jgi.p|Nanoce1779_2|578658, mRNA_1985 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578658
Unique NamemRNA_1985
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1361
Alignment locationscaffold_4:504874..506234 +

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Properties
Property NameValue
TranscriptId578744
TrackFilteredModels2
ProteinId578658
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:504874..506234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578658gene_1985Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578658mRNA_1985-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1985CDS_1985Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1985 ID=mRNA_1985|Name=jgi.p|Nanoce1779_2|578658|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp
GTTGGGCGTCCCAGGAGCGTATGGAACGGCTATCATCTTATTCACCTCTG
GGGTCAAGCTCGCCTTGCTGCCCGTCACGTACAAGCAATTGGAGTCAGCC
CAAAGAATGCAAGCCCTTGCGCCAAAGGCCAAGGAGCTCAAAGACAAGTA
TGGTAAGAACAAGGCGTTGCTCAACCAGCTCACAGCCAAGCTGTACGAGG
ACGCGGAGGTGAACCCTCTGGCCGGGTGCTTGCCTGCCCTCGCTCAAATC
CCCATTTTTATCGCCCTGTACCGATCGTTGATCAACCTGGCGGGGAACAG
TGATTTTAACGAGCCTTTCCTATGGTTGCCTAGTCTGGCAGGGCCCGTGT
ACGGCCAGCAAAGGGGAATGGACTGGTTGACGCAAAATTGGGTGGAAAAC
GTGCCCTCGCTGGGGTGGCATGACACAATTGCTTACCTGTCGATCCCATG
TATTTTAATTTTGACGCAATCCATCTCCCAGCGGCTGTTGACACCTCCGA
GCGACGACCCCAAGGCAGCGCAAACGCAAAGGATTTTGAAGTATTTGCCG
TTAATGGTCGGTTATTTCTCGTTAAGTGTTCCTTCGGGTTTGGGCTTGTA
CTGGATCACGAATAATTTGATTTCGACAGCGATTTCTCTGACCATCAAAG
AGAAATTTGCAAGGAATCCGATCGTTATTGACGTGGATGTAGATCCGGAG
GATTTGGGCTATGATCCCTCTACGGTGGTGATGTCGTTTGAAGACATGAT
GGCAGAGGCTCAACAGAATGCATTGCCCTCCCGAGAGCCGAAGCGGAAGA
GGCCGACGCCTTCTGCAGCTGGGTTTACGCTAGCGGCAAAGGGTAGTGAT
AGCCGTAGCAGTATAAGTGATGGGTTTGAGGGGAGGGAGGGAGGAAATGG
GGACGAGCAGGAGGGTGGGGTAGGGTCCAAGATAGAGGAGAGAGAGAAAG
CGGGAGTGGACGCATGAAGAAGCGAGGGAGAGAGGAAGAGGTAGTAGGTA
TGCTTTCCATTTGTTCGGGGTTTATGTAATTGTATGGGTGAGAAGGAAAA
AAGAAAGATAGAACGAGTGAAAGTGTGGAGGAGGAGAGAGGAGGACGACG
AGAATCAGTCCACCCTGTCCGACAAGCGAGCAAAAAGTTAGGATTAAGGA
ACACAGGTAGACGCCACCGTTCAAAGCGTACATGCATGAGTCAAAGAAAA
TTTCACCGTAGAGATTTTGACCCTTTCATTGGCCGATAAGAAGATATAAA
ATGAAACTAAAAGGTGAAGATGAAGATGATGGGTACTACAGACGGAGAAG
ACAGACAAAGAAGAGAAGAAAAGGCAATCAAGGGAAGAAAGGACGAGATG
CGACTTTGAAC
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protein sequence of jgi.p|Nanoce1779_2|578658

>mRNA_1985-protein ID=mRNA_1985-protein|Name=jgi.p|Nanoce1779_2|578658|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MQALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPI
FIALYRSLINLAGNSDFNEPFLWLPSLAGPVYGQQRGMDWLTQNWVENVP
SLGWHDTIAYLSIPCILILTQSISQRLLTPPSDDPKAAQTQRILKYLPLM
VGYFSLSVPSGLGLYWITNNLISTAISLTIKEKFARNPIVIDVDVDPEDL
GYDPSTVVMSFEDMMAEAQQNALPSREPKRKRPTPSAAGFTLAAKGSDSR
SSISDGFEGREGGNGDEQEGGVGSKIEEREKAGVDA*
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mRNA from alignment at scaffold_4:504874..506234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1985 ID=mRNA_1985|Name=jgi.p|Nanoce1779_2|578658|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp|location=Sequence derived from alignment at scaffold_4:504874..506234+ (Nannochloropsis oceanica)
GTTGGGCGTCCCAGGAGCGTATGGAACGGCTATCATCTTATTCACCTCTG
GGGTCAAGCTCGCCTTGCTGCCCGTCACGTACAAGCAATTGGAGTCAGCC
CAAAGAATGCAAGCCCTTGCGCCAAAGGCCAAGGAGCTCAAAGACAAGTA
TGGTAAGAACAAGGCGTTGCTCAACCAGCTCACAGCCAAGCTGTACGAGG
ACGCGGAGGTGAACCCTCTGGCCGGGTGCTTGCCTGCCCTCGCTCAAATC
CCCATTTTTATCGCCCTGTACCGATCGTTGATCAACCTGGCGGGGAACAG
TGATTTTAACGAGCCTTTCCTATGGTTGCCTAGTCTGGCAGGGCCCGTGT
ACGGCCAGCAAAGGGGAATGGACTGGTTGACGCAAAATTGGGTGGAAAAC
GTGCCCTCGCTGGGGTGGCATGACACAATTGCTTACCTGTCGATCCCATG
TATTTTAATTTTGACGCAATCCATCTCCCAGCGGCTGTTGACACCTCCGA
GCGACGACCCCAAGGCAGCGCAAACGCAAAGGATTTTGAAGTATTTGCCG
TTAATGGTCGGTTATTTCTCGTTAAGTGTTCCTTCGGGTTTGGGCTTGTA
CTGGATCACGAATAATTTGATTTCGACAGCGATTTCTCTGACCATCAAAG
AGAAATTTGCAAGGAATCCGATCGTTATTGACGTGGATGTAGATCCGGAG
GATTTGGGCTATGATCCCTCTACGGTGGTGATGTCGTTTGAAGACATGAT
GGCAGAGGCTCAACAGAATGCATTGCCCTCCCGAGAGCCGAAGCGGAAGA
GGCCGACGCCTTCTGCAGCTGGGTTTACGCTAGCGGCAAAGGGTAGTGAT
AGCCGTAGCAGTATAAGTGATGGGTTTGAGGGGAGGGAGGGAGGAAATGG
GGACGAGCAGGAGGGTGGGGTAGGGTCCAAGATAGAGGAGAGAGAGAAAG
CGGGAGTGGACGCATGAAGAAGCGAGGGAGAGAGGAAGAGGTAGTAGGTA
TGCTTTCCATTTGTTCGGGGTTTATGTAATTGTATGGGTGAGAAGGAAAA
AAGAAAGATAGAACGAGTGAAAGTGTGGAGGAGGAGAGAGGAGGACGACG
AGAATCAGTCCACCCTGTCCGACAAGCGAGCAAAAAGTTAGGATTAAGGA
ACACAGGTAGACGCCACCGTTCAAAGCGTACATGCATGAGTCAAAGAAAA
TTTCACCGTAGAGATTTTGACCCTTTCATTGGCCGATAAGAAGATATAAA
ATGAAACTAAAAGGTGAAGATGAAGATGATGGGTACTACAGACGGAGAAG
ACAGACAAAGAAGAGAAGAAAAGGCAATCAAGGGAAGAAAGGACGAGATG
CGACTTTGAAC
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Coding sequence (CDS) from alignment at scaffold_4:504874..506234+

>mRNA_1985 ID=mRNA_1985|Name=jgi.p|Nanoce1779_2|578658|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_4:504874..506234+ (Nannochloropsis oceanica)
ATGCAAGCCCTTGCGCCAAAGGCCAAGGAGCTCAAAGACAAGTATGGTAA
GAACAAGGCGTTGCTCAACCAGCTCACAGCCAAGCTGTACGAGGACGCGG
AGGTGAACCCTCTGGCCGGGTGCTTGCCTGCCCTCGCTCAAATCCCCATT
TTTATCGCCCTGTACCGATCGTTGATCAACCTGGCGGGGAACAGTGATTT
TAACGAGCCTTTCCTATGGTTGCCTAGTCTGGCAGGGCCCGTGTACGGCC
AGCAAAGGGGAATGGACTGGTTGACGCAAAATTGGGTGGAAAACGTGCCC
TCGCTGGGGTGGCATGACACAATTGCTTACCTGTCGATCCCATGTATTTT
AATTTTGACGCAATCCATCTCCCAGCGGCTGTTGACACCTCCGAGCGACG
ACCCCAAGGCAGCGCAAACGCAAAGGATTTTGAAGTATTTGCCGTTAATG
GTCGGTTATTTCTCGTTAAGTGTTCCTTCGGGTTTGGGCTTGTACTGGAT
CACGAATAATTTGATTTCGACAGCGATTTCTCTGACCATCAAAGAGAAAT
TTGCAAGGAATCCGATCGTTATTGACGTGGATGTAGATCCGGAGGATTTG
GGCTATGATCCCTCTACGGTGGTGATGTCGTTTGAAGACATGATGGCAGA
GGCTCAACAGAATGCATTGCCCTCCCGAGAGCCGAAGCGGAAGAGGCCGA
CGCCTTCTGCAGCTGGGTTTACGCTAGCGGCAAAGGGTAGTGATAGCCGT
AGCAGTATAAGTGATGGGTTTGAGGGGAGGGAGGGAGGAAATGGGGACGA
GCAGGAGGGTGGGGTAGGGTCCAAGATAGAGGAGAGAGAGAAAGCGGGAG
TGGACGCATGA
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Synonyms
Publications