Properties
| Property Name | Value |
|---|
| TranscriptId | 578735 |
| Track | FilteredModels2 |
| ProteinId | 578649 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:500757..501999 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1983 ID=mRNA_1983|Name=jgi.p|Nanoce1779_2|578649|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
TAATCTCGGCAGATGCATGACGGCGGACACTACCAGGGCGAGACGAGGGC
GACGTCTATGGGCATCACGCCCTGTGGTTGTGATTGTGGTATGTGTGGAT
GGTGGTGGGACAAAAAGTTTTAAGATAGAGCAATGAGCAGCAGTTGCAAC
CGATCGCCGAGTCTTGTTGCTCCTGCTCTCGTGCTTTCTTGATTGCTGTT
GTAACCCATTTCCCCACGCCATGTCCATCCACACTACCATCATAGCCTCA
TGTCGGCCGCCAGAGCTATGTGGTCGCTCGTGCTCTTTCTTGCTTCCCTA
TGTGTGGCTCAAGCGTTTTTTCCTGCCCTCCCCCACCCTTCATCAAAGCC
GCTATCGAATCGGCCACTACTGGCTGCTGCCGCTCGTGCGCGCTCCGTTT
CTTTTGCCGCATTGAAAAATGCGGCCTCGGACGACAACGAAGATGCTGCC
GCTGCGCCTTCCAAAGCAAGCCCCATCAGGAAGCGGAAGCGCAAGGTGCC
CTTGCCCGCCGAGCTCCTGCAAGAAAATGACGATAAGGATAACGATGGTG
CCGTAGCATCCTCTGCCATGTCTCCCTCCTTGTCTTCACCACCACCATCG
TCTACCCCGCAGCAGACAGGGGGAAGGGAGGTTGATTTGCAAGAGCGACT
GCAACAGGACATTGCGCGTTTCCGCAAGAAGGAAGTGGAAGCCAAGGTTA
GTGATGGACAATTAACAGGCTTCTCTGCTTTCGCAGACAAGGCCGGGGGG
ATCTTGAATAAAGTGCTGGTGGCTGACTTCTTTGTGATTTTGGCCTTTTT
TGGTTGGTTCGTAACCGGGGTGTTTTTCAAGTCTGTGTTGAGCGATGCGT
CTGTGATTGATAAATTCACGGACATTTGGATGCCTGTCATACAACCAGCG
TTGGGTCTGCTGATGGCGGGGACGTTAGGGGTAGGAGCTTTAAACAATGT
TGCGGCGCGGACGCAGGAGGCGAACGAGAGGAAGGGAATGGATGAGAGGA
GAAAGAATGGATAGGAGGGAGGAGAGGGAGAGGACGGAGAGATAATGGGA
AAACTTGTGTGACTCGTGTTACTTGTAATTGCAGTTAAAATTAAAGGTCT
GGACCAAGAAGAAGAAGGCAAGGCTAATGGTGGTCGGTGCCTGGG back to topprotein sequence of jgi.p|Nanoce1779_2|578649 >mRNA_1983-protein ID=mRNA_1983-protein|Name=jgi.p|Nanoce1779_2|578649|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MSAARAMWSLVLFLASLCVAQAFFPALPHPSSKPLSNRPLLAAAARARSV
SFAALKNAASDDNEDAAAAPSKASPIRKRKRKVPLPAELLQENDDKDNDG
AVASSAMSPSLSSPPPSSTPQQTGGREVDLQERLQQDIARFRKKEVEAKV
SDGQLTGFSAFADKAGGILNKVLVADFFVILAFFGWFVTGVFFKSVLSDA
SVIDKFTDIWMPVIQPALGLLMAGTLGVGALNNVAARTQEANERKGMDER
RKNG* back to topmRNA from alignment at scaffold_4:500757..501999+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1983 ID=mRNA_1983|Name=jgi.p|Nanoce1779_2|578649|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_4:500757..501999+ (Nannochloropsis oceanica)
TAATCTCGGCAGATGCATGACGGCGGACACTACCAGGGCGAGACGAGGGC
GACGTCTATGGGCATCACGCCCTGTGGTTGTGATTGTGGTATGTGTGGAT
GGTGGTGGGACAAAAAGTTTTAAGATAGAGCAATGAGCAGCAGTTGCAAC
CGATCGCCGAGTCTTGTTGCTCCTGCTCTCGTGCTTTCTTGATTGCTGTT
GTAACCCATTTCCCCACGCCATGTCCATCCACACTACCATCATAGCCTCA
TGTCGGCCGCCAGAGCTATGTGGTCGCTCGTGCTCTTTCTTGCTTCCCTA
TGTGTGGCTCAAGCGTTTTTTCCTGCCCTCCCCCACCCTTCATCAAGTAA
GTGAGAGATACAGAGGAGGTCAAAAAGCTCAACCGGAAGCTCTCGAAAAA
TTATGCACATAGTAGCTTACATTTCCCTGCCCAAACATGCAAAGAGCCGC
TATCGAATCGGCCACTACTGGCTGCTGCCGCTCGTGCGCGCTCCGTTTCT
TTTGCCGCATTGAAAAATGCGGCCTCGGACGACAACGAAGATGCTGCCGC
TGCGCCTTCCAAAGCAAGCCCCATCAGGAAGCGGAAGCGCAAGGTGCCCT
TGCCCGCCGAGCTCCTGCAAGAAAATGACGATAAGGATAACGATGGTGCC
GTAGCATCCTCTGCCATGTCTCCCTCCTTGTCTTCACCACCACCATCGTC
TACCCCGCAGCAGACAGGGGGAAGGGAGGTTGATTTGCAAGAGCGACTGC
AACAGGACATTGCGCGTTTCCGCAAGAAGGAAGTGGAAGCCAAGGTTAGT
GATGGACAATTAACAGGCTTCTCTGCTTTCGCAGACAAGGCCGGGGGGAT
CTTGAATAAAGTGCTGGTGGCTGACTTCTTTGTGATTTTGGCCTTTTTTG
GTTGGTTCGTAACCGGGGTGTTTTTCAAGTCTGTGTTGAGCGATGCGTCT
GTGATTGATAAATTCACGGACATTTGGATGCCTGTCATACAACCAGCGTT
GGGTCTGCTGATGGCGGGGACGTTAGGGGTAGGAGCTTTAAACAATGTTG
CGGCGCGGACGCAGGAGGCGAACGAGAGGAAGGGAATGGATGAGAGGAGA
AAGAATGGATAGGAGGGAGGAGAGGGAGAGGACGGAGAGATAATGGGAAA
ACTTGTGTGACTCGTGTTACTTGTAATTGCAGTTAAAATTAAAGGTCTGG
ACCAAGAAGAAGAAGGCAAGGCTAATGGTGGTCGGTGCCTGGG back to topCoding sequence (CDS) from alignment at scaffold_4:500757..501999+ >mRNA_1983 ID=mRNA_1983|Name=jgi.p|Nanoce1779_2|578649|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_4:500757..501999+ (Nannochloropsis oceanica)
ATGTCGGCCGCCAGAGCTATGTGGTCGCTCGTGCTCTTTCTTGCTTCCCT
ATGTGTGGCTCAAGCGTTTTTTCCTGCCCTCCCCCACCCTTCATCAAAGC
CGCTATCGAATCGGCCACTACTGGCTGCTGCCGCTCGTGCGCGCTCCGTT
TCTTTTGCCGCATTGAAAAATGCGGCCTCGGACGACAACGAAGATGCTGC
CGCTGCGCCTTCCAAAGCAAGCCCCATCAGGAAGCGGAAGCGCAAGGTGC
CCTTGCCCGCCGAGCTCCTGCAAGAAAATGACGATAAGGATAACGATGGT
GCCGTAGCATCCTCTGCCATGTCTCCCTCCTTGTCTTCACCACCACCATC
GTCTACCCCGCAGCAGACAGGGGGAAGGGAGGTTGATTTGCAAGAGCGAC
TGCAACAGGACATTGCGCGTTTCCGCAAGAAGGAAGTGGAAGCCAAGGTT
AGTGATGGACAATTAACAGGCTTCTCTGCTTTCGCAGACAAGGCCGGGGG
GATCTTGAATAAAGTGCTGGTGGCTGACTTCTTTGTGATTTTGGCCTTTT
TTGGTTGGTTCGTAACCGGGGTGTTTTTCAAGTCTGTGTTGAGCGATGCG
TCTGTGATTGATAAATTCACGGACATTTGGATGCCTGTCATACAACCAGC
GTTGGGTCTGCTGATGGCGGGGACGTTAGGGGTAGGAGCTTTAAACAATG
TTGCGGCGCGGACGCAGGAGGCGAACGAGAGGAAGGGAATGGATGAGAGG
AGAAAGAATGGATAGATGTCGGCCGCCAGAGCTATGTGGTCGCTCGTGCT
CTTTCTTGCTTCCCTATGTGTGGCTCAAGCGTTTTTTCCTGCCCTCCCCC
ACCCTTCATCAAAGCCGCTATCGAATCGGCCACTACTGGCTGCTGCCGCT
CGTGCGCGCTCCGTTTCTTTTGCCGCATTGAAAAATGCGGCCTCGGACGA
CAACGAAGATGCTGCCGCTGCGCCTTCCAAAGCAAGCCCCATCAGGAAGC
GGAAGCGCAAGGTGCCCTTGCCCGCCGAGCTCCTGCAAGAAAATGACGAT
AAGGATAACGATGGTGCCGTAGCATCCTCTGCCATGTCTCCCTCCTTGTC
TTCACCACCACCATCGTCTACCCCGCAGCAGACAGGGGGAAGGGAGGTTG
ATTTGCAAGAGCGACTGCAACAGGACATTGCGCGTTTCCGCAAGAAGGAA
GTGGAAGCCAAGGTTAGTGATGGACAATTAACAGGCTTCTCTGCTTTCGC
AGACAAGGCCGGGGGGATCTTGAATAAAGTGCTGGTGGCTGACTTCTTTG
TGATTTTGGCCTTTTTTGGTTGGTTCGTAACCGGGGTGTTTTTCAAGTCT
GTGTTGAGCGATGCGTCTGTGATTGATAAATTCACGGACATTTGGATGCC
TGTCATACAACCAGCGTTGGGTCTGCTGATGGCGGGGACGTTAGGGGTAG
GAGCTTTAAACAATGTTGCGGCGCGGACGCAGGAGGCGAACGAGAGGAAG
GGAATGGATGAGAGGAGAAAGAATGGATAG back to top
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