jgi.p|Nanoce1779_2|578665, mRNA_1986 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578665
Unique NamemRNA_1986
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1595
Alignment locationscaffold_4:506453..508261 -

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Properties
Property NameValue
TranscriptId578751
TrackFilteredModels2
ProteinId578665
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:506453..508261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578665gene_1986Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578665mRNA_1986-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1986CDS_1986Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1986 ID=mRNA_1986|Name=jgi.p|Nanoce1779_2|578665|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
CGTCAACACATTCGTGGCTTTGTCCATACCCGCTTGGTCTTGCATTGCTT
TTATTGTTTTGTTCTGGTCCTCACGGCACCTTTGTGATAGGGCTTCGTTG
CAACAGCATCTCCTTGCCGGTGTGCAACCCTTTAAGTCGCTGCCCTCTCA
GCCCCAACCACAGGCCTTTCCTCTTCTCTTCATCTTTCCCATACACGTTA
TCATCATCTGCAGCAGCAACAGCACAGCAGATCCCTTGTTCTCACAAACA
TGGCTGCATCAAGCCAAGTGAAGCCTGTGGACATGTTGATGATCGGCACG
GGCGAATACACCACCGGCTACGTCTACGGTGAAGCCTCAGATTCAGACAA
AAGTGCGGGTGTAGTAGCTCTTACCATGTTTGATCTTCGCCGTCGGGGCA
AGGTGGGTAGGCTTGGGCTCTGTGGGACAAATGGAAAAAAGTTCCCAGGA
ATCCGTGCGCATATGGACCGTGCCATCGGACAGACTTACAGTGGGCTTGA
CATGACAATGGACACTTTTCCGGCCGATGACGAGACAGATCCCAAGGCAT
ATGAAATGGCGCTTCAAAGATTCAAATCGGGGGATGCCGTCACTGTCTTT
ACGCCTGACGACACGCATTTTGATATTGCCCTCGCGTGTGTCCAACGTGG
GTTGCACGTGCTCGTGACGAAGCCCGTCGTCAAAACCCTGGCGGAACATC
GTCTGCTCAAGGAGGCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGAA
GTACATAAACGCTTCGATCCCATCTACCTCGATGCCAAGGACAAAATCCA
AGAGCTAGGCGATTTCTCTTACATGTACTCCTACATGTCCCAGCCCAAGC
ATCAACTCGATACCTTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTCC
TACTACCTCAACTCCCACCACACTGATTTTCACGAATGGGCCGTGCAAGG
ACGGTCCCGCCCCATCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCTA
CAAGCCAATATAAAATCGACACAGAGGACACGATTACCCTGTCCGTGCAA
TGGCAGAACCGCGGGCCAAACCCCAGTCTAGGCACGGGTCTCTATACTTC
TTCGTGGGTGGCGCCCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTTT
ACATGGGGCAGGGGGGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTAC
ACAATGGCGAGTGATAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATCC
TTTGTTCATGAAATACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGTG
GGTATGGATATATGAGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGATA
GAGGGGGGGAGGGCGAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGAT
TGGGACGACGGCCTTGACCACAGCGATTTTGGAGGCAGGAAGACGCTCGT
TGGATGCGGGGGGGAGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGAT
AAGGCATGGGCGATGCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAGG
TATGCACCCGTTCCCGACGGATATAAAACCGGTAGTGTTTTAGAG
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protein sequence of jgi.p|Nanoce1779_2|578665

>mRNA_1986-protein ID=mRNA_1986-protein|Name=jgi.p|Nanoce1779_2|578665|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MAASSQVKPVDMLMIGTGEYTTGYVYGEASDSDKSAGVVALTMFDLRRRG
KVGRLGLCGTNGKKFPGIRAHMDRAIGQTYSGLDMTMDTFPADDETDPKA
YEMALQRFKSGDAVTVFTPDDTHFDIALACVQRGLHVLVTKPVVKTLAEH
RLLKEAAEKAGVLVMVEVHKRFDPIYLDAKDKIQELGDFSYMYSYMSQPK
HQLDTFRAWAGKASDISYYLNSHHTDFHEWAVQGRSRPIRVTALASTGVA
TSQYKIDTEDTITLSVQWQNRGPNPSLGTGLYTSSWVAPKSDVHSQQRFF
YMGQGGEVNVDQAHRGYTMASDSYGGGGFKSVNPLFMKYTPSKGKFVGQR
GYGYMSFEAFVDAVAEIEGGRARVEDFDSSLATIGTTALTTAILEAGRRS
LDAGGRGMEIVYGEEADKAWAMPATVGEGGKEGGMHPFPTDIKPVVF*
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mRNA from alignment at scaffold_4:506453..508261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1986 ID=mRNA_1986|Name=jgi.p|Nanoce1779_2|578665|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at scaffold_4:506453..508261- (Nannochloropsis oceanica)
CGTCAACACATTCGTGGCTTTGTCCATACCCGCTTGGTCTTGCATTGCTT
TTATTGTTTTGTTCTGGTCCTCACGGCACCTTTGTGATAGGGCTTCGTTG
CAACAGCATCTCCTTGCCGGTGTGCAACCCTTTAAGTCGCTGCCCTCTCA
GCCCCAACCACAGGCCTTTCCTCTTCTCTTCATCTTTCCCATACACGTTA
TCATCATCTGCAGCAGCAACAGCACAGCAGATCCCTTGTTCTCACAAACA
TGGCTGCATCAAGCCAAGTGAAGCCTGTGGACATGTTGATGATCGGGTAC
GTGCAGCAGACTGTGGGTGGATACGTGTGCTTGACCCTACGGGGGTATGT
GATGTTGTGTGAGAGTTGTGAGCTCTTCACTCTCGCTCTTTGCAGCACTT
TCACCTGCATGCATGTCTTCATGTCAATGATGCGTGGAAAGGCTCGTCCA
AGGTTGAACGATCTTGCACTCACGATCCCTCGTCTCTTCCCCTTCTCTTC
CTTGCCTCAGCACGGGCGAATACACCACCGGCTACGTCTACGGTGAAGCC
TCAGATTCAGACAAAAGTGCGGGTGTAGTAGCTCTTACCATGTTTGATCT
TCGCCGTCGGGGCAAGGTGGGTAGGCTTGGGCTCTGTGGGACAAATGGAA
AAAAGTTCCCAGGAATCCGTGCGCATATGGACCGTGCCATCGGACAGACT
TACAGTGGGCTTGACATGACAATGGACACTTTTCCGGCCGATGACGAGAC
AGATCCCAAGGCATATGAAATGGCGCTTCAAAGATTCAAATCGGGGGATG
CCGTCACTGTCTTTACGCCTGACGACACGCATTTTGATATTGCCCTCGCG
TGTGTCCAACGTGGGTTGCACGTGCTCGTGACGAAGCCCGTCGTCAAAAC
CCTGGCGGAACATCGTCTGCTCAAGGAGGCGGCAGAGAAGGCAGGGGTGT
TGGTGATGGTCGAAGTACATAAACGCTTCGATCCCATCTACCTCGATGCC
AAGGACAAAATCCAAGAGCTAGGCGATTTCTCTTACATGTACTCCTACAT
GTCCCAGCCCAAGCATCAACTCGATACCTTCCGTGCCTGGGCAGGAAAAG
CCTCTGATATCTCCTACTACCTCAACTCCCACCACACTGATTTTCACGAA
TGGGCCGTGCAAGGACGGTCCCGCCCCATCCGCGTCACTGCCCTCGCTTC
CACCGGCGTGGCTACAAGCCAATATAAAATCGACACAGAGGACACGATTA
CCCTGTCCGTGCAATGGCAGAACCGCGGGCCAAACCCCAGTCTAGGCACG
GGTCTCTATACTTCTTCGTGGGTGGCGCCCAAGTCAGACGTGCATTCCCA
GCAGAGGTTTTTTTACATGGGGCAGGGGGGGGAGGTTAATGTTGACCAGG
CCCACCGAGGGTACACAATGGCGAGTGATAGCTACGGAGGAGGGGGCTTT
AAGAGTGTCAATCCTTTGTTCATGAAATACACGCCCAGTAAAGGTAAATT
TGTTGGGCAACGTGGGTATGGATATATGAGTTTTGAGGCATTTGTGGATG
CTGTAGCGGAGATAGAGGGGGGGAGGGCGAGAGTGGAGGACTTTGACTCG
AGCCTGGCGACGATTGGGACGACGGCCTTGACCACAGCGATTTTGGAGGC
AGGAAGACGCTCGTTGGATGCGGGGGGGAGGGGGATGGAGATTGTGTATG
GGGAGGAGGCGGATAAGGCATGGGCGATGCCGGCGACAGTGGGGGAGGGA
GGGAAAGAGGGAGGTATGCACCCGTTCCCGACGGATATAAAACCGGTAGT
GTTTTAGAG
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Coding sequence (CDS) from alignment at scaffold_4:506453..508261-

>mRNA_1986 ID=mRNA_1986|Name=jgi.p|Nanoce1779_2|578665|organism=Nannochloropsis oceanica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_4:506453..508261- (Nannochloropsis oceanica)
CACGGGCGAATACACCACCGGCTACGTCTACGGTGAAGCCTCAGATTCAG
ACAAAAGTGCGGGTGTAGTAGCTCTTACCATGTTTGATCTTCGCCGTCGG
GGCAAGGTGGGTAGGCTTGGGCTCTGTGGGACAAATGGAAAAAAGTTCCC
AGGAATCCGTGCGCATATGGACCGTGCCATCGGACAGACTTACAGTGGGC
TTGACATGACAATGGACACTTTTCCGGCCGATGACGAGACAGATCCCAAG
GCATATGAAATGGCGCTTCAAAGATTCAAATCGGGGGATGCCGTCACTGT
CTTTACGCCTGACGACACGCATTTTGATATTGCCCTCGCGTGTGTCCAAC
GTGGGTTGCACGTGCTCGTGACGAAGCCCGTCGTCAAAACCCTGGCGGAA
CATCGTCTGCTCAAGGAGGCGGCAGAGAAGGCAGGGGTGTTGGTGATGGT
CGAAGTACATAAACGCTTCGATCCCATCTACCTCGATGCCAAGGACAAAA
TCCAAGAGCTAGGCGATTTCTCTTACATGTACTCCTACATGTCCCAGCCC
AAGCATCAACTCGATACCTTCCGTGCCTGGGCAGGAAAAGCCTCTGATAT
CTCCTACTACCTCAACTCCCACCACACTGATTTTCACGAATGGGCCGTGC
AAGGACGGTCCCGCCCCATCCGCGTCACTGCCCTCGCTTCCACCGGCGTG
GCTACAAGCCAATATAAAATCGACACAGAGGACACGATTACCCTGTCCGT
GCAATGGCAGAACCGCGGGCCAAACCCCAGTCTAGGCACGGGTCTCTATA
CTTCTTCGTGGGTGGCGCCCAAGTCAGACGTGCATTCCCAGCAGAGGTTT
TTTTACATGGGGCAGGGGGGGGAGGTTAATGTTGACCAGGCCCACCGAGG
GTACACAATGGCGAGTGATAGCTACGGAGGAGGGGGCTTTAAGAGTGTCA
ATCCTTTGTTCATGAAATACACGCCCAGTAAAGGTAAATTTGTTGGGCAA
CGTGGGTATGGATATATGAGTTTTGAGGCATTTGTGGATGCTGTAGCGGA
GATAGAGGGGGGGAGGGCGAGAGTGGAGGACTTTGACTCGAGCCTGGCGA
CGATTGGGACGACGGCCTTGACCACAGCGATTTTGGAGGCAGGAAGACGC
TCGTTGGATGCGGGGGGGAGGGGGATGGAGATTGTGTATGGGGAGGAGGC
GGATAAGGCATGGGCGATGCCGGCGACAGTGGGGGAGGGAGGGAAAGAGG
GAGGTATGCACCCGTTCCCGACGGATATAAAACCGGTAGTGTTTTAGATG
GCTGCATCAAGCCAAGTGAAGCCTGTGGACATGTTGATGATCGGCACGGG
CGAATACACCACCGGCTACGTCTACGGTGAAGCCTCAGATTCAGACAAAA
GTGCGGGTGTAGTAGCTCTTACCATGTTTGATCTTCGCCGTCGGGGCAAG
GTGGGTAGGCTTGGGCTCTGTGGGACAAATGGAAAAAAGTTCCCAGGAAT
CCGTGCGCATATGGACCGTGCCATCGGACAGACTTACAGTGGGCTTGACA
TGACAATGGACACTTTTCCGGCCGATGACGAGACAGATCCCAAGGCATAT
GAAATGGCGCTTCAAAGATTCAAATCGGGGGATGCCGTCACTGTCTTTAC
GCCTGACGACACGCATTTTGATATTGCCCTCGCGTGTGTCCAACGTGGGT
TGCACGTGCTCGTGACGAAGCCCGTCGTCAAAACCCTGGCGGAACATCGT
CTGCTCAAGGAGGCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGAAGT
ACATAAACGCTTCGATCCCATCTACCTCGATGCCAAGGACAAAATCCAAG
AGCTAGGCGATTTCTCTTACATGTACTCCTACATGTCCCAGCCCAAGCAT
CAACTCGATACCTTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTCCTA
CTACCTCAACTCCCACCACACTGATTTTCACGAATGGGCCGTGCAAGGAC
GGTCCCGCCCCATCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCTACA
AGCCAATATAAAATCGACACAGAGGACACGATTACCCTGTCCGTGCAATG
GCAGAACCGCGGGCCAAACCCCAGTCTAGGCACGGGTCTCTATACTTCTT
CGTGGGTGGCGCCCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTTTAC
ATGGGGCAGGGGGGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTACAC
AATGGCGAGTGATAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATCCTT
TGTTCATGAAATACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGTGGG
TATGGATATATGAGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGATAGA
GGGGGGGAGGGCGAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGATTG
GGACGACGGCCTTGACCACAGCGATTTTGGAGGCAGGAAGACGCTCGTTG
GATGCGGGGGGGAGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGATAA
GGCATGGGCGATGCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAGGTA
TGCACCCGTTCCCGACGGATATAAAACCGGTAGTGTTTTAGATGGCTGCA
TCAAGCCAAGTGAAGCCTGTGGACATGTTGATGATCGG
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Synonyms
Publications