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Properties
| Property Name | Value |
|---|
| TranscriptId | 628235 |
| Track | FilteredModels2 |
| ProteinId | 628149 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:481783..486373 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1978 ID=mRNA_1978|Name=jgi.p|Nanoce1779_2|628149|organism=Nannochloropsis oceanica|type=mRNA|length=4081bp
GGGTAAGTATATGCAACATTTTATCGTTGGAAAGCTTGCCCTCGTATGCA
TGTCCTGGAGGACGTCAGGTTGCATGCGATAGTTCTATAGGAGTGTAGGA
TAACGGGGAAAAGAACTAACGGATGTCGACCACCACACACCACACACACA
CACCCACCTACATCTGCGCAAAGAGCGGTGAAGCAGAGACAAAAGGATAT
CAAACTCATCGAATCCCATCCCTTTCCCCCCCCCTATGTTTCCTTTTGTC
CACCTTCCCCTACTCACACATCGCACGCTGTCTCTCCCCGTCCCTTGCAC
CCGCCCTCCTACAGCAGCTCTTCCGCCTTTCATCACACGTACACCTTCCC
CAATACACACATAATATATGTACTTTTCTGCAAGTTCGTCGAACAACTTG
TGTACTATAAAGTGCATGCACTATATTCCCCCTTGCTCCAGTCCTCACCC
GTCTACCCCTCTTAAGACAGCTAAATCCCTCGCCTTCGTCTTGGCGTCTA
CAACCATCTCCACCCTATGCCTCTTATTCACTGCCAGCACGTGCTCTCGC
AACGCCACCTCTTGCGGACTCTTGAAACGGGCCGTGTCCTTTCCTTCCCC
GAAGCGGAGCTTGCCTCCATATTCAATGGGAATGTCGGCCTCTTCGATGA
ATTCCTTCAAGCACTCCAAGGTTTCTGTTATGTTCAAAAGAAACGAGGGA
AGGAGGGAAGGAGTTAGCGAGAAAAGGAGTAAGTGAGAAAAGGAACTTCG
AAGGAGGAAAGGATGGAGAGATAAAGGAGGGAAGGAAGGAAAGGGGGAGG
TAAGTAAGGGAATTCAACAGACGTTAATGGGTGGTGGTAACTACGCATGG
CTTTACAAATACATTTTTTCAAAGTCTCCTTGCCACAAGCGCTCGATCAA
TCAACTCATCAATCAAGCATATGCACATAAACCTCCGCACCTTTCTTGCT
GACGATCTTGACCTTCTTCTGCGTTCGCTCATTGACCATGGGCCGTATCA
TTTTCCAGAGCACGGCGAACCAAGATGGCGCATTAACAATCATAATCACC
AGCTGGAGTGTTCCGAGATCAGATGGATGGACCGCCGCAAGAAATCAAAT
GCATCGCCGGCCAGGTCGCGGATACCCACCCCGCCCACATCGAAGACTGT
GATCGTCTTTTTGGTCTGATGTTCAGTGATACATGTGTTTGATGTGACGA
TGAAACGTGTATTTGATGGAACGGAAGGAAGGAAACGTGCAAGAAACGGA
GAGCGAAAAGATGGAAGAGGGAAGGGAGGGATGGATGGAAGAAGGGAGAA
AGAGGTGATAAACACGATGCACTATCCAAGTCTATTCACGTCACGGGATG
GCCTTCCCTCCCTCCTTCCCTCCTTCCCTCCTCCCATCCCCACCTCGTCA
GGATAAAGCTTCACCCAGCAAAACTCTGTGACCATCACATAATGACGCAG
CAGCTCCTCGATTCCACAGCCCGCGACCTTCATACGCGGCTGGTCGACTT
GCCCGGATCTCTCCCAATATACAGGGTCACCGCTCTTCCCTTGCCCACAG
TACCACGATGGATAGCACTCCTTGATCAGATCGAAGAATGGCTGAGGCTC
GTCCAAAATCTCGTCCGTGCCGAACTCCCGCCTGAAGGCAGGGGGAAGGA
AGGGACGGAGGGAGGAATAAGATACACGTAAGGAAACGGACATATGCGTG
GCTTCAGCAGGTAGAGGCGTGAAGCTGCCTAATCCGACACAATACACATG
GATAGCACTCCTTATTCAAAAGCAATAGAGAGTCCGACCGACGCTTCTCC
TACATCTCGTCGGTGCCAAAGTCCTGCCCAAGGACGGGAGGGAAAGGGAA
AGAGGGAGGGAGGGAGGGAGGAAGAGAGGGAAGGAGAGAGGGAGAGAGGG
AGGGAAGAATGATATGCACGACAAGGTGCGAGTGGATTGGCGATCAAATT
AAATGCCCGCCTTTCCCCTTCCTCCCTTCCCTCCCTCTCATCGTACCGCC
ATTCATACGTCAAATTCCACCTTCGATTCGCCTCCACCATATCCCCCAAA
CATCCATCAATAAACCTCTGCGGAATAGGCGGTCCTTCTCCATCCCCTCT
CTCCCCTCCTCCTCTAGCGGCAGCAGCCCCACCACCGTTGCCAGGAGTAG
CTACTGCAGAAGGCGATGAGAGCAGCCTTTCCAGCCCCCCCCCTTCCTTC
CCAAGCATTGAGTGAGGAGGGATGTAATCCTCCACTTCCAAACAGACACC
TGAAATTGCCCCACACGCCTTTCCCTTCTTCGCTGCTGTCACTTTTGCTG
TTGCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGTTGCTGTCCCT
TCGTCTTGCCTCGGGTTGAAGACGGTATTGAGGACTCGAAGGAGAAGGCC
CATCGCGACGGATAGCATGGCACATGTCTTCCGGTCTCGCAGGAGCTCGT
GGCTAGACAAGGGTGACGTATCCTCCGCGAGGAGGACGAGGAGGAGGAAG
ACCACACAGAGGAGAGGGATAGCTTGCTCCACCTCCAGCAACAGGGGCAA
CACAATCTGGGGCGACCACCAAGACAACGAGGAAGAAGCCGAAGATACTG
CGGTGGCTGCTGCTGCGGCCGCAGCCGCTGACGGCGACTCCCCTCCCACC
TCTTCCCCCTCTTTCCCTCCCTCCTCTATACTCGACACGGCCATCAAAGA
CGCACGTAGCACAAGCACCGCCCCTGCCATTCCAGCGCCGCTCCCTCCCC
TCACAGGCAGCCTCATCTTCCCCTCTCCCTTCTCACCGCGTTTCACTGCG
GCCAAAATCTCCTCCCCCTTCATCGTGACGGACGCTCCATTCACCAAAAA
TAATCGCACATCATCCTCCCCCCGCAGCGGCGGCATGGACAGGCCCTTCT
CGTACTCGACATGCCGGCTCACCACTACCTCCTTCCCTCCCTTCCTCCCG
CCCTCCTCTCCGTCTCCTCCCTTCCAGGTAGCATGGGTAAGAAGCAACAA
CCGAGGACGGACAATGCCCTCAGCCTCTCCTCCTTCCAGGGCGTGTATGA
ACGAGAGGCCCGAAAGAGTCTCACGTCGGTAAAGGAACCGGGAGCGGATC
GCGGTCCGAATGCAATGCACCCACTTGGAGGCCTCCTCGCTCGTGGGGGC
GAAAAAGACGCGCTTGCCCCCGTCGTCGAACGAAATGTAGAACGCCGTGT
CGTCGCCGGGGTGGAGATCGGCTTCAGTTATGTCGGAGAGGGTGGTCGAG
CCCCGTTCCTCTCCGAATAGGTCCACGCCTTTTTCGCGTTTGAACCTGTG
ATGGGTGGGGTGAGAGGGGACGCAGGAAAGCAGCAAGGACGCATCGGAGA
GAGCGGAGGAAACTCCCTCCCTCCGTCGCGCTCTCTCACCAATGCAACCC
TTGATGCGTGGCCACCAAGAAACGATTACGTTTCTTGGGAATGTACGCGT
TTGGATCCATTTTTTCGACGTAACCCGTCATGAGCACACCCTGTTGGTTT
TCGGTCGAGCGGTGTTTGGAAGGAGGGCCGTCAATGGTTATCCAAGAATA
TCCGCATACAGGACCACGACGACACCCCATTCTTCACTTCTGGAGACTCC
TTGATTCGGATATACCTGGCCATGGTACTTACCAATGCACACGCGGGTTT
GCGGAAGTAGGATGCGCGCTGGCTTCCCCCAAGGGACCTGGAGACGGACC
CGTCAATTGGCCCGACGGAGGCAGACATGGTCCTAAAGCACTGCGTAGGC
GATGCTGGCTTACGTTCCTTCTGCTCCTAACCCGTATTTATGCTGATAGC
TGTCCCACGCAAGGGCCTGTGGGGGTAGGTTTGTCGATGGTCGGGCGGTG
AATGCGTACAGGAATCTCTCTGGACTTGGAGCATGCCGAGAGACCTTGCG
TACACCCCAAGAAGACAAACGCCAGGATACAGAGGCCTGCCACCGCCTAG
ATTTAAATCATAACACTCTCGAGATATCTTCTTCCTGCCCTGTCGTGTGC
GGATGTGTGGCTTGTAGGGGTAAATGCAGAGCGTACCCAGAGGTTTGACT
CGGACATACTGGCGCATGCGGTTTGTTGGCG back to topprotein sequence of jgi.p|Nanoce1779_2|628149 >mRNA_1978-protein ID=mRNA_1978-protein|Name=jgi.p|Nanoce1779_2|628149|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MAHVFRSRRSSWLDKGDVSSARRTRRRKTTQRRGIACSTSSNRGNTIWGD
HQDNEEEAEDTAVAAAAAAAADGDSPPTSSPSFPPSSILDTAIKDARSTS
TAPAIPAPLPPLTGSLIFPSPFSPRFTAAKISSPFIVTDAPFTKNNRTSS
SPRSGGMDRPFSYSTCRLTTTSFPPFLPPSSPSPPFQVAWVRSNNRGRTM
PSASPPSRACMNERPERVSRR* back to topmRNA from alignment at scaffold_4:481783..486373- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1978 ID=mRNA_1978|Name=jgi.p|Nanoce1779_2|628149|organism=Nannochloropsis oceanica|type=mRNA|length=4591bp|location=Sequence derived from alignment at scaffold_4:481783..486373- (Nannochloropsis oceanica)
GGGTAAGTATATGCAACATTTTATCGTTGGAAAGCTTGCCCTCGTATGCA
TGTCCTGGAGGACGTCAGGTTGCATGCGATAGTTCTATAGGAGTGTAGGA
TAACGGGGAAAAGAACTAACGGATGTCGACCACCACACACCACACACACA
CACCCACCTACATCTGCGCAAAGAGCGGTGAAGCAGAGACAAAAGGATAT
CAAACTCATCGAATCCCATCCCTTTCCCCCCCCCTATGTTTCCTTTTGTC
CACCTTCCCCTACTCACACATCGCACGCTGTCTCTCCCCGTCCCTTGCAC
CCGCCCTCCTACAGCAGCTCTTCCGCCTTTCATCACACGTACACCTTCCC
CAATACACACATAATATATGTACTTTTCTGCAAGTTCGTCGAACAACTTG
TGTACTATAAAGTGCATGCACTATATTCCCCCTTGCTCCAGTCCTCACCC
GTCTACCCCTCTTAAGACAGCTAAATCCCTCGCCTTCGTCTTGGCGTCTA
CAACCATCTCCACCCTATGCCTCTTATTCACTGCCAGCACGTGCTCTCGC
AACGCCACCTCTTGCGGACTCTTGAAACGGGCCGTGTCCTTTCCTTCCCC
GAAGCGGAGCTTGCCTCCATATTCAATGGGAATGTCGGCCTCTTCGATGA
ATTCCTTCAAGCACTCCAAGGTTTCTGTTATGTTCAAAAGAAACGAGGGA
AGGAGGGAAGGAGTTAGCGAGAAAAGGAGTAAGTGAGAAAAGGAACTTCG
AAGGAGGAAAGGATGGAGAGATAAAGGAGGGAAGGAAGGAAAGGGGGAGG
TAAGTAAGGGAATTCAACAGACGTTAATGGGTGGTGGTAACTACGCATGG
CTTTACAAATACATTTTTTCAAAGTCTCCTTGCCACAAGCGCTCGATCAA
TCAACTCATCAATCAAGCATATGCACATAAACCTCCGCACCTTTCTTGCT
GACGATCTTGACCTTCTTCTGCGTTCGCTCATTGACCATGGGCCGTATCA
TTTTCCAGAGCACGGCGAACCAAGATGGCGCATTAACAATCATAATCACC
AGCTGGAGGTACGGTCAGCCGACAGAGAGGAAGGAGGGAGGGAGGGAGGG
ACGAAAATGCAAGGATAGGAGTGAGTGAGTAAAGTGTTGAATCGTCGTGT
GTGTACGTGTCTGCCTGCATGTACCACTGATCGAGCCCTCCCTCACTCCC
TCGCTCCCTCGCTCCCTGACTTACCGATCGCTCCGGGTAGTGTTCCGAGA
TCAGATGGATGGACCGCCGCAAGAAATCAAATGCATCGCCGGCCAGGTCG
CGGATACCCACCCCGCCCACATCGAAGACTGTGATCGTCTTTTTGGTCTG
ATGTTCAGTGATACATGTGTTTGATGTGACGATGAAACGTGTATTTGATG
GAACGGAAGGAAGGAAACGTGCAAGAAACGGAGAGCGAAAAGATGGAAGA
GGGAAGGGAGGGATGGATGGAAGAAGGGAGAAAGAGGTGATAAACACGAT
GCACTATCCAAGTCTATTCACGTCACGGGATGGCCTTCCCTCCCTCCTTC
CCTCCTTCCCTCCTCCCATCCCCACCTCGTCAGGATAAAGCTTCACCCAG
CAAAACTCTGTGACCATCACATAATGACGCAGCAGCTCCTCGATTCCACA
GCCCGCGACCTTCATACGCGGCTGGTCGACTTGCCCGGATCTGACGGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGTGAAAAGGAGGGACAGG
GAGAAGCCGGCAGGTATAGCAAAAGATAGGAGGTGATCGATACGAGCACT
GTAAAGCGGCCAAAGACATCACAATACCACCACCGACGGGTGCCGCTCCC
TGGCAACATCCACACACCAGCTCTTTCCTTTCTCCCTCCCTCCCTTCTTC
CGCCTCCCCCCTGCACACACTCACCTCTCCCAATATACAGGGTCACCGCT
CTTCCCTTGCCCACAGTACCACGATGGATAGCACTCCTTGATCAGATCGA
AGAATGGCTGAGGCTCGTCCAAAATCTCGTCCGTGCCGAACTCCCGCCTG
AAGGCAGGGGGAAGGAAGGGACGGAGGGAGGAATAAGATACACGTAAGGA
AACGGACATATGCGTGGCTTCAGCAGGTAGAGGCGTGAAGCTGCCTAATC
CGACACAATACACATGGATAGCACTCCTTATTCAAAAGCAATAGAGAGTC
CGACCGACGCTTCTCCTACATCTCGTCGGTGCCAAAGTCCTGCCCAAGGA
CGGGAGGGAAAGGGAAAGAGGGAGGGAGGGAGGGAGGAAGAGAGGGAAGG
AGAGAGGGAGAGAGGGAGGGAAGAATGATATGCACGACAAGGTGCGAGTG
GATTGGCGATCAAATTAAATGCCCGCCTTTCCCCTTCCTCCCTTCCCTCC
CTCTCATCGTACCGCCATTCATACGTCAAATTCCACCTTCGATTCGCCTC
CACCATATCCCCCAAACATCCATCAATAAACCTCTGCGGAATAGGCGGTC
CTTCTCCATCCCCTCTCTCCCCTCCTCCTCTAGCGGCAGCAGCCCCACCA
CCGTTGCCAGGAGTAGCTACTGCAGAAGGCGATGAGAGCAGCCTTTCCAG
CCCCCCCCCTTCCTTCCCAAGCATTGAGTGAGGAGGGATGTAATCCTCCA
CTTCCAAACAGACACCTGAAATTGCCCCACACGCCTTTCCCTTCTTCGCT
GCTGTCACTTTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGC
TGCTGTTGCTGTCCCTTCGTCTTGCCTCGGGTTGAAGACGGTATTGAGGA
CTCGAAGGAGAAGGCCCATCGCGACGGATAGCATGGCACATGTCTTCCGG
TCTCGCAGGAGCTCGTGGCTAGACAAGGGTGACGTATCCTCCGCGAGGAG
GACGAGGAGGAGGAAGACCACACAGAGGAGAGGGATAGCTTGCTCCACCT
CCAGCAACAGGGGCAACACAATCTGGGGCGACCACCAAGACAACGAGGAA
GAAGCCGAAGATACTGCGGTGGCTGCTGCTGCGGCCGCAGCCGCTGACGG
CGACTCCCCTCCCACCTCTTCCCCCTCTTTCCCTCCCTCCTCTATACTCG
ACACGGCCATCAAAGACGCACGTAGCACAAGCACCGCCCCTGCCATTCCA
GCGCCGCTCCCTCCCCTCACAGGCAGCCTCATCTTCCCCTCTCCCTTCTC
ACCGCGTTTCACTGCGGCCAAAATCTCCTCCCCCTTCATCGTGACGGACG
CTCCATTCACCAAAAATAATCGCACATCATCCTCCCCCCGCAGCGGCGGC
ATGGACAGGCCCTTCTCGTACTCGACATGCCGGCTCACCACTACCTCCTT
CCCTCCCTTCCTCCCGCCCTCCTCTCCGTCTCCTCCCTTCCAGGTAGCAT
GGGTAAGAAGCAACAACCGAGGACGGACAATGCCCTCAGCCTCTCCTCCT
TCCAGGGCGTGTATGAACGAGAGGCCCGAAAGAGTCTCACGTCGGTAAAG
GAACCGGGAGCGGATCGCGGTCCGAATGCAATGCACCCACTTGGAGGCCT
CCTCGCTCGTGGGGGCGAAAAAGACGCGCTTGCCCCCGTCGTCGAACGAA
ATGTAGAACGCCGTGTCGTCGCCGGGGTGGAGATCGGCTTCAGTTATGTC
GGAGAGGGTGGTCGAGCCCCGTTCCTCTCCGAATAGGTCCACGCCTTTTT
CGCGTTTGAACCTGTGATGGGTGGGGTGAGAGGGGACGCAGGAAAGCAGC
AAGGACGCATCGGAGAGAGCGGAGGAAAGTAAGTGTTTTGTTTTGTCATT
TTGGTGAGATCGGCTTTCTTCCGTGGTGTCAAATCCAAGTTCTTTCCACC
CATCCTCCCTCCCACACCCCAGCTCCCTCCCTCCGTCGCGCTCTCTCACC
AATGCAACCCTTGATGCGTGGCCACCAAGAAACGATTACGTTTCTTGGGA
ATGTACGCGTTTGGATCCATTTTTTCGACGTAACCCGTCATGAGCACACC
CTGTTGGTTTTCGGTCGAGCGGTGTTTGGAAGGAGGGCCGTCAATGGTTA
TCCAAGAATATCCGCATACAGGACCACGACGACACCCCATTCTTCACTTC
TGGAGACTCCTTGATTCGGATATACCTGGCCATGGTACTTACCAATGCAC
ACGCGGGTTTGCGGAAGTAGGATGCGCGCTGGCTTCCCCCAAGGGACCTG
GAGACGGACCCGTCAATTGGCCCGACGGAGGCAGACATGGTCCTAAAGCA
CTGCGTAGGCGATGCTGGCTTACGTTCCTTCTGCTCCTAACCCGTATTTA
TGCTGATAGCTGTCCCACGCAAGGGCCTGTGGGGGTAGGTTTGTCGATGG
TCGGGCGGTGAATGCGTACAGGAATCTCTCTGGACTTGGAGCATGCCGAG
AGACCTTGCGTACACCCCAAGAAGACAAACGCCAGGATACAGAGGCCTGC
CACCGCCTAGATTTAAATCATAACACTCTCGAGATATCTTCTTCCTGCCC
TGTCGTGTGCGGATGTGTGGCTTGTAGGGGTAAATGCAGAGCGTACCCAG
AGGTTTGACTCGGACATACTGGCGCATGCGGTTTGTTGGCG back to topCoding sequence (CDS) from alignment at scaffold_4:481783..486373- >mRNA_1978 ID=mRNA_1978|Name=jgi.p|Nanoce1779_2|628149|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_4:481783..486373- (Nannochloropsis oceanica)
ATGGCACATGTCTTCCGGTCTCGCAGGAGCTCGTGGCTAGACAAGGGTGA
CGTATCCTCCGCGAGGAGGACGAGGAGGAGGAAGACCACACAGAGGAGAG
GGATAGCTTGCTCCACCTCCAGCAACAGGGGCAACACAATCTGGGGCGAC
CACCAAGACAACGAGGAAGAAGCCGAAGATACTGCGGTGGCTGCTGCTGC
GGCCGCAGCCGCTGACGGCGACTCCCCTCCCACCTCTTCCCCCTCTTTCC
CTCCCTCCTCTATACTCGACACGGCCATCAAAGACGCACGTAGCACAAGC
ACCGCCCCTGCCATTCCAGCGCCGCTCCCTCCCCTCACAGGCAGCCTCAT
CTTCCCCTCTCCCTTCTCACCGCGTTTCACTGCGGCCAAAATCTCCTCCC
CCTTCATCGTGACGGACGCTCCATTCACCAAAAATAATCGCACATCATCC
TCCCCCCGCAGCGGCGGCATGGACAGGCCCTTCTCGTACTCGACATGCCG
GCTCACCACTACCTCCTTCCCTCCCTTCCTCCCGCCCTCCTCTCCGTCTC
CTCCCTTCCAGGTAGCATGGGTAAGAAGCAACAACCGAGGACGGACAATG
CCCTCAGCCTCTCCTCCTTCCAGGGCGTGTATGAACGAGAGGCCCGAAAG
AGTCTCACGTCGGTAA back to top
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