jgi.p|Nanoce1779_2|578672, mRNA_1990 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578672
Unique NamemRNA_1990
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length629
Alignment locationscaffold_4:513207..513835 -

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Properties
Property NameValue
TranscriptId578758
TrackFilteredModels2
ProteinId578672
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:513207..513835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578672gene_1990Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578672mRNA_1990-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1990CDS_1990Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1990 ID=mRNA_1990|Name=jgi.p|Nanoce1779_2|578672|organism=Nannochloropsis oceanica|type=mRNA|length=629bp
CAGGTCAAGCGCCCCCTGCACTGGCCGTGCTTTGAGCCCTACCCACTCTT
CGCATACCCGATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCC
ACCTGCGCAAGCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGC
AAGTACTACGAGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGC
CCCCCCGACTCCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCT
TGCCCAATGGATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACC
TCCTTGCCTCGCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGG
CCGATGGCTTCCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGA
TTACGATGGTGCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAA
ATGTCCAAGGTGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCG
GTTGGAGGTCAAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGG
GCTTAGGGTTCTAGATTTGCAATAAACGGAGAGAGTCCGGTGCGAGAAAA
AGAGAAATGGTCTGGAAGAGAGGAGTCGA
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protein sequence of jgi.p|Nanoce1779_2|578672

>mRNA_1990-protein ID=mRNA_1990-protein|Name=jgi.p|Nanoce1779_2|578672|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MERVSPLLGRFGGHLRKHSNSAKKRIFGSRKYYEEVIKPAREEAANAPPT
PLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWL
PVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEV
KGRYTTQLRGWLAGLGF*
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mRNA from alignment at scaffold_4:513207..513835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1990 ID=mRNA_1990|Name=jgi.p|Nanoce1779_2|578672|organism=Nannochloropsis oceanica|type=mRNA|length=629bp|location=Sequence derived from alignment at scaffold_4:513207..513835- (Nannochloropsis oceanica)
CAGGTCAAGCGCCCCCTGCACTGGCCGTGCTTTGAGCCCTACCCACTCTT
CGCATACCCGATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCC
ACCTGCGCAAGCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGC
AAGTACTACGAGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGC
CCCCCCGACTCCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCT
TGCCCAATGGATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACC
TCCTTGCCTCGCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGG
CCGATGGCTTCCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGA
TTACGATGGTGCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAA
ATGTCCAAGGTGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCG
GTTGGAGGTCAAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGG
GCTTAGGGTTCTAGATTTGCAATAAACGGAGAGAGTCCGGTGCGAGAAAA
AGAGAAATGGTCTGGAAGAGAGGAGTCGA
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Coding sequence (CDS) from alignment at scaffold_4:513207..513835-

>mRNA_1990 ID=mRNA_1990|Name=jgi.p|Nanoce1779_2|578672|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_4:513207..513835- (Nannochloropsis oceanica)
ATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCCACCTGCGCAA
GCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGCAAGTACTACG
AGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGCCCCCCCGACT
CCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCTTGCCCAATGG
ATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACCTCCTTGCCTC
GCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGGCCGATGGCTT
CCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGATTACGATGGT
GCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAAATGTCCAAGG
TGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCGGTTGGAGGTC
AAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGGGCTTAGGGTT
CTAG
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Synonyms
Publications