Properties
| Property Name | Value |
|---|
| TranscriptId | 578693 |
| Track | FilteredModels2 |
| ProteinId | 578607 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:479233..481719 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1977 ID=mRNA_1977|Name=jgi.p|Nanoce1779_2|578607|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
ACAGGGAATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGG
CCTTGCAAGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGT
GCGAGGACAGTTGAGGTGCGGCTACCCGAGGACCTGGAAAAGGATTTGGA
CGGGCTCATCATTCCTGGCGGCGAAAGTACCGCCATGGCTATCGTGGGAG
AGCGTCATGGTATCTTTCCCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAG
CCAGTGTGGGGGACATGTGCAGGCATGATCCTGTTATCGAACAAGGCGGT
GATGCAAAAAGATGGTGGACAACCTTTGATCGGTGGGTTGGACGTGGAAG
TGTGCCGAAATTATTTTGGGAGCCAGATCTCGAGCTTTGAAGTCGTATTA
GATTTGGAAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGGTCCGGT
TTCAGCAGTCTTCATTCGCGCGCCTGCCATTCTCGAGGCTGGTCCCAATG
TCCACGTCCTCGCGAGGGTCAAGGCCACCCCCTGTGCCAAGGCCAGGACC
TGTATCGAAGAGGTCTACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAACA
ATCGCAAAAGCAAAGAACGACGAGGATGACGAGGCAGGAGGATGGGAAGA
TGGAAGTGATGGTGGCCGTGCAGCAAGGCCAGCTACTCGCCACTGCCTTC
CATCCAGAGCTCACACCCGAGCGGTGGTGGCACCAATACTTTTTGTCCTT
ATGTCAGTAGCAGCTGCAGCAGTAGCAGCAGATGCAGACCTAGAAGGAGG
AGAAAGAGGAAGAGGGTGATGAGGAGGACGGATGAGGAGGTGGGGGAAGA
GGTCGTCAGCAGCAGCTGCAGCAGTAGCAGCAAGAGAAGGTGGAAAAACG
TGGAAAGGATCAATATGGACAGTAGGGATGACTGTGAAAGCCATAAGATA
TTTTGACAGTCAAAAAGGCACAATGAGACTGCCCAAAAGATTGAAGTGAG
AGGTGTGCATGTATTGTGTGTTGCTTTACACAGGATGCACGATTTTGATG
AGAACGAGAGCAGAGTAAAGAAGATAACAAAGAGGTCATACCCTAGACTA
CACCACATGTGCATGGGACCTTGAAATGACGGATAGAAAGAAGAAAAGAA
CAATCTGGTTATTGTGAGGAATCGAATCAAAATGTCATCACCGACCGCCC
TCTCTCCACCCTCCCCATCCATCCTCCCCCGCACAGGGGACATAAATCCA
TCGATCTCTCCTCCTCTCAACAAGAGAGCGTCAGCAGCCAGTGGCTAATT
TCCATCACAAAGGGGAAACCGCGGAGGTGAGCGGCCACGCACAACGCTAC
CTACTTGCTTCGATAAGACTTTGCGGCACCACACCAAAGAGAAGCAGGAG
ACTACCCCGCCTTCGGCATCATGAGCGAATACTGGAAATCAACGCCGAAA
TACTGCTGCAAATTTTGCAATGTCTGGATGGACGACAATACGACCTCCCG
TCGTCTGCACGATGGTGGAGCCAGGCATAAACAGGCAGTGGAGGATTTCT
TTAAGGCGAAGCGTGAGGCAAAACGGCAAGGCTCTCTCGATGACGGGGAG
GTAAGCAAAGAGCTGCGAGCCATCGAGAAGGCGGCCCAAGCACAAGCTGA
CCTGGATGCTGCCATGTTTGGCATTGGGGGAGGCATGCCTCCTCCTCCTC
CTCCTCCTGCTTCTCGCATTCCTCCTCCACCCCCACCACGTGAGAATCTG
TTGCGACCGCCACCGCCGCCACCCCCTCAA back to topprotein sequence of jgi.p|Nanoce1779_2|578607 >mRNA_1977-protein ID=mRNA_1977-protein|Name=jgi.p|Nanoce1779_2|578607|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MERVHPTAPCIGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGL
IIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQ
KDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSA
VFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVYQQQQQQQQQEQSQ
KQRTTRMTRQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSLCQ
* back to topmRNA from alignment at scaffold_4:479233..481719- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1977 ID=mRNA_1977|Name=jgi.p|Nanoce1779_2|578607|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at scaffold_4:479233..481719- (Nannochloropsis oceanica)
ACAGGGAATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGG
CCTTGCAAGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGT
GCGAGGACAGTTGAGGTGAGTGGTGACGCAGGAAAGGCAGGCACAAGGCC
CACATTGCTCTAGCTGGAGGTCGTAAGGTATCGCACGGACTGAAGAGGCT
GGCGGAGAGTTGTGCCATAGTGCTGTCTAGAGGCGGACGGGGGAGATGGG
CAGAACGATGGGCAGCTTTCTTATCCTCCCCCGCCATAAAACCGCCATGG
AACAAACCCATCTCGGCCCACTCACGCCTACCCCACCTATCCAATTCAAA
ATTACGCAGGTGCGGCTACCCGAGGACCTGGAAAAGGATTTGGACGGGCT
CATCATTCCTGGCGGCGAAAGTACCGCCATGGCTATCGTGGGAGAGCGTC
ATGGTATCTTTCCCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTG
TGGGGGACATGTGCAGGCATGATCCTGTTATCGAACAAGGCGGTGATGCA
AAAAGATGGTGGACAACCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCC
GAAATTATTTTGGGAGCCAGGTAATAAATGAGAGAGAAGGAGGAGATGGA
GGAGAGTGAGAACCTTGCAGGGTGACCTCTCGTTGGCCACATGAAGAAAC
AGAAGTGAAAAGCGCTGCGTCTCTGATTCTTACGCGTACATATATACACA
TACACGTGCAAATGTATATACATGAATATTATATACAAATATATGCGTCC
ACAGATCTCGAGCTTTGAAGTCGTATTAGATTTGGAAGGGGCCGCGGCCG
AGGGCAGTCTGGGCGCGGCCGGTCCGGTTTCAGCAGTCTTCATTCGCGCG
CCTGCCATTCTCGAGGTATGCTCAACGTCCATAGAGAGGAGTTAAAAAAT
AAACTGAAGGGATTATTGAAAATGCTGGCCGCATTCTACATCACTTCATT
CTCTTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGGT
CCCAATGTCCACGTCCTCGCGAGGGTCAAGGCCACCCCCTGTGCCAAGGC
CAGGACCTGTATCGAAGAGGTCTACCAGCAGCAGCAGCAGCAGCAGCAGC
AAGAACAATCGCAAAAGCAAAGAACGACGAGGATGACGAGGCAGGAGGAT
GGGAAGATGGAAGTGATGGTGGCCGTGCAGCAAGGCCAGCTACTCGCCAC
TGCCTTCCATCCAGAGCTCACACCCGAGCGGTGGTGGCACCAATACTTTT
TGTCCTTATGTCAGTAGCAGCTGCAGCAGTAGCAGCAGATGCAGACCTAG
AAGGAGGAGAAAGAGGAAGAGGGTGATGAGGAGGACGGATGAGGAGGTGG
GGGAAGAGGTCGTCAGCAGCAGCTGCAGCAGTAGCAGCAAGAGAAGGTGG
AAAAACGTGGAAAGGATCAATATGGACAGTAGGGATGACTGTGAAAGCCA
TAAGATATTTTGACAGTCAAAAAGGCACAATGAGACTGCCCAAAAGATTG
AAGTGAGAGGTGTGCATGTATTGTGTGTTGCTTTACACAGGATGCACGAT
TTTGATGAGAACGAGAGCAGAGTAAAGAAGATAACAAAGAGGTCATACCC
TAGACTACACCACATGTGCATGGGACCTTGAAATGACGGATAGAAAGAAG
AAAAGAACAATCTGGTTATTGTGAGGAATCGAATCAAAATGTCATCACCG
ACCGCCCTCTCTCCACCCTCCCCATCCATCCTCCCCCGCACAGGGGACAT
AAATCCATCGATCTCTCCTCCTCTCAACAAGAGAGCGTCAGCAGCCAGTG
GCTAATTTCCATCACAAAGGGGAAACCGCGGAGGTGAGCGGCCACGCACA
ACGCTACCTACTTGCTTCGATAAGACTTTGCGGCACCACACCAAAGAGAA
GCAGGAGACTACCCCGCCTTCGGCATCATGAGCGAATACTGGAAATCAAC
GGTACGTCCAAGGGAGTCTTGGGTGTGGACAAGCAAGCCGTCAGCCCCTT
TCGCCTTACTTCCCACCGCCCCTCTTGAATTTCTCTGCAAGCATAAAAGT
GGATAAACCCACACCTCACACCTCTCCATCCCCTCCCTCCATCCCTGCCA
GCCGAAATACTGCTGCAAATTTTGCAATGTCTGGATGGACGACAATACGA
CCTCCCGTCGTCTGCACGATGGTGGAGCCAGGCATAAACAGGCAGTGGAG
GATTTCTTTAAGGCGAAGCGTGAGGCAAAACGGCAAGGCTCTCTCGATGA
CGGGGAGGTAAGCAAAGAGCTGCGAGCCATCGAGAAGGCGGCCCAAGCAC
AAGCTGACCTGGATGCTGCCATGTTTGGCATTGGGGGAGGCATGCCTCCT
CCTCCTCCTCCTCCTGCTTCTCGCATTCCTCCTCCACCCCCACCACGTGA
GAATCTGTTGCGACCGCCACCGCCGCCACCCCCTCAA back to topCoding sequence (CDS) from alignment at scaffold_4:479233..481719- >mRNA_1977 ID=mRNA_1977|Name=jgi.p|Nanoce1779_2|578607|organism=Nannochloropsis oceanica|type=CDS|length=3012bp|location=Sequence derived from alignment at scaffold_4:479233..481719- (Nannochloropsis oceanica)
GCTGGTCCCAATGTCCACGTCCTCGCGAGGGTCAAGGCCACCCCCTGTGC
CAAGGCCAGGACCTGTATCGAAGAGGTCTACCAGCAGCAGCAGCAGCAGC
AGCAGCAAGAACAATCGCAAAAGCAAAGAACGACGAGGATGACGAGGCAG
GAGGATGGGAAGATGGAAGTGATGGTGGCCGTGCAGCAAGGCCAGCTACT
CGCCACTGCCTTCCATCCAGAGCTCACACCCGAGCGGTGGTGGCACCAAT
ACTTTTTGTCCTTATGTCAGTAGATCTCGAGCTTTGAAGTCGTATTAGAT
TTGGAAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGGTCCGGTTTC
AGCAGTCTTCATTCGCGCGCCTGCCATTCTCGAGGTGCGGCTACCCGAGG
ACCTGGAAAAGGATTTGGACGGGCTCATCATTCCTGGCGGCGAAAGTACC
GCCATGGCTATCGTGGGAGAGCGTCATGGTATCTTTCCCAAGCTTAAGGC
CTTCGTGCAAGGAGGCAAGCCAGTGTGGGGGACATGTGCAGGCATGATCC
TGTTATCGAACAAGGCGGTGATGCAAAAAGATGGTGGACAACCTTTGATC
GGTGGGTTGGACGTGGAAGTGTGCCGAAATTATTTTGGGAGCCAGATGGA
GAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCAAGGCG
CATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGACAGTT
GAGGCTGGTCCCAATGTCCACGTCCTCGCGAGGGTCAAGGCCACCCCCTG
TGCCAAGGCCAGGACCTGTATCGAAGAGGTCTACCAGCAGCAGCAGCAGC
AGCAGCAGCAAGAACAATCGCAAAAGCAAAGAACGACGAGGATGACGAGG
CAGGAGGATGGGAAGATGGAAGTGATGGTGGCCGTGCAGCAAGGCCAGCT
ACTCGCCACTGCCTTCCATCCAGAGCTCACACCCGAGCGGTGGTGGCACC
AATACTTTTTGTCCTTATGTCAGTAGATCTCGAGCTTTGAAGTCGTATTA
GATTTGGAAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGGTCCGGT
TTCAGCAGTCTTCATTCGCGCGCCTGCCATTCTCGAGGTGCGGCTACCCG
AGGACCTGGAAAAGGATTTGGACGGGCTCATCATTCCTGGCGGCGAAAGT
ACCGCCATGGCTATCGTGGGAGAGCGTCATGGTATCTTTCCCAAGCTTAA
GGCCTTCGTGCAAGGAGGCAAGCCAGTGTGGGGGACATGTGCAGGCATGA
TCCTGTTATCGAACAAGGCGGTGATGCAAAAAGATGGTGGACAACCTTTG
ATCGGTGGGTTGGACGTGGAAGTGTGCCGAAATTATTTTGGGAGCCAGAT
GGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCAAG
GCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGACA
GTTGAGGCTGGTCCCAATGTCCACGTCCTCGCGAGGGTCAAGGCCACCCC
CTGTGCCAAGGCCAGGACCTGTATCGAAGAGGTCTACCAGCAGCAGCAGC
AGCAGCAGCAGCAAGAACAATCGCAAAAGCAAAGAACGACGAGGATGACG
AGGCAGGAGGATGGGAAGATGGAAGTGATGGTGGCCGTGCAGCAAGGCCA
GCTACTCGCCACTGCCTTCCATCCAGAGCTCACACCCGAGCGGTGGTGGC
ACCAATACTTTTTGTCCTTATGTCAGTAGATCTCGAGCTTTGAAGTCGTA
TTAGATTTGGAAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGGTCC
GGTTTCAGCAGTCTTCATTCGCGCGCCTGCCATTCTCGAGGTGCGGCTAC
CCGAGGACCTGGAAAAGGATTTGGACGGGCTCATCATTCCTGGCGGCGAA
AGTACCGCCATGGCTATCGTGGGAGAGCGTCATGGTATCTTTCCCAAGCT
TAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGTGGGGGACATGTGCAGGCA
TGATCCTGTTATCGAACAAGGCGGTGATGCAAAAAGATGGTGGACAACCT
TTGATCGGTGGGTTGGACGTGGAAGTGTGCCGAAATTATTTTGGGAGCCA
GATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGC
AAGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGG
ACAGTTGAGGCTGGTCCCAATGTCCACGTCCTCGCGAGGGTCAAGGCCAC
CCCCTGTGCCAAGGCCAGGACCTGTATCGAAGAGGTCTACCAGCAGCAGC
AGCAGCAGCAGCAGCAAGAACAATCGCAAAAGCAAAGAACGACGAGGATG
ACGAGGCAGGAGGATGGGAAGATGGAAGTGATGGTGGCCGTGCAGCAAGG
CCAGCTACTCGCCACTGCCTTCCATCCAGAGCTCACACCCGAGCGGTGGT
GGCACCAATACTTTTTGTCCTTATGTCAGTAGATCTCGAGCTTTGAAGTC
GTATTAGATTTGGAAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGG
TCCGGTTTCAGCAGTCTTCATTCGCGCGCCTGCCATTCTCGAGGTGCGGC
TACCCGAGGACCTGGAAAAGGATTTGGACGGGCTCATCATTCCTGGCGGC
GAAAGTACCGCCATGGCTATCGTGGGAGAGCGTCATGGTATCTTTCCCAA
GCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGTGGGGGACATGTGCAG
GCATGATCCTGTTATCGAACAAGGCGGTGATGCAAAAAGATGGTGGACAA
CCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCCGAAATTATTTTGGGAG
CCAGATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCT
TGCAAGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCG
AGGACAGTTGAG back to top
|