jgi.p|Nanoce1779_2|578643, mRNA_1981 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578643
Unique Name	mRNA_1981
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1920
Alignment location	scaffold_4:490211..493840 -

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Properties


Property Name	Value
TranscriptId	578729
Track	FilteredModels2
ProteinId	578643

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:490211..493840 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578643	gene_1981	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578643	mRNA_1981-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1981	CDS_1981	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:490211..493840-
coding sequence from alignment at scaffold_4:490211..493840-

mRNA sequence

>mRNA_1981 ID=mRNA_1981|Name=jgi.p|Nanoce1779_2|578643|organism=Nannochloropsis oceanica|type=mRNA|length=1920bp
AGGCGAGGAAGGGAGGGAGGGAGGGCAGGTGTCTACGAACTCTGATTTGC
GCGCCTTGTTGACCGCGACGATGGCTTCGTCTCAATCAAGGGATGAAGAA
GGGAGTGACGAGGATGTGGACGAGGAGGAGAGGGAGGATAAAAAGTGGGA
GAGAAATGGACGTGACATTGGGACGGAAGAGAAAGAAGGGGGTGAATCGC
CGAAAGCGAGTACAAGAGGTGTGCTTCGACCTACTGCTATTCGAGGCGGG
ATGGCTCAAGCACCCACAGTGAGAGGCTCCCCAGGGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTGCAATATCGCATCACCTTATTGGACGACCGT
TTCCCCACCATGCACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAAG
CCGAAAGCAAGGAAAGCACCGGACTTGCCCATCTTTCGCTCGTCCTTCTC
TGCTCCCTCTGCTGCCGCAGCTGGCGACGGGGTTCGAGGCTCCATGTCGT
CCTCCTCTTCTTCCCTTTCGTTGTCATCGTCGTCCGCCTCTGTCTCGTCC
TCGTCTCGACGGCACCGACGCAGAAAGCATCAGAATTACCCTTCCGGTGG
ATTAAGGCAGATATCTGATTTCAATCGAGCACGGTGGGTGGCCATGATGG
GGGAAGCTGGAGGAGGAGGAGGTGTGGGGGAAGGAGGAGGAGGGGGGAAA
GGAGGAGGAGGAAAAAGGAATAAGGAAGGAAAGCGTGGTAGGAAAGGGAA
GATAGGAGGAGGAGAAAAGGGAGAAGGAGGAGGAGAAGCAAGAGGAGTAC
CAAGAGGAGTAGCACGAGGAGGAGCAGGAAGTGGTGGAGAGTCAGCGCTG
TTGAGTGTGAAAAGGAAGGAGGAAGATGAAGACACGAAAGAAGGCAAAAG
AGTGGATGAAGCGCGGAAAGGAGGAAACTCCGTAAGGAAATCTTCAGAAA
GCAGCAACGCCAATCCCAGTAGCAGCAAGAGGAGCTCAATCAATCTGGAC
TTGAGTCGTATATGGGGACAGATTGAGGAGGAGATGCGGCGTTAGGAATG
TATATTTTGCAGAAATGCCCCTGGTGCTCAAATTCTACCGTCTACTTAAA
GTCTGCAGGGTGCCACCCTGCAATCCCTTCGTGCGAGAGGAAAATCAATA
CCTTTAGCACCGCTGCGGTGCCCGCGTGTGCCCTTCTCCGAGGCCGACAC
ACAAAAAAAAGGGATGGCGACGACGACGCTGCGGAAGCTGTTTTTGCACT
TCATGAGGATAAAGGGTAAAAGAAGGTATGAATTTAGCTCCTGATATTCG
GCATATCTTTATTCAAGAGTTTTCCTTCTTTTCTCAGTTGTTGGGGGAAT
TCTAGCTTGTATTCTTGGTCAATTGTAATAAAATCGAATGGCAAGGAAAG
GAAAAAGATGAAGAGATAGTTGGTTGATGACGGTTAACGACGCCTCAGTC
GACTACCCCGATCTGCCGCGCGCATTTCTCGCGTTGCGGTGGCCTGTGAG
GGCCAAATTTTATAGTCATAGTTACTCTGACAGCTCTTCTTCCTCTTTTG
TTTCTTAATCCTCTCCAGTCTATCCTCTTGTCTAATTTCCTCTTAAATTG
CGACAGTCTCAGTGATCATTGCCATTACCTTCTTTCCTACATATATCCAC
GCACACCCCCGAAAACAGGAGCGCTTCATAAAATAAGACAATACAAGCTG
AGAGACTAGATTTTGATATGTATTGAACGTGTATGTGAGCGTATGTGTAC
ATGGCTCGAAGAGAAGGAGTAAATATTAAAGTGTGTGTGCAAATCAGACC
CTCCCTAAGAAATGAAACCAAAAAAGAAAGGCACCAGAAAGCCACTCAAA
CATAAAAGTTTGATGGTCAATTTAAGACAAGCACAAAGGATGGATAAAGA
AAAGGTAATTCTTGATGCAA

protein sequence of jgi.p|Nanoce1779_2|578643

>mRNA_1981-protein ID=mRNA_1981-protein|Name=jgi.p|Nanoce1779_2|578643|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MASSQSRDEEGSDEDVDEEEREDKKWERNGRDIGTEEKEGGESPKASTRG
VLRPTAIRGGMAQAPTVRGSPGDSSSSSSSSSSAISHHLIGRPFPHHAPS
SSSSSSSSSKPKARKAPDLPIFRSSFSAPSAAAAGDGVRGSMSSSSSSLS
LSSSSASVSSSSRRHRRRKHQNYPSGGLRQISDFNRARWVAMMGEAGGGG
GVGEGGGGGKGGGGKRNKEGKRGRKGKIGGGEKGEGGGEARGVPRGVARG
GAGSGGESALLSVKRKEEDEDTKEGKRVDEARKGGNSVRKSSESSNANPS
SSKRSSINLDLSRIWGQIEEEMRR*

mRNA from alignment at scaffold_4:490211..493840-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1981 ID=mRNA_1981|Name=jgi.p|Nanoce1779_2|578643|organism=Nannochloropsis oceanica|type=mRNA|length=3630bp|location=Sequence derived from alignment at scaffold_4:490211..493840- (Nannochloropsis oceanica)
AGGCGAGGAAGGGAGGGAGGGAGGGCAGGTGTCTACGAACTCTGATTTGC
GCGCCTTGTTGACCGCGACGATGGCTTCGTCTCAATCAAGGGATGAAGAA
GGGAGTGACGAGGATGTGGACGAGGAGGAGAGGGAGGATAAAAAGTGGGA
GAGAAATGGACGTGACATTGGGACGGAAGAGAAAGAAGGGGGTGAATCGC
CGAAAGCGAGTACAAGAGGTGTGCTTCGACCTACTGCTATTCGAGGCGGG
ATGGCTCAAGCACCCACAGTGAGAGGCTCCCCAGGGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTGCAATATCGCATCACCTTATTGGACGACCGT
TTCCCCACCATGCACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAAG
CCGAAAGCAAGGAAAGCACCGGACTTGCCCATCTTTCGCTCGTCCTTCTC
TGCTCCCTCTGCTGCCGCAGCTGGCGACGGGGTTCGAGGCTCCATGTCGT
CCTCCTCTTCTTCCCTTTCGTTGTCATCGTCGTCCGCCTCTGTCTCGTCC
TCGTCTCGACGGCACCGACGCAGAAAGCATCAGAATTACCCTTCCGGTGG
ATTAAGGCAGATATCTGATTTCAATCGAGCACGGTGGGTGGCCATGATGG
GGGAAGCTGGAGGAGGAGGAGGTGTGGGGGAAGGAGGAGGAGGGGGGAAA
GGAGGAGGAGGAAAAAGGAATAAGGAAGGAAAGCGTGGTAGGAAAGGGAA
GATAGGAGGAGGAGAAAAGGGAGAAGGAGGAGGAGAAGCAAGAGGAGTAC
CAAGAGGAGTAGCACGAGGAGGAGCAGGAAGTGGTGGAGAGTCAGCGCTG
TTGAGTGTGAAAAGGAAGGAGGAAGATGAAGACACGAAAGAAGGCAAAAG
AGTGGATGAAGCGCGGAAAGGAGGAAACTCCGTAAGGAAATCTTCAGAAA
GCAGCAACGCCAATCCCAGTAGCAGCAAGAGGAGCTCAATCAATCTGGAC
TTGAGTCGTATATGGGGACAGATTGAGGAGGAGATGCGGCGTTAGGAATG
TATATGTAAGTAGAAGGTAAGGAGGGAGGAAGGAAGGGAAGGAGGGCGAC
GGAGTCATTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACGATACTTTAATATAATTC
GAGGATAAGTGGAAGGAGTGGTGTGTTGATCGGTCAGGGTGTCTGTTTCT
GGTGAGTGAAGCGAAAAGCAACCTTCTTTGCGACAGGGCACGTCTTGTTA
TGAGCAGGCGGCAAACCCTTGCTCGCCCCTTGATCACCACGCATCTTTTT
TCCCCCACGTTCACACGGCAGTTGAGGACGATCGGATTCTTAGTCGAATC
TGAGTTTGGACTCCTGCTTTCGGGGCCGAGGGAGGAAGGAAGATACTTTG
TGTGGTGGAAGGGGGGAGGCCCAGGGATGTGTCCTTACTTGTGGTTGCGA
GAGAGGAAGTCAGAGAGGGCAATTTGAGTTTTCGGCTTGAAGCTTCGGCA
GGTGTAGGTCCGGATAATTAGCGCCCGCCACATTTTTGTGCTTGATTTAT
TAAATTTTATGTTGTTTGGTTTCGTTCTGCGTGCGTGTTCTTTGGTTTGA
TTTCAAGGAGGGAGGGTGACTTGAGAGAAAGCAGGGCTTAGCCGGCAGGA
AGTCTTGCATTCGGACTCACACACCCATACACTTACACCATTTCGGCTCT
CAGTTTGCAGAAATGCCCCTGGTGCTCAAATTCTACCGTCTACTTAAAGG
TACGCGAGGTTCAGTTGCGTCTTTTATCTTTTTTTCCTCCTCGAGAGAAT
GAGACATGACAAAAATGAATTTGAAAAAAAGACAGCGGTCTGTATGCGGC
AAAGGATGACAAAACAACTTTATCTACATTCTCCGACGCCTCCCTACCAT
CTTTTGGGAGATAAAGCGCATGGGGAGAAAGAGTCCCAACATTATGATGC
TAAGACATACACAATCACGAAAAAGGGGGGGGGGGGGCTTTTCCTTCCAC
TCCTTTTTGTGTAAAATTTCGCCGCACTAATGCAATACTTTTCCTTTCTC
CTGCACATTCTTTACCACACACACACAGTCTGCAGGGTGCCACCCTGCAA
TCCCTTCGTGCGAGAGGTAATATATATTTTTTTAATTTCCAAAACTTTTG
TCACCCCTCTTTTCGATTTGCGATTTGTATTACTTGATCATAAACGCGTG
AAGCGAAATAGAATATGATTTAGATGTTGCGGCGGTGGTGGCGACGGTGA
TAGTGAATGCAAGGATGCGAAATACACTGAATCCCAGAAGTAGATATCCA
AAGACACTGTTGGTCAAATCAAATAAACTGCTGAAGCACACACATTCACA
CACACCACCATCACCATAGCCAACACTTTCCTTTCCTCCATGCCTTCCCT
CCTGACATTTTATCTCATTCCTCGAATCTCTTTTTCACCACACATACACA
GGAAAATCAATACCTTTAGCACCGCTGCGGTGCCCGCGTGTGCCCTTCTC
CGAGGCCGACACACAAAAAAAAGGTAGATCTTCTCATTCATTCATTCTTA
TCCAACCATGATTTCCCCTTCTCTCCTTCTTCTACGGGAGCGAGAGCCAA
AACTTGTGATAAAACAAACGTAAGAAATTGATGAGAAAATGAGAATGGGC
ATGACGAGATGAGTTAGGATTCCCCTTCAGCAACACGCCCCCTTTTTATC
GATCGGGGGCGGTATGGTTGATGGATATCCATTGACCGACCCTTTTCTTA
CACACAGAAAAATTACAAAAAGGCTGTGGTGGCAGCTGCTGCTGCTGTAT
GCCTCAATGCAGCTGCTTGTCCCTTTGTTGAATGATAATGATGCTCATGT
GTCACAACACTCACACGACAGGGATGGCGACGACGACGCTGCGGAAGCTG
TTTTTGCACTTCATGAGGATAAAGGGTAAAAGAAGGTATGAATTTAGCTC
CTGATATTCGGCATATCTTTATTCAAGAGTTTTCCTTCTTTTCTCAGTTG
TTGGGGGAATTCTAGCTTGTATTCTTGGTCAATTGTAATAAAATCGAATG
GCAAGGAAAGGAAAAAGATGAAGAGATAGTTGGTTGATGACGGTTAACGA
CGCCTCAGTCGACTACCCCGATCTGCCGCGCGCATTTCTCGCGTTGCGGT
GGCCTGTGAGGGCCAAATTTTATAGTCATAGTTACTCTGACAGCTCTTCT
TCCTCTTTTGTTTCTTAATCCTCTCCAGTCTATCCTCTTGTCTAATTTCC
TCTTAAATTGCGACAGTCTCAGTGATCATTGCCATTACCTTCTTTCCTAC
ATATATCCACGCACACCCCCGAAAACAGGAGCGCTTCATAAAATAAGACA
ATACAAGCTGAGAGACTAGATTTTGATATGTATTGAACGTGTATGTGAGC
GTATGTGTACATGGCTCGAAGAGAAGGAGTAAATATTAAAGTGTGTGTGC
AAATCAGACCCTCCCTAAGAAATGAAACCAAAAAAGAAAGGCACCAGAAA
GCCACTCAAACATAAAAGTTTGATGGTCAATTTAAGACAAGCACAAAGGA
TGGATAAAGAAAAGGTAATTCTTGATGCAA

Coding sequence (CDS) from alignment at scaffold_4:490211..493840-

>mRNA_1981 ID=mRNA_1981|Name=jgi.p|Nanoce1779_2|578643|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_4:490211..493840- (Nannochloropsis oceanica)
ATGGCTTCGTCTCAATCAAGGGATGAAGAAGGGAGTGACGAGGATGTGGA
CGAGGAGGAGAGGGAGGATAAAAAGTGGGAGAGAAATGGACGTGACATTG
GGACGGAAGAGAAAGAAGGGGGTGAATCGCCGAAAGCGAGTACAAGAGGT
GTGCTTCGACCTACTGCTATTCGAGGCGGGATGGCTCAAGCACCCACAGT
GAGAGGCTCCCCAGGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTG
CAATATCGCATCACCTTATTGGACGACCGTTTCCCCACCATGCACCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCAAGCCGAAAGCAAGGAAAGCACC
GGACTTGCCCATCTTTCGCTCGTCCTTCTCTGCTCCCTCTGCTGCCGCAG
CTGGCGACGGGGTTCGAGGCTCCATGTCGTCCTCCTCTTCTTCCCTTTCG
TTGTCATCGTCGTCCGCCTCTGTCTCGTCCTCGTCTCGACGGCACCGACG
CAGAAAGCATCAGAATTACCCTTCCGGTGGATTAAGGCAGATATCTGATT
TCAATCGAGCACGGTGGGTGGCCATGATGGGGGAAGCTGGAGGAGGAGGA
GGTGTGGGGGAAGGAGGAGGAGGGGGGAAAGGAGGAGGAGGAAAAAGGAA
TAAGGAAGGAAAGCGTGGTAGGAAAGGGAAGATAGGAGGAGGAGAAAAGG
GAGAAGGAGGAGGAGAAGCAAGAGGAGTACCAAGAGGAGTAGCACGAGGA
GGAGCAGGAAGTGGTGGAGAGTCAGCGCTGTTGAGTGTGAAAAGGAAGGA
GGAAGATGAAGACACGAAAGAAGGCAAAAGAGTGGATGAAGCGCGGAAAG
GAGGAAACTCCGTAAGGAAATCTTCAGAAAGCAGCAACGCCAATCCCAGT
AGCAGCAAGAGGAGCTCAATCAATCTGGACTTGAGTCGTATATGGGGACA
GATTGAGGAGGAGATGCGGCGTTAG

Synonyms

Publications