jgi.p|Nanoce1779_2|576520, mRNA_199 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576520
Unique Name	mRNA_199
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1523
Alignment location	scaffold_3:495437..497250 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576606
Track	FilteredModels2
ProteinId	576520

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:495437..497250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576520	gene_199	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576520	mRNA_199-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_199	CDS_199	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:495437..497250+
coding sequence from alignment at scaffold_3:495437..497250+

mRNA sequence

>mRNA_199 ID=mRNA_199|Name=jgi.p|Nanoce1779_2|576520|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ACAGGGCGCCAAACACCCAGGACGAAGGAAGCTAAAGGCTCTATACCAAA
CCAGTATCCACGCATCCCAGATATCCCTCCCAGTCGTAGTTCTGTACAAC
ACAAGTACCTGACCACCATGCCTGTTCATCAACAACGGCGGCCTGCTCTC
GTCTTGTCAGGGATGGCAACATTGCTCTTAGCGTTAAGCACAGAGGCAGG
CAATCCCAAGAACCGACGCCGCATGCAATTTGATAGCAACGCCGATATCC
TGGAGGACGTGGAGGATTGGAAGGCTATTGTGGACCCCTCCACCTGCCCT
TTGAAGCAATGGTCGGTCGCCTTGAAGCTGACTGCCGTGACTCTGGCCGA
TGGCCTCCCTTGCTTTGATACCGAAGGTAAAGTTAGCCCATATGTGCAAT
TCAAGATGAGCGGAAAGACTATCCAGAGCTGGACAGAGGAGAATCAGCAG
TTCCCTGTCTTTTTGGAAAATTTTCAGTTGGGGTGTCACGATATTTCTGA
GCCGCTCGAAGTCTCGGTTGTGAACTCTGCGACGGGACGGACGTGCATGT
CTACAATGGTGCAGCATTGGTCGTATGGCCGGCAGGGCGTGTTCACGGAG
ACCCAACCGGCGTTGAGTGACGAGGCGCGTAGTGGGGGTTTTGGATTGAT
AAAGGACACACAGCAGAGCTACTCGTACGTGCTGAGGGATGGCAGGAGCT
CGATTGACTTGACCATCAACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCG
AAATGGAACACCCATACGGCAGGGGACACATTTGGGATCGTCTTCGGCAT
GCTATTATTCACAGGTTGCATCGGATACTTTGTCTGGAAGATCCGCAACT
CCCATTCAGGGCCCGCTCCACCTGTAAATGATGCTGCTGCCCTTCATGGT
GCTGCTCCTACTGCGCCAGCTGCTGGGATGAGCCAGAAGGCAGGTGAATC
GGCTGCTAATTTGGCCGCAGCATAGAACTTAGTCAATTGTGAGTGGTAAA
TGAGAAGAAAAGAAAGGATGCGAGGAGGGACACCAGTGGCGTGGAGTATC
TCCATTCATAGGTATGAAAAAAGAAAAAATCAATAAGTAAAGAGATTACG
GAGGAGAGACAACAAAATAGAAGCTGGAGCTGGAGTGATAAATGCGTGTA
TGACTAGCCGCGAATATCTTGTGTACATGAGGTAGGAAGGAGGAGGGCGG
GAAGGAGGAGGAAGAGGAGACAGAAAACACGAACGAAAGCAAACAATCAA
AAAGGGAATGGAAAATCGTAGAAAATCTCGGAAGAAAAAGGAAGGGTAGC
AAATGTGGGCATGTGTATGTGTTCAATACGTCTGCGAGTGATTGAGGGGC
CGACATTAGTCCGAATTGTTGGTAATTAGAAATCAAATGAAGAAGAGCGC
GCGGAGAGACGTATGAATATTCAACCCGTGTTGAGGGAAAGGAGAAGAAG
AAGATGAAAGGAAAGATGTAAGGAAGTGGAAGTGTGTTGAAACGTGCAAA
GAAAAAGAGTCAACAAAAGATGT

protein sequence of jgi.p|Nanoce1779_2|576520

>mRNA_199-protein ID=mRNA_199-protein|Name=jgi.p|Nanoce1779_2|576520|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MPVHQQRRPALVLSGMATLLLALSTEAGNPKNRRRMQFDSNADILEDVED
WKAIVDPSTCPLKQWSVALKLTAVTLADGLPCFDTEGKVSPYVQFKMSGK
TIQSWTEENQQFPVFLENFQLGCHDISEPLEVSVVNSATGRTCMSTMVQH
WSYGRQGVFTETQPALSDEARSGGFGLIKDTQQSYSYVLRDGRSSIDLTI
NAFPGPQEVASKWNTHTAGDTFGIVFGMLLFTGCIGYFVWKIRNSHSGPA
PPVNDAAALHGAAPTAPAAGMSQKAGESAANLAAA*

mRNA from alignment at scaffold_3:495437..497250+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_199 ID=mRNA_199|Name=jgi.p|Nanoce1779_2|576520|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_3:495437..497250+ (Nannochloropsis oceanica)
ACAGGGCGCCAAACACCCAGGACGAAGGAAGCTAAAGGCTCTATACCAAA
CCAGTATCCACGCATCCCAGATATCCCTCCCAGTCGTAGTTCTGTACAAC
ACAAGTACCTGACCACCATGCCTGTTCATCAACAACGGCGGCCTGCTCTC
GTCTTGTCAGGGATGGCAACATTGCTCTTAGCGTTAAGCACAGAGGCAGG
CAATCCCAAGGTGAGTCCATGTAATTGCATCGACGTCTTAACCACACTCC
TTGAAGTCTGACGCGCTTATGTCTTGATTGCCATATGTCTCTTGCCTTGG
TAAGGGTTACCATTACTATTCTGTCAATTCCCATGTCCTTCCCTCCCTCC
CTTGTTGATCGAAATTTTCACAACGTTCTGCCATATTTTCCACCTCTCTA
TGTATCTACTGGTCCCATATATGCTGTTATCTCTTGACGTGTATTGCTTT
TCTCACTCATTTTTGTCCTCTGCTCCGCTGCCAAAATATTCCTTCCCTTA
GAACCGACGCCGCATGCAATTTGATAGCAACGCCGATATCCTGGAGGACG
TGGAGGATTGGAAGGCTATTGTGGACCCCTCCACCTGCCCTTTGAAGCAA
TGGTCGGTCGCCTTGAAGCTGACTGCCGTGACTCTGGCCGATGGCCTCCC
TTGCTTTGATACCGAAGGTAAAGTTAGCCCATATGTGCAATTCAAGATGA
GCGGAAAGACTATCCAGAGCTGGACAGAGGAGAATCAGCAGTTCCCTGTC
TTTTTGGAAAATTTTCAGTTGGGGTGTCACGATATTTCTGAGCCGCTCGA
AGTCTCGGTTGTGAACTCTGCGACGGGACGGACGTGCATGTCTACAATGG
TGCAGCATTGGTCGTATGGCCGGCAGGGCGTGTTCACGGAGACCCAACCG
GCGTTGAGTGACGAGGCGCGTAGTGGGGGTTTTGGATTGATAAAGGACAC
ACAGCAGAGCTACTCGTACGTGCTGAGGGATGGCAGGAGCTCGATTGACT
TGACCATCAACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCGAAATGGAAC
ACCCATACGGCAGGGGACACATTTGGGATCGTCTTCGGCATGCTATTATT
CACAGGTTGCATCGGATACTTTGTCTGGAAGATCCGCAACTCCCATTCAG
GGCCCGCTCCACCTGTAAATGATGCTGCTGCCCTTCATGGTGCTGCTCCT
ACTGCGCCAGCTGCTGGGATGAGCCAGAAGGCAGGTGAATCGGCTGCTAA
TTTGGCCGCAGCATAGAACTTAGTCAATTGTGAGTGGTAAATGAGAAGAA
AAGAAAGGATGCGAGGAGGGACACCAGTGGCGTGGAGTATCTCCATTCAT
AGGTATGAAAAAAGAAAAAATCAATAAGTAAAGAGATTACGGAGGAGAGA
CAACAAAATAGAAGCTGGAGCTGGAGTGATAAATGCGTGTATGACTAGCC
GCGAATATCTTGTGTACATGAGGTAGGAAGGAGGAGGGCGGGAAGGAGGA
GGAAGAGGAGACAGAAAACACGAACGAAAGCAAACAATCAAAAAGGGAAT
GGAAAATCGTAGAAAATCTCGGAAGAAAAAGGAAGGGTAGCAAATGTGGG
CATGTGTATGTGTTCAATACGTCTGCGAGTGATTGAGGGGCCGACATTAG
TCCGAATTGTTGGTAATTAGAAATCAAATGAAGAAGAGCGCGCGGAGAGA
CGTATGAATATTCAACCCGTGTTGAGGGAAAGGAGAAGAAGAAGATGAAA
GGAAAGATGTAAGGAAGTGGAAGTGTGTTGAAACGTGCAAAGAAAAAGAG
TCAACAAAAGATGT

Coding sequence (CDS) from alignment at scaffold_3:495437..497250+

>mRNA_199 ID=mRNA_199|Name=jgi.p|Nanoce1779_2|576520|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_3:495437..497250+ (Nannochloropsis oceanica)
ATGCCTGTTCATCAACAACGGCGGCCTGCTCTCGTCTTGTCAGGGATGGC
AACATTGCTCTTAGCGTTAAGCACAGAGGCAGGCAATCCCAAGAACCGAC
GCCGCATGCAATTTGATAGCAACGCCGATATCCTGGAGGACGTGGAGGAT
TGGAAGGCTATTGTGGACCCCTCCACCTGCCCTTTGAAGCAATGGTCGGT
CGCCTTGAAGCTGACTGCCGTGACTCTGGCCGATGGCCTCCCTTGCTTTG
ATACCGAAGGTAAAGTTAGCCCATATGTGCAATTCAAGATGAGCGGAAAG
ACTATCCAGAGCTGGACAGAGGAGAATCAGCAGTTCCCTGTCTTTTTGGA
AAATTTTCAGTTGGGGTGTCACGATATTTCTGAGCCGCTCGAAGTCTCGG
TTGTGAACTCTGCGACGGGACGGACGTGCATGTCTACAATGGTGCAGCAT
TGGTCGTATGGCCGGCAGGGCGTGTTCACGGAGACCCAACCGGCGTTGAG
TGACGAGGCGCGTAGTGGGGGTTTTGGATTGATAAAGGACACACAGCAGA
GCTACTCGTACGTGCTGAGGGATGGCAGGAGCTCGATTGACTTGACCATC
AACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCGAAATGGAACACCCATAC
GGCAGGGGACACATTTGGGATCGTCTTCGGCATGCTATTATTCACAGGTT
GCATCGGATACTTTGTCTGGAAGATCCGCAACTCCCATTCAGGGCCCGCT
CCACCTGTAAATGATGCTGCTGCCCTTCATGGTGCTGCTCCTACTGCGCC
AGCTGCTGGGATGAGCCAGAAGGCAGGTGAATCGGCTGCTAATTTGGCCG
CAGCATAGATGCCTGTTCATCAACAACGGCGGCCTGCTCTCGTCTTGTCA
GGGATGGCAACATTGCTCTTAGCGTTAAGCACAGAGGCAGGCAATCCCAA
GAACCGACGCCGCATGCAATTTGATAGCAACGCCGATATCCTGGAGGACG
TGGAGGATTGGAAGGCTATTGTGGACCCCTCCACCTGCCCTTTGAAGCAA
TGGTCGGTCGCCTTGAAGCTGACTGCCGTGACTCTGGCCGATGGCCTCCC
TTGCTTTGATACCGAAGGTAAAGTTAGCCCATATGTGCAATTCAAGATGA
GCGGAAAGACTATCCAGAGCTGGACAGAGGAGAATCAGCAGTTCCCTGTC
TTTTTGGAAAATTTTCAGTTGGGGTGTCACGATATTTCTGAGCCGCTCGA
AGTCTCGGTTGTGAACTCTGCGACGGGACGGACGTGCATGTCTACAATGG
TGCAGCATTGGTCGTATGGCCGGCAGGGCGTGTTCACGGAGACCCAACCG
GCGTTGAGTGACGAGGCGCGTAGTGGGGGTTTTGGATTGATAAAGGACAC
ACAGCAGAGCTACTCGTACGTGCTGAGGGATGGCAGGAGCTCGATTGACT
TGACCATCAACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCGAAATGGAAC
ACCCATACGGCAGGGGACACATTTGGGATCGTCTTCGGCATGCTATTATT
CACAGGTTGCATCGGATACTTTGTCTGGAAGATCCGCAACTCCCATTCAG
GGCCCGCTCCACCTGTAAATGATGCTGCTGCCCTTCATGGTGCTGCTCCT
ACTGCGCCAGCTGCTGGGATGAGCCAGAAGGCAGGTGAATCGGCTGCTAA
TTTGGCCGCAGCATAG

Synonyms

Publications