jgi.p|Nanoce1779_2|578670, mRNA_1988 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578670
Unique NamemRNA_1988
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2219
Alignment locationscaffold_4:509484..511702 -

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Properties
Property NameValue
TranscriptId578756
TrackFilteredModels2
ProteinId578670
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:509484..511702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578670gene_1988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578670mRNA_1988-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1988CDS_1988Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1988 ID=mRNA_1988|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp
GCCCCGTAGCCTTTCGTCCTCATCCTCTTTTTCGTGCTATCGTTCGCTTT
TCCTCCCCCCTTCTCCTCCGGGGGCAGCATCATGGCTAGCTCCACAGGAA
TCGCTTCGTCATCCTGACTCTCATCTTGAGTATCAAGTCTCCTGCCCCTT
TTCTTAATCGCCAACGCCTCCGATGCTCGCGCGGTCGCGTCAGCCGCTGC
AGCTGCTGCTGCTTTATTGGCAGCTGCGCGGGAGCCACGGATAGCAGCTG
CGGCACCAGCGCTGGTCAGAGCTTCAGGGGAGGGCGTGAGAAGATCGAAG
GGAACGACACGGACGAGGTAGTGAGAGGTGATCATTTTGTGGATTAGTGC
TTGGAGCTTGGCACCGGTCATTAGGTAAGCTTTTCTGTTGCTGCTACTGC
TGCTGTTGCTGCTCATGTTGTTGCCGCTGTTGGGCTTATTGACGTTGTCC
TCGCCCTTGTCCTCACTATTATTGACTAGGCCTGCAGCAATGGCAGCTTG
TCGACGTGTTTGCATTGTGGATTCCACCTGGGAATGGAGCTGGGAGAAGG
GCAAACGCCCATGCAGCATGACACTTTCTAGCACTGCCTGTCCCTCTTCA
CCGTAAAGCTGTCGGGCGCGGAGGAGGAACTTGGGGAAGCGTAGACGGAC
GGTCACCCCGTCAAGGTCCATCTGGTAGTAGAAAAAGACGCGGGGATGCA
CGCGTTGAATTTCCTCAGCTGTAGGCATAGCGACAATGAGGAGATTGTGT
TGTATCAGAACGACGAGGGCGTCTTTGATTTGGCTGAGCTTGTGGCGGTG
TCCCTCTTCGTCCACGATGTCCCGTCGGGCCTCGGCTAGGGTACATCGGC
CGCGACGCAAGACGTAGGCGCCTACATCGCGGACGACGGAACCAAAATGC
TCGTTTAAAATATTCAGGGCCAGCTTATACTGCTGGTTTGAGGAGGAGGC
TCCGCCGTAGAGTGGTGAAACGGACATGGTGGTGTATTGGCACAAGAGCT
ACAGGGAGGGGACGCAAGCTAGCCTGTGCGGCTGCTGAAGCAGATGATGC
GCGGCTTAGGCTTGTGATTTGCGTTTGTTCCAGAGCTCCCACGTCCTCCT
CCACCGCCTTTCTCGAGCCTTGAGGGTAATCCCTCTCCTTCTTTGCCCTG
TGCTTGTGTTATGAAGATAGCAGGGGGTGGATAAGATGGATGGTATAGAA
GGAGGACAGCGATGATTGATCACTAGCTGAGGCTCAGACTCTACCTTATG
CACTTGCGCACCACAAACCTCAATGCGTATCACACATAGGGTTATCGTTT
GTACAATTCGATCTGCACTGCGCTGCGCCTTGGGTCCTCCCAAAAGTTGA
ACGCACTCCTTCGCAGCCGCCGACCTCCCCACCCTCCACACCAGCACACC
ACCATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCT
AGCTTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCA
CCTCCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCA
CCCCGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAA
GGTGGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTG
TCTCCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTC
CAGCTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTC
CTGCCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACAT
TTATGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCA
ACTTTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGA
TGGGGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAA
CGAATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAA
TTTTTTAAGGAAACCCTGGGTTTGGATATGATGATGAGTCCGAATTACGA
GACATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGG
AGGACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCT
GCCCTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATA
GTGCGAGAGTGCTTGGAGA
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protein sequence of jgi.p|Nanoce1779_2|578670

>mRNA_1988-protein ID=mRNA_1988-protein|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MLGSSRSPLLVPTFVLAFIILTQAFLLPIPDTTSALTFRQAIASSTPAPP
RPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQ
LQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPT
FFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQF
FKETLGLDMMMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAA
LQQQKLDRVTVCDGK*
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mRNA from alignment at scaffold_4:509484..511702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1988 ID=mRNA_1988|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp|location=Sequence derived from alignment at scaffold_4:509484..511702- (Nannochloropsis oceanica)
GCCCCGTAGCCTTTCGTCCTCATCCTCTTTTTCGTGCTATCGTTCGCTTT
TCCTCCCCCCTTCTCCTCCGGGGGCAGCATCATGGCTAGCTCCACAGGAA
TCGCTTCGTCATCCTGACTCTCATCTTGAGTATCAAGTCTCCTGCCCCTT
TTCTTAATCGCCAACGCCTCCGATGCTCGCGCGGTCGCGTCAGCCGCTGC
AGCTGCTGCTGCTTTATTGGCAGCTGCGCGGGAGCCACGGATAGCAGCTG
CGGCACCAGCGCTGGTCAGAGCTTCAGGGGAGGGCGTGAGAAGATCGAAG
GGAACGACACGGACGAGGTAGTGAGAGGTGATCATTTTGTGGATTAGTGC
TTGGAGCTTGGCACCGGTCATTAGGTAAGCTTTTCTGTTGCTGCTACTGC
TGCTGTTGCTGCTCATGTTGTTGCCGCTGTTGGGCTTATTGACGTTGTCC
TCGCCCTTGTCCTCACTATTATTGACTAGGCCTGCAGCAATGGCAGCTTG
TCGACGTGTTTGCATTGTGGATTCCACCTGGGAATGGAGCTGGGAGAAGG
GCAAACGCCCATGCAGCATGACACTTTCTAGCACTGCCTGTCCCTCTTCA
CCGTAAAGCTGTCGGGCGCGGAGGAGGAACTTGGGGAAGCGTAGACGGAC
GGTCACCCCGTCAAGGTCCATCTGGTAGTAGAAAAAGACGCGGGGATGCA
CGCGTTGAATTTCCTCAGCTGTAGGCATAGCGACAATGAGGAGATTGTGT
TGTATCAGAACGACGAGGGCGTCTTTGATTTGGCTGAGCTTGTGGCGGTG
TCCCTCTTCGTCCACGATGTCCCGTCGGGCCTCGGCTAGGGTACATCGGC
CGCGACGCAAGACGTAGGCGCCTACATCGCGGACGACGGAACCAAAATGC
TCGTTTAAAATATTCAGGGCCAGCTTATACTGCTGGTTTGAGGAGGAGGC
TCCGCCGTAGAGTGGTGAAACGGACATGGTGGTGTATTGGCACAAGAGCT
ACAGGGAGGGGACGCAAGCTAGCCTGTGCGGCTGCTGAAGCAGATGATGC
GCGGCTTAGGCTTGTGATTTGCGTTTGTTCCAGAGCTCCCACGTCCTCCT
CCACCGCCTTTCTCGAGCCTTGAGGGTAATCCCTCTCCTTCTTTGCCCTG
TGCTTGTGTTATGAAGATAGCAGGGGGTGGATAAGATGGATGGTATAGAA
GGAGGACAGCGATGATTGATCACTAGCTGAGGCTCAGACTCTACCTTATG
CACTTGCGCACCACAAACCTCAATGCGTATCACACATAGGGTTATCGTTT
GTACAATTCGATCTGCACTGCGCTGCGCCTTGGGTCCTCCCAAAAGTTGA
ACGCACTCCTTCGCAGCCGCCGACCTCCCCACCCTCCACACCAGCACACC
ACCATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCT
AGCTTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCA
CCTCCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCA
CCCCGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAA
GGTGGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTG
TCTCCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTC
CAGCTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTC
CTGCCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACAT
TTATGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCA
ACTTTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGA
TGGGGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAA
CGAATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAA
TTTTTTAAGGAAACCCTGGGTTTGGATATGATGATGAGTCCGAATTACGA
GACATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGG
AGGACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCT
GCCCTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATA
GTGCGAGAGTGCTTGGAGA
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Coding sequence (CDS) from alignment at scaffold_4:509484..511702-

>mRNA_1988 ID=mRNA_1988|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_4:509484..511702- (Nannochloropsis oceanica)
ATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCTAGC
TTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCACCT
CCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCACCC
CGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAAGGT
GGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTGTCT
CCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTCCAG
CTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTCCTG
CCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACATTTA
TGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCAACT
TTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGATGG
GGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAACGA
ATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAATTT
TTTAAGGAAACCCTGGGTTTGGATATGATGATGAGTCCGAATTACGAGAC
ATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGGAGG
ACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCTGCC
CTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATAG
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Synonyms
Publications