jgi.p|Nanoce1779_2|578652, mRNA_1984 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578652
Unique NamemRNA_1984
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1536
Alignment locationscaffold_4:502000..503886 -

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Properties
Property NameValue
TranscriptId578738
TrackFilteredModels2
ProteinId578652
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:502000..503886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578652gene_1984Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578652mRNA_1984-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1984CDS_1984Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1984 ID=mRNA_1984|Name=jgi.p|Nanoce1779_2|578652|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
ACAGACCACAGCGTCACCGGCAGCTGGTTAAATAGGGTTTGAGTCACTAA
CAGAACTCATTCCTCCAGCTACGGCTTCATCGTCTTCGCGACCACCTCTA
CAAGAAACTACTTCAGTCACCCCCTAATCAACCATGCCCGTCTGGAACCG
CGCCAAGAAGGAGGATTACTTCGAAAAGGTCGAAGAGCTCCTGGGTTCCT
ACACCAAGGTCTTCATCGTCGGGGTCGACAATGTCGGCTCCAAGCAGATG
CAGCAGATTCGCCATGCCCTCCGCGGCAGCGCCACCGTCCTCATGGGGAA
GAACACGCGCATCCGGAAGGTCATCAACATGTTCCTCCGCAAAAACCCCG
ACCACCCTATCGAGCAGCTCCTTCAGTTCGTTGGCGGCAACGTCGGCTTT
GTCTTCACCAACGGCGAGCTCGGCCTGGTGCGTGAGACCGTGGAGAAGAA
CCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAACTGCCCCCTGTGATGTGA
TCATCCCCCCCGGCCCCACCGGCTGCGACCCCGGCCAGACCTCTTTTTTC
CAGGCCTTGCAAATCGCCACCAAGATTACCAAGGGGCAGATTGAGATAAC
CAGCGACGTGCAGATCCTGAAGGAAGGTGACAAGGTCGGCAATTCCGAAG
CCATCCTACTCCAGAAACTGAATATTCTCCCCTTCACTTACGGACTGGTC
ATCAAGACCATCTACGACAACGGCTCCCTCTTCGACGCCAAGGTCCTGGA
TCTCACCGATGCTGACTTGGCCGCTAAGTTCGCCGTGGCCGTGCGTAATG
TAGCCGCTATCTCGCTCAAGCTTGGGTATCCTACCCTTGCCTCCCTCCCT
CATTCCATCGCCAATGCCTTCAAGGCTTGCGTTGCCATCACGGTGGGCCT
CGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTTTAAGGCCTACTTGAAGG
ACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTGGAGAGGCGGCCGCTGCC
GCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAGGAGAAGGAAGAGGAAGA
GGCTGACCTTGGGGCTGGCAACATGTTCGGTGGAGGTGATGGATATTAAG
GAGCGATGTGGGCCTTGCCTGATGCGTCGGAATTCTTGTTCTTCCCGTCC
CTCCCTTCTCCTTCTCTTTTTTTCGTCTTGTAACTGGCAATTGCTTTTGG
GAGGCAGGAAAGAGAGGGAAAGGTGGAGGGGGGACGCAGTAGGGTAAAGA
TTGCAAGACACCGATGGTGCGCACTGTCCGCTGGCCCTACGGGATCCACT
TGTTTCCGTGGAAAGGAGGTCGCAGGAAAGAGGAGAAAGAGGGAGAGACT
AAAAAAATGGAAGAAAAGTTGTGGTGGAAGTGAGACGGAGGGGTAGGTTA
TAAATAACGGTGAGCCATAGCACAGCACACTTGATATTTGGGCCTTTCTC
GCTGGTGTGTCCTAACCAACGAAAGACAAGAAAGAAGAGAAGAAGAAAAA
GAGTAGAAGAAAAGGAAAATCGTTTTTTCATCTCAG
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protein sequence of jgi.p|Nanoce1779_2|578652

>mRNA_1984-protein ID=mRNA_1984-protein|Name=jgi.p|Nanoce1779_2|578652|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPVWNRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSA
TVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVR
ETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITK
GQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLF
DAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACV
AITVGLEEFSFEKADPFKAYLKDPSAFASAGGGGEAAAAAPAGDAKPAKE
EKEEEEADLGAGNMFGGGDGY*
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mRNA from alignment at scaffold_4:502000..503886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1984 ID=mRNA_1984|Name=jgi.p|Nanoce1779_2|578652|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_4:502000..503886- (Nannochloropsis oceanica)
ACAGACCACAGCGTCACCGGCAGCTGGTTAAATAGGGTTTGAGTCACTAA
CAGAACTCATTCCTCCAGCTACGGCTTCATCGTCTTCGCGACCACCTCTA
CAAGAAACTACTTCAGGTGAGGACCGTGTGACGAGGTGCCTTCACTTGGA
GCAAGGGACAACAGGCACAATTTGTATGCTTGGTTTGGATTGTCATGGTA
GCAGTAACAGCAGGGATGGAGAGAGGATGCGGCGGTTCCCCGTCCCGTGT
CGCTTACTTTCCAGCTCGAGCACCCCAAAAGCACGATGGCTCCCCCCCCC
CCCCCTTCAATGTACTCTAGTCTTCCCCTGTCTGGAGCGCTGGTGCATGA
ATTGTCTCAGCTTCCAATAAATTTATCGTTTGGCTTATTTGATATTTCCT
CTTAACGCAAATCCATCCATCCCCGTCCTTGCTCCCCCCCTCGCCCCCCC
CCCCCCCCCCCGAACAGTCACCCCCTAATCAACCATGCCCGTCTGGAACC
GCGCCAAGAAGGAGGATTACTTCGAAAAGGTCGAAGAGCTCCTGGGTTCC
TACACCAAGGTCTTCATCGTCGGGGTCGACAATGTCGGCTCCAAGCAGAT
GCAGCAGATTCGCCATGCCCTCCGCGGCAGCGCCACCGTCCTCATGGGGA
AGAACACGCGCATCCGGAAGGTCATCAACATGTTCCTCCGCAAAAACCCC
GACCACCCTATCGAGCAGCTCCTTCAGTTCGTTGGCGGCAACGTCGGCTT
TGTCTTCACCAACGGCGAGCTCGGCCTGGTGCGTGAGACCGTGGAGAAGA
ACCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAACTGCCCCCTGTGATGTG
ATCATCCCCCCCGGCCCCACCGGCTGCGACCCCGGCCAGACCTCTTTTTT
CCAGGCCTTGCAAATCGCCACCAAGATTACCAAGGGGCAGATTGAGATAA
CCAGCGACGTGCAGATCCTGAAGGAAGGTGACAAGGTCGGCAATTCCGAA
GCCATCCTACTCCAGAAACTGAATATTCTCCCCTTCACTTACGGACTGGT
CATCAAGACCATCTACGACAACGGCTCCCTCTTCGACGCCAAGGTCCTGG
ATCTCACCGATGCTGACTTGGCCGCTAAGTTCGCCGTGGCCGTGCGTAAT
GTAGCCGCTATCTCGCTCAAGCTTGGGTATCCTACCCTTGCCTCCCTCCC
TCATTCCATCGCCAATGCCTTCAAGGCTTGCGTTGCCATCACGGTGGGCC
TCGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTTTAAGGCCTACTTGAAG
GACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTGGAGAGGCGGCCGCTGC
CGCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAGGAGAAGGAAGAGGAAG
AGGCTGACCTTGGGGCTGGCAACATGTTCGGTGGAGGTGATGGATATTAA
GGAGCGATGTGGGCCTTGCCTGATGCGTCGGAATTCTTGTTCTTCCCGTC
CCTCCCTTCTCCTTCTCTTTTTTTCGTCTTGTAACTGGCAATTGCTTTTG
GGAGGCAGGAAAGAGAGGGAAAGGTGGAGGGGGGACGCAGTAGGGTAAAG
ATTGCAAGACACCGATGGTGCGCACTGTCCGCTGGCCCTACGGGATCCAC
TTGTTTCCGTGGAAAGGAGGTCGCAGGAAAGAGGAGAAAGAGGGAGAGAC
TAAAAAAATGGAAGAAAAGTTGTGGTGGAAGTGAGACGGAGGGGTAGGTT
ATAAATAACGGTGAGCCATAGCACAGCACACTTGATATTTGGGCCTTTCT
CGCTGGTGTGTCCTAACCAACGAAAGACAAGAAAGAAGAGAAGAAGAAAA
AGAGTAGAAGAAAAGGAAAATCGTTTTTTCATCTCAG
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Coding sequence (CDS) from alignment at scaffold_4:502000..503886-

>mRNA_1984 ID=mRNA_1984|Name=jgi.p|Nanoce1779_2|578652|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_4:502000..503886- (Nannochloropsis oceanica)
ATGCCCGTCTGGAACCGCGCCAAGAAGGAGGATTACTTCGAAAAGGTCGA
AGAGCTCCTGGGTTCCTACACCAAGGTCTTCATCGTCGGGGTCGACAATG
TCGGCTCCAAGCAGATGCAGCAGATTCGCCATGCCCTCCGCGGCAGCGCC
ACCGTCCTCATGGGGAAGAACACGCGCATCCGGAAGGTCATCAACATGTT
CCTCCGCAAAAACCCCGACCACCCTATCGAGCAGCTCCTTCAGTTCGTTG
GCGGCAACGTCGGCTTTGTCTTCACCAACGGCGAGCTCGGCCTGGTGCGT
GAGACCGTGGAGAAGAACCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAAC
TGCCCCCTGTGATGTGATCATCCCCCCCGGCCCCACCGGCTGCGACCCCG
GCCAGACCTCTTTTTTCCAGGCCTTGCAAATCGCCACCAAGATTACCAAG
GGGCAGATTGAGATAACCAGCGACGTGCAGATCCTGAAGGAAGGTGACAA
GGTCGGCAATTCCGAAGCCATCCTACTCCAGAAACTGAATATTCTCCCCT
TCACTTACGGACTGGTCATCAAGACCATCTACGACAACGGCTCCCTCTTC
GACGCCAAGGTCCTGGATCTCACCGATGCTGACTTGGCCGCTAAGTTCGC
CGTGGCCGTGCGTAATGTAGCCGCTATCTCGCTCAAGCTTGGGTATCCTA
CCCTTGCCTCCCTCCCTCATTCCATCGCCAATGCCTTCAAGGCTTGCGTT
GCCATCACGGTGGGCCTCGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTT
TAAGGCCTACTTGAAGGACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTG
GAGAGGCGGCCGCTGCCGCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAG
GAGAAGGAAGAGGAAGAGGCTGACCTTGGGGCTGGCAACATGTTCGGTGG
AGGTGATGGATATTAA
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Synonyms
Publications