jgi.p|Nanoce1779_2|578624, mRNA_1979 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578624
Unique Name	mRNA_1979
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1646
Alignment location	scaffold_4:483612..486448 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578710
Track	FilteredModels2
ProteinId	578624

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:483612..486448 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578624	gene_1979	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578624	mRNA_1979-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1979	CDS_1979	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:483612..486448+
coding sequence from alignment at scaffold_4:483612..486448+

mRNA sequence

>mRNA_1979 ID=mRNA_1979|Name=jgi.p|Nanoce1779_2|578624|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp
ACAGCAACAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAACAGC
AAAAGTGACAGCAGCGAAGAAGGGAAAGGCGTGTGGGGCAATTTCAGGTG
TCTGTTTGGAAGTGGAGGATTACATCCCTCCTCACTCAATGCTTGGGAAG
GAAGGGGGGGGGCTGGAAAGGCTGCTCTCATCGCCTTCTGCAGTAGCTAC
TCCTGGCAACGGTGGTGGGGCTGCTGCCGCTAGAGGAGGAGGGGAGAGAG
GGGATGGAGAAGGACCGCCTATTCCGCAGAGGTTTATTGATGGATGTTTG
GGGGATATGGTGGAGGCGAATCGAAGGTGGAATTTGACGTATGAATGGCG
GTACGATGAGAGGGAGGGAAGGGAGGAAGGGGAAAGGCGGGCATTTAATT
TGATCGCCAATCCACTCGCACCTTGTCGTGCATATCATTCTTCCCTCCCT
CTCTCCCTCTCTCCTTCCCTCTCTTCCTCCCTCCCTCCCTCCCTCTTTCC
CTTTCCCTCCCGTCCTTGGGCAGGACTTTGGCACCGACGAGATGTAGGAG
AAGCGTCGGTCGGACTCTCTATTGCTTTTGAATAAGGAGTGCTATCCATG
TGTATTGTGTCGGATTAGGCAGCTTCACGCCTCTACCTGCTGAAGCCACG
CATATGTCCGTTTCCTTACGTGTATCTTATTCCTCCCTCCGTCCCTTCCT
TCCCCCTGCCTTCAGGCGGGAGTTCGGCACGGACGAGATTTTGGACGAGC
CTCAGCCATTCTTCGATCTGATCAAGGAGTGCTATCCATCGTGGTACTGT
GGGCAAGGGAAGAGCGGTGACCCTGTATATTGGGAGAGATCCGGGCAAGT
CGACCAGCCGCGTATGAAGGTCGCGGGCTGTGGAATCGAGGAGCTGCTGC
GTCATTATGTGATGGTCACAGAGTTTTGCTGGGTGAAGCTTTATCCTGAC
GAGACCAAAAAGACGATCACAGTCTTCGATGTGGGCGGGGTGGGTATCCG
CGACCTGGCCGGCGATGCATTTGATTTCTTGCGGCGGTCCATCCATCTGA
TCTCGGAACACTACCCGGAGCGATCGCTGGTGATTATGATTGTTAATGCG
CCATCTTGGTTCGCCGTGCTCTGGAAAATGATACGGCCCATGGTCAATGA
GCGAACGCAGAAGAAGGTCAAGATCGTCAGCAAGAAAGAAACCTTGGAGT
GCTTGAAGGAATTCATCGAAGAGGCCGACATTCCCATTGAATATGGAGGC
AAGCTCCGCTTCGGGGAAGGAAAGGACACGGCCCGTTTCAAGAGTCCGCA
AGAGGTGGCGTTGCGAGAGCACGTGCTGGCAGTGAATAAGAGGCATAGGG
TGGAGATGGTTGTAGACGCCAAGACGAAGGCGAGGGATTTAGCTGTCTTA
AGAGGGGTAGACGGGTGAGGACTGGAGCAAGGGGGAATATAGTGCATGCA
CTTTATAGTACACAAGTTGTTCGACGAACTTGCAGAAAAGTACATATATT
ATGTGTGTATTGGGGAAGGTGTACGTGTGATGAAAGGCGGAAGAGCTGCT
GTAGGAGGGCGGGTGCAAGGGACGGGGAGAGACAGCGTGCGATGTCGGCC
TTGACAGGTTTTTCATCAGGCAAAGTCCCCGGACGGCCCAAACAGG

protein sequence of jgi.p|Nanoce1779_2|578624

>mRNA_1979-protein ID=mRNA_1979-protein|Name=jgi.p|Nanoce1779_2|578624|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MSVSLRVSYSSLRPFLPPAFRREFGTDEILDEPQPFFDLIKECYPSWYCG
QGKSGDPVYWERSGQVDQPRMKVAGCGIEELLRHYVMVTEFCWVKLYPDE
TKKTITVFDVGGVGIRDLAGDAFDFLRRSIHLISEHYPERSLVIMIVNAP
SWFAVLWKMIRPMVNERTQKKVKIVSKKETLECLKEFIEEADIPIEYGGK
LRFGEGKDTARFKSPQEVALREHVLAVNKRHRVEMVVDAKTKARDLAVLR
GVDG*

mRNA from alignment at scaffold_4:483612..486448+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1979 ID=mRNA_1979|Name=jgi.p|Nanoce1779_2|578624|organism=Nannochloropsis oceanica|type=mRNA|length=2837bp|location=Sequence derived from alignment at scaffold_4:483612..486448+ (Nannochloropsis oceanica)
ACAGCAACAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAACAGC
AAAAGTGACAGCAGCGAAGAAGGGAAAGGCGTGTGGGGCAATTTCAGGTG
TCTGTTTGGAAGTGGAGGATTACATCCCTCCTCACTCAATGCTTGGGAAG
GAAGGGGGGGGGCTGGAAAGGCTGCTCTCATCGCCTTCTGCAGTAGCTAC
TCCTGGCAACGGTGGTGGGGCTGCTGCCGCTAGAGGAGGAGGGGAGAGAG
GGGATGGAGAAGGACCGCCTATTCCGCAGAGGTTTATTGATGGATGTTTG
GGGGATATGGTGGAGGCGAATCGAAGGTGGAATTTGACGTATGAATGGCG
GTACGATGAGAGGGAGGGAAGGGAGGAAGGGGAAAGGCGGGCATTTAATT
TGATCGCCAATCCACTCGCACCTTGTCGTGCATATCATTCTTCCCTCCCT
CTCTCCCTCTCTCCTTCCCTCTCTTCCTCCCTCCCTCCCTCCCTCTTTCC
CTTTCCCTCCCGTCCTTGGGCAGGACTTTGGCACCGACGAGATGTAGGAG
AAGCGTCGGTCGGACTCTCTATTGCTTTTGAATAAGGAGTGCTATCCATG
TGTATTGTGTCGGATTAGGCAGCTTCACGCCTCTACCTGCTGAAGCCACG
CATATGTCCGTTTCCTTACGTGTATCTTATTCCTCCCTCCGTCCCTTCCT
TCCCCCTGCCTTCAGGCGGGAGTTCGGCACGGACGAGATTTTGGACGAGC
CTCAGCCATTCTTCGATCTGATCAAGGAGTGCTATCCATCGTGGTACTGT
GGGCAAGGGAAGAGCGGTGACCCTGTATATTGGGAGAGGTGAGTGTGTGC
AGGGGGGAGGCGGAAGAAGGGAGGGAGGGAGAAAGGAAAGAGCTGGTGTG
TGGATGTTGCCAGGGAGCGGCACCCGTCGGTGGTGGTATTGTGATGTCTT
TGGCCGCTTTACAGTGCTCGTATCGATCACCTCCTATCTTTTGCTATACC
TGCCGGCTTCTCCCTGTCCCTCCTTTTCACTTCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCGTCAGATCCGGGCAAGTCGACCAGCCGCGTATG
AAGGTCGCGGGCTGTGGAATCGAGGAGCTGCTGCGTCATTATGTGATGGT
CACAGAGTTTTGCTGGGTGAAGCTTTATCCTGACGAGGTGGGGATGGGAG
GAGGGAAGGAGGGAAGGAGGGAGGGAAGGCCATCCCGTGACGTGAATAGA
CTTGGATAGTGCATCGTGTTTATCACCTCTTTCTCCCTTCTTCCATCCAT
CCCTCCCTTCCCTCTTCCATCTTTTCGCTCTCCGTTTCTTGCACGTTTCC
TTCCTTCCGTTCCATCAAATACACGTTTCATCGTCACATCAAACACATGT
ATCACTGAACATCAGACCAAAAAGACGATCACAGTCTTCGATGTGGGCGG
GGTGGGTATCCGCGACCTGGCCGGCGATGCATTTGATTTCTTGCGGCGGT
CCATCCATCTGATCTCGGAACACTACCCGGAGCGATCGGTAAGTCAGGGA
GCGAGGGAGCGAGGGAGTGAGGGAGGGCTCGATCAGTGGTACATGCAGGC
AGACACGTACACACACGACGATTCAACACTTTACTCACTCACTCCTATCC
TTGCATTTTCGTCCCTCCCTCCCTCCCTCCTTCCTCTCTGTCGGCTGACC
GTACCTCCAGCTGGTGATTATGATTGTTAATGCGCCATCTTGGTTCGCCG
TGCTCTGGAAAATGATACGGCCCATGGTCAATGAGCGAACGCAGAAGAAG
GTCAAGATCGTCAGCAAGAAAGGTGCGGAGGTTTATGTGCATATGCTTGA
TTGATGAGTTGATTGATCGAGCGCTTGTGGCAAGGAGACTTTGAAAAAAT
GTATTTGTAAAGCCATGCGTAGTTACCACCACCCATTAACGTCTGTTGAA
TTCCCTTACTTACCTCCCCCTTTCCTTCCTTCCCTCCTTTATCTCTCCAT
CCTTTCCTCCTTCGAAGTTCCTTTTCTCACTTACTCCTTTTCTCGCTAAC
TCCTTCCCTCCTTCCCTCGTTTCTTTTGAACATAACAGAAACCTTGGAGT
GCTTGAAGGAATTCATCGAAGAGGCCGACATTCCCATTGAATATGGAGGC
AAGCTCCGCTTCGGGGAAGGAAAGGACACGGCCCGTTTCAAGAGTCCGCA
AGAGGTGGCGTTGCGAGAGCACGTGCTGGCAGTGAATAAGAGGCATAGGG
TGGAGATGGTTGTAGACGCCAAGACGAAGGCGAGGGATTTAGCTGTCTTA
AGAGGGGTAGACGGGTGAGGACTGGAGCAAGGGGGAATATAGTGCATGCA
CTTTATAGTACACAAGTTGTTCGACGAACTTGCAGAAAAGTACATATATT
ATGTGTGTATTGGGGAAGGTGTACGTGTGATGAAAGGCGGAAGAGCTGCT
GTAGGAGGGCGGGTGCAAGGGACGGGGAGAGACAGCGTGCGATGTGTGAG
TAGGGGAAGGTGGACAAAAGGAAACATAGGGGGGGGGAAAGGGATGGGAT
TCGATGAGTTTGATATCCTTTTGTCTCTGCTTCACCGCTCTTTGCGCAGA
TGTAGGTGGGTGTGTGTGTGTGGTGTGTGGTGGTCGACATCCGTTAGTTC
TTTTCCCCGTTATCCTACACTCCTATAGAACTATCGCATGCAACCTGACG
TCCTCCAGGACATGCATACGAGGGCAAGCTTTCCAACGATAAAATGTTGC
ATATACTTACCCCCATTCTTTTCCAACTTTTTCTAGCGGCCTTGACAGGT
TTTTCATCAGGCAAAGTCCCCGGACGGCCCAAACAGG

Coding sequence (CDS) from alignment at scaffold_4:483612..486448+

>mRNA_1979 ID=mRNA_1979|Name=jgi.p|Nanoce1779_2|578624|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_4:483612..486448+ (Nannochloropsis oceanica)
ATGTCCGTTTCCTTACGTGTATCTTATTCCTCCCTCCGTCCCTTCCTTCC
CCCTGCCTTCAGGCGGGAGTTCGGCACGGACGAGATTTTGGACGAGCCTC
AGCCATTCTTCGATCTGATCAAGGAGTGCTATCCATCGTGGTACTGTGGG
CAAGGGAAGAGCGGTGACCCTGTATATTGGGAGAGATCCGGGCAAGTCGA
CCAGCCGCGTATGAAGGTCGCGGGCTGTGGAATCGAGGAGCTGCTGCGTC
ATTATGTGATGGTCACAGAGTTTTGCTGGGTGAAGCTTTATCCTGACGAG
ACCAAAAAGACGATCACAGTCTTCGATGTGGGCGGGGTGGGTATCCGCGA
CCTGGCCGGCGATGCATTTGATTTCTTGCGGCGGTCCATCCATCTGATCT
CGGAACACTACCCGGAGCGATCGCTGGTGATTATGATTGTTAATGCGCCA
TCTTGGTTCGCCGTGCTCTGGAAAATGATACGGCCCATGGTCAATGAGCG
AACGCAGAAGAAGGTCAAGATCGTCAGCAAGAAAGAAACCTTGGAGTGCT
TGAAGGAATTCATCGAAGAGGCCGACATTCCCATTGAATATGGAGGCAAG
CTCCGCTTCGGGGAAGGAAAGGACACGGCCCGTTTCAAGAGTCCGCAAGA
GGTGGCGTTGCGAGAGCACGTGCTGGCAGTGAATAAGAGGCATAGGGTGG
AGATGGTTGTAGACGCCAAGACGAAGGCGAGGGATTTAGCTGTCTTAAGA
GGGGTAGACGGGTGAATGTCCGTTTCCTTACGTGTATCTTATTCCTCCCT
CCGTCCCTTCCTTCCCCCTGCCTTCAGGCGGGAGTTCGGCACGGACGAGA
TTTTGGACGAGCCTCAGCCATTCTTCGATCTGATCAAGGAGTGCTATCCA
TCGTGGTACTGTGGGCAAGGGAAGAGCGGTGACCCTGTATATTGGGAGAG
ATCCGGGCAAGTCGACCAGCCGCGTATGAAGGTCGCGGGCTGTGGAATCG
AGGAGCTGCTGCGTCATTATGTGATGGTCACAGAGTTTTGCTGGGTGAAG
CTTTATCCTGACGAGACCAAAAAGACGATCACAGTCTTCGATGTGGGCGG
GGTGGGTATCCGCGACCTGGCCGGCGATGCATTTGATTTCTTGCGGCGGT
CCATCCATCTGATCTCGGAACACTACCCGGAGCGATCGCTGGTGATTATG
ATTGTTAATGCGCCATCTTGGTTCGCCGTGCTCTGGAAAATGATACGGCC
CATGGTCAATGAGCGAACGCAGAAGAAGGTCAAGATCGTCAGCAAGAAAG
AAACCTTGGAGTGCTTGAAGGAATTCATCGAAGAGGCCGACATTCCCATT
GAATATGGAGGCAAGCTCCGCTTCGGGGAAGGAAAGGACACGGCCCGTTT
CAAGAGTCCGCAAGAGGTGGCGTTGCGAGAGCACGTGCTGGCAGTGAATA
AGAGGCATAGGGTGGAGATGGTTGTAGACGCCAAGACGAAGGCGAGGGAT
TTAGCTGTCTTAAGAGGGGTAGACGGGTGAATGTCCGTTTCCTTACGTGT
ATCTTATTCCTCCCTCCGTCCCTTCCTTCCCCCTGCCTTCAGGCGGGAGT
TCGGCACGGACGAGATTTTGGACGAGCCTCAGCCATTCTTCGATCTGATC
AAGGAGTGCTATCCATCGTGGTACTGTGGGCAAGGGAAGAGCGGTGACCC
TGTATATTGGGAGAGATCCGGGCAAGTCGACCAGCCGCGTATGAAGGTCG
CGGGCTGTGGAATCGAGGAGCTGCTGCGTCATTATGTGATGGTCACAGAG
TTTTGCTGGGTGAAGCTTTATCCTGACGAGACCAAAAAGACGATCACAGT
CTTCGATGTGGGCGGGGTGGGTATCCGCGACCTGGCCGGCGATGCATTTG
ATTTCTTGCGGCGGTCCATCCATCTGATCTCGGAACACTACCCGGAGCGA
TCGCTGGTGATTATGATTGTTAATGCGCCATCTTGGTTCGCCGTGCTCTG
GAAAATGATACGGCCCATGGTCAATGAGCGAACGCAGAAGAAGGTCAAGA
TCGTCAGCAAGAAAGAAACCTTGGAGTGCTTGAAGGAATTCATCGAAGAG
GCCGACATTCCCATTGAATATGGAGGCAAGCTCCGCTTCGGGGAAGGAAA
GGACACGGCCCGTTTCAAGAGTCCGCAAGAGGTGGCGTTGCGAGAGCACG
TGCTGGCAGTGAATAAGAGGCATAGGGTGGAGATGGTTGTAGACGCCAAG
ACGAAGGCGAGGGATTTAGCTGTCTTAAGAGGGGTAGACGGGTGAATGTC
CGTTTCCTTACGTGTATCTTATTCCTCCCTCCGTCCCTTCCTTCCCCCTG
CCTTCAGGCGGGAGTTCGGCACGGACGAGATTTTGGACGAGCCTCAGCCA
TTCTTCGATCTGATCAAGGAGTGCTATCCATCGTGGTACTGTGGGCAAGG
GAAGAGCGGTGACCCTGTATATTGGGAGAGATCCGGGCAAGTCGACCAGC
CGCGTATGAAGGTCGCGGGCTGTGGAATCGAGGAGCTGCTGCGTCATTAT
GTGATGGTCACAGAGTTTTGCTGGGTGAAGCTTTATCCTGACGAGACCAA
AAAGACGATCACAGTCTTCGATGTGGGCGGGGTGGGTATCCGCGACCTGG
CCGGCGATGCATTTGATTTCTTGCGGCGGTCCATCCATCTGATCTCGGAA
CACTACCCGGAGCGATCGCTGGTGATTATGATTGTTAATGCGCCATCTTG
GTTCGCCGTGCTCTGGAAAATGATACGGCCCATGGTCAATGAGCGAACGC
AGAAGAAGGTCAAGATCGTCAGCAAGAAAGAAACCTTGGAGTGCTTGAAG
GAATTCATCGAAGAGGCCGACATTCCCATTGAATATGGAGGCAAGCTCCG
CTTCGGGGAAGGAAAGGACACGGCCCGTTTCAAGAGTCCGCAAGAGGTGG
CGTTGCGAGAGCACGTGCTGGCAGTGAATAAGAGGCATAGGGTGGAGATG
GTTGTAGACGCCAAGACGAAGGCGAGGGATTTAGCTGTCTTAAGAGGGGT
AGACGGGTGAATGTCCGTTTCCTTACGTGTATCTTATTCCTCCCTCCGTC
CCTTCCTTCCCCCTGCCTTCAGGCGGGAGTTCGGCACGGACGAGATTTTG
GACGAGCCTCAGCCATTCTTCGATCTGATCAAGGAGTGCTATCCATCGTG
GTACTGTGGGCAAGGGAAGAGCGGTGACCCTGTATATTGGGAGAGATCCG
GGCAAGTCGACCAGCCGCGTATGAAGGTCGCGGGCTGTGGAATCGAGGAG
CTGCTGCGTCATTATGTGATGGTCACAGAGTTTTGCTGGGTGAAGCTTTA
TCCTGACGAGACCAAAAAGACGATCACAGTCTTCGATGTGGGCGGGGTGG
GTATCCGCGACCTGGCCGGCGATGCATTTGATTTCTTGCGGCGGTCCATC
CATCTGATCTCGGAACACTACCCGGAGCGATCGCTGGTGATTATGATTGT
TAATGCGCCATCTTGGTTCGCCGTGCTCTGGAAAATGATACGGCCCATGG
TCAATGAGCGAACGCAGAAGAAGGTCAAGATCGTCAGCAAGAAAGAAACC
TTGGAGTGCTTGAAGGAATTCATCGAAGAGGCCGACATTCCCATTGAATA
TGGAGGCAAGCTCCGCTTCGGGGAAGGAAAGGACACGGCCCGTTTCAAGA
GTCCGCAAGAGGTGGCGTTGCGAGAGCACGTGCTGGCAGTGAATAAGAGG
CATAGGGTGGAGATGGTTGTAGACGCCAAGACGAAGGCGAGGGATTTAGC
TGTCTTAAGAGGGGTAGACGGGTGA

Synonyms

Publications