGGATTTTCGACACGTACTCCGGGGA
GTTATTGCAAGAATTGAGAAGGGGCATGGATAGAGCTGAGATTTATTCCC
TGGCGTTCAATGCCTCGTCGACATTTGTGGCGTGTTCGTCGTGTAAAGGC
ACGGTACATATTTTTGCGTTAGGCGCCGATGGAGGGATGAATAGTAGTAG
TGGTTCTGGAGGAGGGGGAGGAGGAGGAGGGAGGCAAGGAGGAGTGGTCC
ATAATGTCGGGGTTGGGGGAGGAGGGGTGGGAGGGGATGAGGTGAAGAAC
ACAACATCAGGGCTTTCTTTCATGCGCAATTTGTTGCCGCAGATGACTCC
AAGGTATTTTTCCTCGGAATGGAGTTTCGCTCAGGTGCGAGGGTTGGAAG
CCAAGACAGTCGTGGCGTTCGGTGCTCGAGAGCAGACGTTGATTTGTGTG
GGGGCAGATGGCTCGTACATGGTGTCGAATTTTGCTAAGGGAGGGGAGGC
AGAGCGGGTTTCGTACAAGAAACTCGTCAAATCTGCAGAGGAGGAAGATG
AGGATCACTTTGCGACTACTCCTTCGTCTTCGTCAGGTGGGGGATTGCCT
CCTCCTCCATCGTCAACGTCGTTACCGCCGCCGAGGGGGAATATGGGTAC
GGCTAATGTGAATGGCAGCGATGCAGGGCCGTTGCAAGCAATATCATGA

protein sequence of jgi.p|Nanoce1779_2|622611

>mRNA_1991-protein ID=mRNA_1991-protein|Name=jgi.p|Nanoce1779_2|622611|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MSSMSLAQDQRNELLFVGFNQDYGCFACGTDNGFRIYNVEPYRETFRRIF
PNGGIGIVEMLFRTNLLALVGGGRNPRFPPNKVMIWDDHQNRCIGELSFR
SEVKAVKLRRDRVVVVLSTKIYVYRFSDLHLQDQMNTLPNPRGLVALCPD
NNNTVLACLGINKGSVRVELYDSRKSTLIPAHESELSQIALNLDGTRLAT
ASDKGTLIRIFDTYSGELLQELRRGMDRAEIYSLAFNASSTFVACSSCKG
TVHIFALGADGGMNSSSGSGGGGGGGGRQGGVVHNVGVGGGGVGGDEVKN
TTSGLSFMRNLLPQMTPRYFSSEWSFAQVRGLEAKTVVAFGAREQTLICV
GADGSYMVSNFAKGGEAERVSYKKLVKSAEEEDEDHFATTPSSSSGGGLP
PPPSSTSLPPPRGNMGTANVNGSDAGPLQAIS*

mRNA from alignment at scaffold_4:514301..515939+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1991 ID=mRNA_1991|Name=jgi.p|Nanoce1779_2|622611|organism=Nannochloropsis oceanica|type=mRNA|length=1639bp|location=Sequence derived from alignment at scaffold_4:514301..515939+ (Nannochloropsis oceanica)
ATGTCGTCCATGTCGCTGGCGCAAGACCAGCGGAACGAACTGCTTTTCGT
GGGGTTCAATCAGGACTATGGATGCTTTGCTTGCGGGACTGACAATGGCT
TTCGGTACGTGTCAAACGCAATGGAAAGAGAAAGAGAAATGTTATGCATT
TGCGGACAATTGGGTTTGCGGCTCGCTCGCTTTTGATAGTATGGAACATG
AGATTACATCCCATTTCCTCTGCACTTCTTCCGTCCTCTTACTGTTTGCC
TCGCCGGCACATGCAGCTTCTTTGCAGCGTCCGAAAATTGTGTCGTTACG
CTGTCCAGTAGCGTCATTCATCGGCCGCATGCCCGGCCATCACGCCACCA
GTTCCTCCTCTACACCCAAAGTCCACTCACATACTCTTCCACCCGACCAA
CCCCTCCCATCACTTTCACTTTCACGCAGCATCTACAACGTCGAACCATA
CCGCGAGACCTTCCGCCGTATTTTTCCCAATGGTGGAATCGGCATCGTCG
AAATGCTTTTCCGGACCAACCTTCTTGCCCTCGTTGGCGGTGGCCGCAAT
CCCCGCTTTCCCCCCAACAAAGTCATGATCTGGGATGATCATCAGAACAG
ATGCATCGGCGAACTGAGCTTCCGCAGTGAAGTCAAAGCAGTCAAGCTCC
GTCGGGACCGAGTTGTCGTCGTGTTGTCAACCAAAATTTATGTCTACCGC
TTTTCGGACCTGCATTTGCAAGATCAGATGAACACCTTGCCCAACCCCCG
AGGCCTCGTGGCCCTCTGCCCGGACAACAACAACACAGTCCTCGCCTGCC
TTGGGATTAATAAAGGATCAGTCCGTGTTGAGCTGTATGACAGCAGGAAG
AGCACGCTAATCCCGGCGCATGAATCGGAGCTGTCGCAGATCGCCTTGAA
CTTAGATGGGACCCGCTTGGCGACTGCCTCGGATAAGGGGACATTGATTC
GGATTTTCGACACGTACTCCGGGGAGTTATTGCAAGAATTGAGAAGGGGC
ATGGATAGAGCTGAGATTTATTCCCTGGCGTTCAATGCCTCGTCGACATT
TGTGGCGTGTTCGTCGTGTAAAGGCACGGTACATATTTTTGCGTTAGGCG
CCGATGGAGGGATGAATAGTAGTAGTGGTTCTGGAGGAGGGGGAGGAGGA
GGAGGGAGGCAAGGAGGAGTGGTCCGTTCGGGGTCTTTAGATAATGTCGG
GGTTGGGGGAGGAGGGGTGGGAGGGGATGAGGTGAAGAACACAACATCAG
GGCTTTCTTTCATGCGCAATTTGTTGCCGCAGATGACTCCAAGGTATTTT
TCCTCGGAATGGAGTTTCGCTCAGGTGCGAGGGTTGGAAGCCAAGACAGT
CGTGGCGTTCGGTGCTCGAGAGCAGACGTTGATTTGTGTGGGGGCAGATG
GCTCGTACATGGTGTCGAATTTTGCTAAGGGAGGGGAGGCAGAGCGGGTT
TCGTACAAGAAACTCGTCAAATCTGCAGAGGAGGAAGATGAGGATCACTT
TGCGACTACTCCTTCGTCTTCGTCAGGTGGGGGATTGCCTCCTCCTCCAT
CGTCAACGTCGTTACCGCCGCCGAGGGGGAATATGGGTACGGCTAATGTG
AATGGCAGCGATGCAGGGCCGTTGCAAGCAATATCATGA

Coding sequence (CDS) from alignment at scaffold_4:514301..515939+

>mRNA_1991 ID=mRNA_1991|Name=jgi.p|Nanoce1779_2|622611|organism=Nannochloropsis oceanica|type=CDS|length=3897bp|location=Sequence derived from alignment at scaffold_4:514301..515939+ (Nannochloropsis oceanica)
ATGTCGTCCATGTCGCTGGCGCAAGACCAGCGGAACGAACTGCTTTTCGT
GGGGTTCAATCAGGACTATGGATGCTTTGCTTGCGGGACTGACAATGGCT
TTCGCATCTACAACGTCGAACCATACCGCGAGACCTTCCGCCGTATTTTT
CCCAATGGTGGAATCGGCATCGTCGAAATGCTTTTCCGGACCAACCTTCT
TGCCCTCGTTGGCGGTGGCCGCAATCCCCGCTTTCCCCCCAACAAAGTCA
TGATCTGGGATGATCATCAGAACAGATGCATCGGCGAACTGAGCTTCCGC
AGTGAAGTCAAAGCAGTCAAGCTCCGTCGGGACCGAGTTGTCGTCGTGTT
GTCAACCAAAATTTATGTCTACCGCTTTTCGGACCTGCATTTGCAAGATC
AGATGAACACCTTGCCCAACCCCCGAGGCCTCGTGGCCCTCTGCCCGGAC
AACAACAACACAGTCCTCGCCTGCCTTGGGATTAATAAAGGATCAGTCCG
TGTTGAGCTGTATGACAGCAGGAAGAGCACGCTAATCCCGGCGCATGAAT
CGGAGCTGTCGCAGATCGCCTTGAACTTAGATGGGACCCGCTTGGCGACT
GCCTCGGATAAGGGGACATTGATTCGGATTTTCGACACGTACTCCGGGGA
GTTATTGCAAGAATTGAGAAGGGGCATGGATAGAGCTGAGATTTATTCCC
TGGCGTTCAATGCCTCGTCGACATTTGTGGCGTGTTCGTCGTGTAAAGGC
ACGGTACATATTTTTGCGTTAGGCGCCGATGGAGGGATGAATAGTAGTAG
TGGTTCTGGAGGAGGGGGAGGAGGAGGAGGGAGGCAAGGAGGAGTGGTCC
ATAATGTCGGGGTTGGGGGAGGAGGGGTGGGAGGGGATGAGGTGAAGAAC
ACAACATCAGGGCTTTCTTTCATGCGCAATTTGTTGCCGCAGATGACTCC
AAGGTATTTTTCCTCGGAATGGAGTTTCGCTCAGGTGCGAGGGTTGGAAG
CCAAGACAGTCGTGGCGTTCGGTGCTCGAGAGCAGACGTTGATTTGTGTG
GGGGCAGATGGCTCGTACATGGTGTCGAATTTTGCTAAGGGAGGGGAGGC
AGAGCGGGTTTCGTACAAGAAACTCGTCAAATCTGCAGAGGAGGAAGATG
AGGATCACTTTGCGACTACTCCTTCGTCTTCGTCAGGTGGGGGATTGCCT
CCTCCTCCATCGTCAACGTCGTTACCGCCGCCGAGGGGGAATATGGGTAC
GGCTAATGTGAATGGCAGCGATGCAGGGCCGTTGCAAGCAATATCATGAA
TGTCGTCCATGTCGCTGGCGCAAGACCAGCGGAACGAACTGCTTTTCGTG
GGGTTCAATCAGGACTATGGATGCTTTGCTTGCGGGACTGACAATGGCTT
TCGCATCTACAACGTCGAACCATACCGCGAGACCTTCCGCCGTATTTTTC
CCAATGGTGGAATCGGCATCGTCGAAATGCTTTTCCGGACCAACCTTCTT
GCCCTCGTTGGCGGTGGCCGCAATCCCCGCTTTCCCCCCAACAAAGTCAT
GATCTGGGATGATCATCAGAACAGATGCATCGGCGAACTGAGCTTCCGCA
GTGAAGTCAAAGCAGTCAAGCTCCGTCGGGACCGAGTTGTCGTCGTGTTG
TCAACCAAAATTTATGTCTACCGCTTTTCGGACCTGCATTTGCAAGATCA
GATGAACACCTTGCCCAACCCCCGAGGCCTCGTGGCCCTCTGCCCGGACA
ACAACAACACAGTCCTCGCCTGCCTTGGGATTAATAAAGGATCAGTCCGT
GTTGAGCTGTATGACAGCAGGAAGAGCACGCTAATCCCGGCGCATGAATC
GGAGCTGTCGCAGATCGCCTTGAACTTAGATGGGACCCGCTTGGCGACTG
CCTCGGATAAGGGGACATTGATTCGGATTTTCGACACGTACTCCGGGGAG
TTATTGCAAGAATTGAGAAGGGGCATGGATAGAGCTGAGATTTATTCCCT
GGCGTTCAATGCCTCGTCGACATTTGTGGCGTGTTCGTCGTGTAAAGGCA
CGGTACATATTTTTGCGTTAGGCGCCGATGGAGGGATGAATAGTAGTAGT
GGTTCTGGAGGAGGGGGAGGAGGAGGAGGGAGGCAAGGAGGAGTGGTCCA
TAATGTCGGGGTTGGGGGAGGAGGGGTGGGAGGGGATGAGGTGAAGAACA
CAACATCAGGGCTTTCTTTCATGCGCAATTTGTTGCCGCAGATGACTCCA
AGGTATTTTTCCTCGGAATGGAGTTTCGCTCAGGTGCGAGGGTTGGAAGC
CAAGACAGTCGTGGCGTTCGGTGCTCGAGAGCAGACGTTGATTTGTGTGG
GGGCAGATGGCTCGTACATGGTGTCGAATTTTGCTAAGGGAGGGGAGGCA
GAGCGGGTTTCGTACAAGAAACTCGTCAAATCTGCAGAGGAGGAAGATGA
GGATCACTTTGCGACTACTCCTTCGTCTTCGTCAGGTGGGGGATTGCCTC
CTCCTCCATCGTCAACGTCGTTACCGCCGCCGAGGGGGAATATGGGTACG
GCTAATGTGAATGGCAGCGATGCAGGGCCGTTGCAAGCAATATCATGAAT
GTCGTCCATGTCGCTGGCGCAAGACCAGCGGAACGAACTGCTTTTCGTGG
GGTTCAATCAGGACTATGGATGCTTTGCTTGCGGGACTGACAATGGCTTT
CGCATCTACAACGTCGAACCATACCGCGAGACCTTCCGCCGTATTTTTCC
CAATGGTGGAATCGGCATCGTCGAAATGCTTTTCCGGACCAACCTTCTTG
CCCTCGTTGGCGGTGGCCGCAATCCCCGCTTTCCCCCCAACAAAGTCATG
ATCTGGGATGATCATCAGAACAGATGCATCGGCGAACTGAGCTTCCGCAG
TGAAGTCAAAGCAGTCAAGCTCCGTCGGGACCGAGTTGTCGTCGTGTTGT
CAACCAAAATTTATGTCTACCGCTTTTCGGACCTGCATTTGCAAGATCAG
ATGAACACCTTGCCCAACCCCCGAGGCCTCGTGGCCCTCTGCCCGGACAA
CAACAACACAGTCCTCGCCTGCCTTGGGATTAATAAAGGATCAGTCCGTG
TTGAGCTGTATGACAGCAGGAAGAGCACGCTAATCCCGGCGCATGAATCG
GAGCTGTCGCAGATCGCCTTGAACTTAGATGGGACCCGCTTGGCGACTGC
CTCGGATAAGGGGACATTGATTCGGATTTTCGACACGTACTCCGGGGAGT
TATTGCAAGAATTGAGAAGGGGCATGGATAGAGCTGAGATTTATTCCCTG
GCGTTCAATGCCTCGTCGACATTTGTGGCGTGTTCGTCGTGTAAAGGCAC
GGTACATATTTTTGCGTTAGGCGCCGATGGAGGGATGAATAGTAGTAGTG
GTTCTGGAGGAGGGGGAGGAGGAGGAGGGAGGCAAGGAGGAGTGGTCCAT
AATGTCGGGGTTGGGGGAGGAGGGGTGGGAGGGGATGAGGTGAAGAACAC
AACATCAGGGCTTTCTTTCATGCGCAATTTGTTGCCGCAGATGACTCCAA
GGTATTTTTCCTCGGAATGGAGTTTCGCTCAGGTGCGAGGGTTGGAAGCC
AAGACAGTCGTGGCGTTCGGTGCTCGAGAGCAGACGTTGATTTGTGTGGG
GGCAGATGGCTCGTACATGGTGTCGAATTTTGCTAAGGGAGGGGAGGCAG
AGCGGGTTTCGTACAAGAAACTCGTCAAATCTGCAGAGGAGGAAGATGAG
GATCACTTTGCGACTACTCCTTCGTCTTCGTCAGGTGGGGGATTGCCTCC
TCCTCCATCGTCAACGTCGTTACCGCCGCCGAGGGGGAATATGGGTACGG
CTAATGTGAATGGCAGCGATGCAGGGCCGTTGCAAGCAATATCATGA

Synonyms

Publications