jgi.p|Nanoce1779_2|576513, mRNA_198 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576513
Unique Name	mRNA_198
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1276
Alignment location	scaffold_3:493331..494813 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576599
Track	FilteredModels2
ProteinId	576513

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:493331..494813 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576513	gene_198	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576513	mRNA_198-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_198	CDS_198	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:493331..494813+
coding sequence from alignment at scaffold_3:493331..494813+

mRNA sequence

>mRNA_198 ID=mRNA_198|Name=jgi.p|Nanoce1779_2|576513|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp
CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG
CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC
AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC
AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC
TAGGGCGTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTG
ACGGGCAGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCC
AATCAACGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATT
AGGCTTGGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGT
CCATCTTTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAG
GGGCAGCCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTC
GCTGCAGCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTT
CCGAAGATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAG
CGATTGAGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGG
AAAAGGAAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGG
GACAAGAGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGC
GTCGAAGAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGA
GGAAGAGGAGGGTAGAAGCAGGAATGGCGGGCAGCATGAACAAGAAGAAG
GGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAACCGGCGAGGGGAGC
GGCAGCAGCAGCGATGATGACAACGATGACGAGGTGGAACTGAGGCTCTC
GATGGACAAAGTACGTACTTCCAAAAATCACGAAAGATTTCAAAGATCCC
AAATTGTCCATATTTGTACTTTTCACTCTTGGACATCACTCGAACAGGTG
GCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAGAGGAGGAGGAGGA
CGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAGGTCTTCCCATCAT
TAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGAAGTATTAAAAGGG
TAGTCTGTGTCTGAGTGGATTCGGGATGTGGGTGTAGTAAAAGAGACCAA
GAATAATGAAATCGACTTGCTAAGAA

protein sequence of jgi.p|Nanoce1779_2|576513

>mRNA_198-protein ID=mRNA_198-protein|Name=jgi.p|Nanoce1779_2|576513|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL
NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR
LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH
WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE
GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY
EEEEEEGRSRNGGQHEQEEGDGSISSAVNKRTGEGSGSSSDDDNDDEVEL
RLSMDKVRTSKNHERFQRSQIVHICTFHSWTSLEQVAIQAEAETIQEQEE
EEDVEDGVRDVALTQVFPSLVQQEDSVADDEEVLKG*

mRNA from alignment at scaffold_3:493331..494813+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_198 ID=mRNA_198|Name=jgi.p|Nanoce1779_2|576513|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp|location=Sequence derived from alignment at scaffold_3:493331..494813+ (Nannochloropsis oceanica)
CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG
CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC
AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC
AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC
TAGGGTACGTTTTCGTCAAGCAATGCAATTCTCCCTGACTTTCGTCGCCC
ATCACGAGTACGCTAACTCTAGGCACCCCCACCCCTCACGCCAAACAGGC
GTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTGACGGGC
AGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCCAATCAA
CGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATTAGGCTT
GGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGTCCATCT
TTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAGGGGCAG
CCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTCGCTGCA
GCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTTCCGAAG
ATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAGCGATTG
AGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGGAAAAGG
AAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGGGACAAG
AGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGCGTCGAA
GAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGAGGAAGA
GGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAACTGTAGGGGAATGG
TTGGAGGCAATGCATCTACTTCAATTGAGTCTTATGTAAAATGTAACGAT
GCAAACACCGCGCACATTGACACACCAGGAATGGCGGGCAGCATGAACAA
GAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAACCGGCGA
GGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGGAACTGA
GGCTCTCGATGGACAAAGTACGTACTTCCAAAAATCACGAAAGATTTCAA
AGATCCCAAATTGTCCATATTTGTACTTTTCACTCTTGGACATCACTCGA
ACAGGTGGCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAGAGGAGG
AGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAGGTCTTC
CCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGAAGTATT
AAAAGGGTAGTCTGTGTCTGAGTGGATTCGGGATGTGGGTGTAGTAAAAG
AGACCAAGAATAATGAAATCGACTTGCTAAGAA

Coding sequence (CDS) from alignment at scaffold_3:493331..494813+

>mRNA_198 ID=mRNA_198|Name=jgi.p|Nanoce1779_2|576513|organism=Nannochloropsis oceanica|type=CDS|length=3483bp|location=Sequence derived from alignment at scaffold_3:493331..494813+ (Nannochloropsis oceanica)
ATGACAAGCACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCC
GCAGCACCAGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGA
TGGAGGTCAAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTA
AACCACGCTAGGGCGTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAG
GTTTGGTGACGGGCAGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTC
TACACCCCAATCAACGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGA
CTCGCATTAGGCTTGGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCA
CAGCTTGTCCATCTTTCTACCGGAAGCTAATCTCGACGATGGTACAGCAG
TGGGGGAGGGGCAGCCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCAT
TGGAGGTCGCTGCAGCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGA
TACTGGTTCCGAAGATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGG
AAAAGAAGCGATTGAGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAG
GGGGATGGAAAAGGAAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGC
ACCTGGGGGACAAGAGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGA
AAAACGGCGTCGAAGAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTAT
GAAGAGGAGGAAGAGGAGGGTAGAAGCAGGAATGGCGGGCAGCATGAACA
AGAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAACCGGCG
AGGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGGAACTG
AGGCTCTCGATGGACAAAGTACGTACTTCCAAAAATCACGAAAGATTTCA
AAGATCCCAAATTGTCCATATTTGTACTTTTCACTCTTGGACATCACTCG
AACAGGTGGCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAGAGGAG
GAGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAGGTCTT
CCCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGAAGTAT
TAAAAGGGTAGATGACAAGCACTTCGCCTCAGAAGTGGGCCGAGGAGGAC
ATGCCCCCGCCGCAGCACCAGCAGCAGCAGCAGACCGGTGCGGGGCCGGA
CAAGGAAATGATGGAGGTCAAACAGCTTTTAAAGCAGGCATTGGGAGGGG
CGGGCATCCTAAACCACGCTAGGGCGTTGCTTGTCGCCGGGGTCCATTTG
GTCACGGATAGGTTTGGTGACGGGCAGCGACCCGAGGCCAGCCTCACGCA
TCTACGGCTTCTACACCCCAATCAACGCGCGATGGCCGCAGCAGAAACAG
AAGAAGGGCGACTCGCATTAGGCTTGGTCGCCGACTTGCTTGATAGTTTA
GGTTTAAGGCACAGCTTGTCCATCTTTCTACCGGAAGCTAATCTCGACGA
TGGTACAGCAGTGGGGGAGGGGCAGCCGCAGCAGCAGCAACAGCAGCATC
CGCCTTCGCATTGGAGGTCGCTGCAGCAAGCAGTCGTAGAAACGCTCGAG
TTGGATTCTGATACTGGTTCCGAAGATCCTCTCCTCTTACAATTCATGCG
CCGCCAGATGGAAAAGAAGCGATTGAGGAGTGAGTCGGAGGCGAAGGAGG
AGGGAGAAGAGGGGGATGGAAAAGGAAGGAAGGAGGAGGGAGAAGAAGAA
GCGATGCTGGCACCTGGGGGACAAGAGCAGGCTTTGGCCGCCAGGCAACA
AATGGTAGAGAAAAACGGCGTCGAAGAAATAACTGGAGCTGTGGAGGAGG
CAATTGCGTATGAAGAGGAGGAAGAGGAGGGTAGAAGCAGGAATGGCGGG
CAGCATGAACAAGAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAA
AAGAACCGGCGAGGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACG
AGGTGGAACTGAGGCTCTCGATGGACAAAGTACGTACTTCCAAAAATCAC
GAAAGATTTCAAAGATCCCAAATTGTCCATATTTGTACTTTTCACTCTTG
GACATCACTCGAACAGGTGGCCATTCAGGCCGAGGCAGAAACAATACAAG
AGCAAGAGGAGGAGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTA
ACCCAGGTCTTCCCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGA
TGAGGAAGTATTAAAAGGGTAGATGACAAGCACTTCGCCTCAGAAGTGGG
CCGAGGAGGACATGCCCCCGCCGCAGCACCAGCAGCAGCAGCAGACCGGT
GCGGGGCCGGACAAGGAAATGATGGAGGTCAAACAGCTTTTAAAGCAGGC
ATTGGGAGGGGCGGGCATCCTAAACCACGCTAGGGCGTTGCTTGTCGCCG
GGGTCCATTTGGTCACGGATAGGTTTGGTGACGGGCAGCGACCCGAGGCC
AGCCTCACGCATCTACGGCTTCTACACCCCAATCAACGCGCGATGGCCGC
AGCAGAAACAGAAGAAGGGCGACTCGCATTAGGCTTGGTCGCCGACTTGC
TTGATAGTTTAGGTTTAAGGCACAGCTTGTCCATCTTTCTACCGGAAGCT
AATCTCGACGATGGTACAGCAGTGGGGGAGGGGCAGCCGCAGCAGCAGCA
ACAGCAGCATCCGCCTTCGCATTGGAGGTCGCTGCAGCAAGCAGTCGTAG
AAACGCTCGAGTTGGATTCTGATACTGGTTCCGAAGATCCTCTCCTCTTA
CAATTCATGCGCCGCCAGATGGAAAAGAAGCGATTGAGGAGTGAGTCGGA
GGCGAAGGAGGAGGGAGAAGAGGGGGATGGAAAAGGAAGGAAGGAGGAGG
GAGAAGAAGAAGCGATGCTGGCACCTGGGGGACAAGAGCAGGCTTTGGCC
GCCAGGCAACAAATGGTAGAGAAAAACGGCGTCGAAGAAATAACTGGAGC
TGTGGAGGAGGCAATTGCGTATGAAGAGGAGGAAGAGGAGGGTAGAAGCA
GGAATGGCGGGCAGCATGAACAAGAAGAAGGGGATGGTAGTATTTCCTCG
GCTGTAAACAAAAGAACCGGCGAGGGGAGCGGCAGCAGCAGCGATGATGA
CAACGATGACGAGGTGGAACTGAGGCTCTCGATGGACAAAGTACGTACTT
CCAAAAATCACGAAAGATTTCAAAGATCCCAAATTGTCCATATTTGTACT
TTTCACTCTTGGACATCACTCGAACAGGTGGCCATTCAGGCCGAGGCAGA
AACAATACAAGAGCAAGAGGAGGAGGAGGACGTGGAGGATGGAGTCCGGG
ATGTCGCCTTAACCCAGGTCTTCCCATCATTAGTACAACAAGAAGACAGT
GTAGCGGATGATGAGGAAGTATTAAAAGGGTAG

Synonyms

Publications