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Properties
| Property Name | Value |
|---|
| TranscriptId | 628233 |
| Track | FilteredModels2 |
| ProteinId | 628147 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:478271..481807 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1976 ID=mRNA_1976|Name=jgi.p|Nanoce1779_2|628147|organism=Nannochloropsis oceanica|type=mRNA|length=3014bp
TACTGGCGCATGCGGTTTGTTGGCGAGCGACGAGAGATGATCGGGCGACC
TCTGCAATTGAGGTACAGCGCACATACGCACACGCATCACAGGGAATGGA
GAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCAAGGCG
CATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGACAGTT
GAGGTGCGGCTACCCGAGGACCTGGAAAAGGATTTGGACGGGCTCATCAT
TCCTGGCGGCGAAAGTACCGCCATGGCTATCGTGGGAGAGCGTCATGGTA
TCTTTCCCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGTGGGGG
ACATGTGCAGGCATGATCCTGTTATCGAACAAGGCGGTGATGCAAAAAGA
TGGTGGACAACCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCCGAAATT
ATTTTGGGAGCCAGGTAATAAATGAGAGAGAAGGAGGAGATGGAGGAGAG
TGAGAACCTTGCAGGGTGACCTCTCGTTGGCCACATGAAGAAACAGAAGT
GAAAAGCGCTGCGTCTCTGATTCTTACGCGTACATATATACACATACACG
TGCAAATGTATATACATGAATATTATATACAAATATATGCGTCCACAGAT
CTCGAGCTTTGAAGTCGTATTAGATTTGGAAGGGGCCGCGGCCGAGGGCA
GTCTGGGCGCGGCCGGTCCGGTTTCAGCAGTCTTCATTCGCGCGCCTGCC
ATTCTCGAGGCTGGTCCCAATGTCCACGTCCTCGCGAGGGTCAAGGCCAC
CCCCTGTGCCAAGGCCAGGACCTGTATCGAAGAGGTCTACCAGCAGCAGC
AGCAGCAGCAGCAGCAAGAACAATCGCAAAAGCAAAGAACGACGAGGATG
ACGAGGCAGGAGGATGGGAAGATGGAAGTGATGGTGGCCGTGCAGCAAGG
CCAGCTACTCGCCACTGCCTTCCATCCAGAGCTCACACCCGAGCGGTGGT
GGCACCAATACTTTTTGTCCTTATGTCAGTAGCAGCTGCAGCAGTAGCAG
CAGATGCAGACCTAGAAGGAGGAGAAAGAGGAAGAGGGTGATGAGGAGGA
CGGATGAGGAGGTGGGGGAAGAGGTCGTCAGCAGCAGCTGCAGCAGTAGC
AGCAAGAGAAGGTGGAAAAACGTGGAAAGGATCAATATGGACAGTAGGGA
TGACTGTGAAAGCCATAAGATATTTTGACAGTCAAAAAGGCACAATGAGA
CTGCCCAAAAGATTGAAGTGAGAGGTGTGCATGTATTGTGTGTTGCTTTA
CACAGGATGCACGATTTTGATGAGAACGAGAGCAGAGTAAAGAAGATAAC
AAAGAGGTCATACCCTAGACTACACCACATGTGCATGGGACCTTGAAATG
ACGGATAGAAAGAAGAAAAGAACAATCTGGTTATTGTGAGGAATCGAATC
AAAATGTCATCACCGACCGCCCTCTCTCCACCCTCCCCATCCATCCTCCC
CCGCACAGGGGACATAAATCCATCGATCTCTCCTCCTCTCAACAAGAGAG
CGTCAGCAGCCAGTGGCTAATTTCCATCACAAAGGGGAAACCGCGGAGGT
GAGCGGCCACGCACAACGCTACCTACTTGCTTCGATAAGACTTTGCGGCA
CCACACCAAAGAGAAGCAGGAGACTACCCCGCCTTCGGCATCATGAGCGA
ATACTGGAAATCAACGCCGAAATACTGCTGCAAATTTTGCAATGTCTGGA
TGGACGACAATACGACCTCCCGTCGTCTGCACGATGGTGGAGCCAGGCAT
AAACAGGCAGTGGAGGATTTCTTTAAGGCGAAGCGTGAGGCAAAACGGCA
AGGCTCTCTCGATGACGGGGAGGTAAGCAAAGAGCTGCGAGCCATCGAGA
AGGCGGCCCAAGCACAAGCTGACCTGGATGCTGCCATGTTTGGCATTGGG
GGAGGCATGCCTCCTCCTCCTCCTCCTCCTGCTTCTCGCATTCCTCCTCC
ACCCCCACCACGTGAGAATCTGTTGCGACCGCCACCGCCGCCACCCCCTC
AACGAAGGGAAGGGGAAGGGGGATATCGCAAGGACGAGGAAAGGGAGGAG
GAAGGGAAGGAGGGCGAGGAGGAGGCTGTGGAGCCAGAAGGGAGATATAG
TGTAGATGGGGTGTTCTACTTGGAAGGAAAACACTTTCCGGAGAAGCTGG
TGACGGGGACGAGGTGCGAGGTCTGGGCGGAGGGGGAGGATGAATGGAGG
GAGGGGAGGGTGGCGCGGGTACACGTGACGGCAGTCCCCAACACCACGCT
AGTCTTGCGAAAATTCGCAGTAGCCTTTGTGAAGAGGAAAATGGCTGAGG
AGGAGGAGGCAGCGGAGGAGAGAGGGAAGGAGAAAGAGGGGGCGGGGGGG
AAGGAGGGGGAGGAGGAAGAGATAGAAGAAGACATCACTCCTGATCGAAT
TCGCATGGTGGAGGCCCACCTCCTCGGCACCGTTCAACGTCCCCTTCCTT
CTCCTCCCCCTCCTCCTCCTATCAACATGGATACCGGGCTGGGGGGCTGG
CAGACTGTGTCAGTTCGTACGTTTGATGAGGAGGCAGAGAAAAAAGCGAG
CTTGAAGGCGATCAAAGCCGAGACAAAAAAGAGGAAGAAGGAAGATGCGG
AAAAACGTTCTAAAATGATCGAGGAAGCAATGGAAGGCGAGGATGCCCTC
TCTTCCTACGATCCTCACAACCGAGGGATGTACAAGGGAATTGACTTAAA
CGCGGCGGCAAGGGGGGAGGGAGGGAGAGAGGGAGAAGTGCTGCTTGGGG
AGGTGGGGGGAGCGACGGTGGACATCGATCTGGGGGGGGATAAAGACGGG
CCGGTGGCGTTCAAGAAGAAGAAAAAGGCGGGCGGGGAAGGAGCAGGTAC
AAAGTTTAGGAGGAGGAGGACGAGTGGTGATGACGATGACTAACGAAGAG
GAGAGAGTGACAATGAAGAGGCGTGGACCGGGGAAGGAAACAAAACAGAG
CTCATGCATAAGAC back to topprotein sequence of jgi.p|Nanoce1779_2|628147 >mRNA_1976-protein ID=mRNA_1976-protein|Name=jgi.p|Nanoce1779_2|628147|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSEYWKSTPKYCCKFCNVWMDDNTTSRRLHDGGARHKQAVEDFFKAKREA
KRQGSLDDGEVSKELRAIEKAAQAQADLDAAMFGIGGGMPPPPPPPASRI
PPPPPPRENLLRPPPPPPPQRREGEGGYRKDEEREEEGKEGEEEAVEPEG
RYSVDGVFYLEGKHFPEKLVTGTRCEVWAEGEDEWREGRVARVHVTAVPN
TTLVLRKFAVAFVKRKMAEEEEAAEERGKEKEGAGGKEGEEEEIEEDITP
DRIRMVEAHLLGTVQRPLPSPPPPPPINMDTGLGGWQTVSVRTFDEEAEK
KASLKAIKAETKKRKKEDAEKRSKMIEEAMEGEDALSSYDPHNRGMYKGI
DLNAAARGEGGREGEVLLGEVGGATVDIDLGGDKDGPVAFKKKKKAGGEG
AGTKFRRRRTSGDDDD* back to topmRNA from alignment at scaffold_4:478271..481807- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1976 ID=mRNA_1976|Name=jgi.p|Nanoce1779_2|628147|organism=Nannochloropsis oceanica|type=mRNA|length=3537bp|location=Sequence derived from alignment at scaffold_4:478271..481807- (Nannochloropsis oceanica)
TACTGGCGCATGCGGTTTGTTGGCGAGCGACGAGAGATGATCGGGCGACC
TCTGCAATTGAGGTACAGCGCACATACGCACACGCATCACAGGGAATGGA
GAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCAAGGCG
CATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGACAGTT
GAGGTGAGTGGTGACGCAGGAAAGGCAGGCACAAGGCCCACATTGCTCTA
GCTGGAGGTCGTAAGGTATCGCACGGACTGAAGAGGCTGGCGGAGAGTTG
TGCCATAGTGCTGTCTAGAGGCGGACGGGGGAGATGGGCAGAACGATGGG
CAGCTTTCTTATCCTCCCCCGCCATAAAACCGCCATGGAACAAACCCATC
TCGGCCCACTCACGCCTACCCCACCTATCCAATTCAAAATTACGCAGGTG
CGGCTACCCGAGGACCTGGAAAAGGATTTGGACGGGCTCATCATTCCTGG
CGGCGAAAGTACCGCCATGGCTATCGTGGGAGAGCGTCATGGTATCTTTC
CCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGTGGGGGACATGT
GCAGGCATGATCCTGTTATCGAACAAGGCGGTGATGCAAAAAGATGGTGG
ACAACCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCCGAAATTATTTTG
GGAGCCAGGTAATAAATGAGAGAGAAGGAGGAGATGGAGGAGAGTGAGAA
CCTTGCAGGGTGACCTCTCGTTGGCCACATGAAGAAACAGAAGTGAAAAG
CGCTGCGTCTCTGATTCTTACGCGTACATATATACACATACACGTGCAAA
TGTATATACATGAATATTATATACAAATATATGCGTCCACAGATCTCGAG
CTTTGAAGTCGTATTAGATTTGGAAGGGGCCGCGGCCGAGGGCAGTCTGG
GCGCGGCCGGTCCGGTTTCAGCAGTCTTCATTCGCGCGCCTGCCATTCTC
GAGGTATGCTCAACGTCCATAGAGAGGAGTTAAAAAATAAACTGAAGGGA
TTATTGAAAATGCTGGCCGCATTCTACATCACTTCATTCTCTTCCCTCCC
TCTCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGGTCCCAATGTCCAC
GTCCTCGCGAGGGTCAAGGCCACCCCCTGTGCCAAGGCCAGGACCTGTAT
CGAAGAGGTCTACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAATCGC
AAAAGCAAAGAACGACGAGGATGACGAGGCAGGAGGATGGGAAGATGGAA
GTGATGGTGGCCGTGCAGCAAGGCCAGCTACTCGCCACTGCCTTCCATCC
AGAGCTCACACCCGAGCGGTGGTGGCACCAATACTTTTTGTCCTTATGTC
AGTAGCAGCTGCAGCAGTAGCAGCAGATGCAGACCTAGAAGGAGGAGAAA
GAGGAAGAGGGTGATGAGGAGGACGGATGAGGAGGTGGGGGAAGAGGTCG
TCAGCAGCAGCTGCAGCAGTAGCAGCAAGAGAAGGTGGAAAAACGTGGAA
AGGATCAATATGGACAGTAGGGATGACTGTGAAAGCCATAAGATATTTTG
ACAGTCAAAAAGGCACAATGAGACTGCCCAAAAGATTGAAGTGAGAGGTG
TGCATGTATTGTGTGTTGCTTTACACAGGATGCACGATTTTGATGAGAAC
GAGAGCAGAGTAAAGAAGATAACAAAGAGGTCATACCCTAGACTACACCA
CATGTGCATGGGACCTTGAAATGACGGATAGAAAGAAGAAAAGAACAATC
TGGTTATTGTGAGGAATCGAATCAAAATGTCATCACCGACCGCCCTCTCT
CCACCCTCCCCATCCATCCTCCCCCGCACAGGGGACATAAATCCATCGAT
CTCTCCTCCTCTCAACAAGAGAGCGTCAGCAGCCAGTGGCTAATTTCCAT
CACAAAGGGGAAACCGCGGAGGTGAGCGGCCACGCACAACGCTACCTACT
TGCTTCGATAAGACTTTGCGGCACCACACCAAAGAGAAGCAGGAGACTAC
CCCGCCTTCGGCATCATGAGCGAATACTGGAAATCAACGGTACGTCCAAG
GGAGTCTTGGGTGTGGACAAGCAAGCCGTCAGCCCCTTTCGCCTTACTTC
CCACCGCCCCTCTTGAATTTCTCTGCAAGCATAAAAGTGGATAAACCCAC
ACCTCACACCTCTCCATCCCCTCCCTCCATCCCTGCCAGCCGAAATACTG
CTGCAAATTTTGCAATGTCTGGATGGACGACAATACGACCTCCCGTCGTC
TGCACGATGGTGGAGCCAGGCATAAACAGGCAGTGGAGGATTTCTTTAAG
GCGAAGCGTGAGGCAAAACGGCAAGGCTCTCTCGATGACGGGGAGGTAAG
CAAAGAGCTGCGAGCCATCGAGAAGGCGGCCCAAGCACAAGCTGACCTGG
ATGCTGCCATGTTTGGCATTGGGGGAGGCATGCCTCCTCCTCCTCCTCCT
CCTGCTTCTCGCATTCCTCCTCCACCCCCACCACGTGAGAATCTGTTGCG
ACCGCCACCGCCGCCACCCCCTCAACGAAGGGAAGGGGAAGGGGGATATC
GCAAGGACGAGGAAAGGGAGGAGGAAGGGAAGGAGGGCGAGGAGGAGGCT
GTGGAGCCAGAAGGGAGATATAGTGTAGATGGGGTGTTCTACTTGGAAGG
AAAACACTTTCCGGAGAAGCTGGTGACGGGGACGAGGTGCGAGGTCTGGG
CGGAGGGGGAGGATGAATGGAGGGAGGGGAGGGTGGCGCGGGTACACGTG
ACGGCAGTCCCCAACACCACGCTAGTCTTGCGAAAATTCGCAGTAGCCTT
TGTGAAGAGGAAAATGGCTGAGGAGGAGGAGGCAGCGGAGGAGAGAGGGA
AGGAGAAAGAGGGGGCGGGGGGGAAGGAGGGGGAGGAGGAAGAGATAGAA
GAAGACATCACTCCTGATCGAATTCGCATGGTGGAGGCCCACCTCCTCGG
CACCGTTCAACGTCCCCTTCCTTCTCCTCCCCCTCCTCCTCCTATCAACA
TGGATACCGGGCTGGGGGGCTGGCAGACTGTGTCAGTTCGTACGTTTGAT
GAGGAGGCAGAGAAAAAAGCGAGCTTGAAGGCGATCAAAGCCGAGACAAA
AAAGAGGAAGAAGGAAGATGCGGAAAAACGTTCTAAAATGATCGAGGAAG
CAATGGAAGGCGAGGATGCCCTCTCTTCCTACGATCCTCACAACCGAGGG
ATGTACAAGGGAATTGACTTAAACGCGGCGGCAAGGGGGGAGGGAGGGAG
AGAGGGAGAAGTGCTGCTTGGGGAGGTGGGGGGAGCGACGGTGGACATCG
ATCTGGGGGGGGATAAAGACGGGCCGGTGGCGTTCAAGAAGAAGAAAAAG
GCGGGCGGGGAAGGAGCAGGTACAAAGTTTAGGAGGAGGAGGACGAGTGG
TGATGACGATGACTAACGAAGAGGAGAGAGTGACAATGAAGAGGCGTGGA
CCGGGGAAGGAAACAAAACAGAGCTCATGCATAAGAC back to topCoding sequence (CDS) from alignment at scaffold_4:478271..481807- >mRNA_1976 ID=mRNA_1976|Name=jgi.p|Nanoce1779_2|628147|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_4:478271..481807- (Nannochloropsis oceanica)
CCGAAATACTGCTGCAAATTTTGCAATGTCTGGATGGACGACAATACGAC
CTCCCGTCGTCTGCACGATGGTGGAGCCAGGCATAAACAGGCAGTGGAGG
ATTTCTTTAAGGCGAAGCGTGAGGCAAAACGGCAAGGCTCTCTCGATGAC
GGGGAGGTAAGCAAAGAGCTGCGAGCCATCGAGAAGGCGGCCCAAGCACA
AGCTGACCTGGATGCTGCCATGTTTGGCATTGGGGGAGGCATGCCTCCTC
CTCCTCCTCCTCCTGCTTCTCGCATTCCTCCTCCACCCCCACCACGTGAG
AATCTGTTGCGACCGCCACCGCCGCCACCCCCTCAACGAAGGGAAGGGGA
AGGGGGATATCGCAAGGACGAGGAAAGGGAGGAGGAAGGGAAGGAGGGCG
AGGAGGAGGCTGTGGAGCCAGAAGGGAGATATAGTGTAGATGGGGTGTTC
TACTTGGAAGGAAAACACTTTCCGGAGAAGCTGGTGACGGGGACGAGGTG
CGAGGTCTGGGCGGAGGGGGAGGATGAATGGAGGGAGGGGAGGGTGGCGC
GGGTACACGTGACGGCAGTCCCCAACACCACGCTAGTCTTGCGAAAATTC
GCAGTAGCCTTTGTGAAGAGGAAAATGGCTGAGGAGGAGGAGGCAGCGGA
GGAGAGAGGGAAGGAGAAAGAGGGGGCGGGGGGGAAGGAGGGGGAGGAGG
AAGAGATAGAAGAAGACATCACTCCTGATCGAATTCGCATGGTGGAGGCC
CACCTCCTCGGCACCGTTCAACGTCCCCTTCCTTCTCCTCCCCCTCCTCC
TCCTATCAACATGGATACCGGGCTGGGGGGCTGGCAGACTGTGTCAGTTC
GTACGTTTGATGAGGAGGCAGAGAAAAAAGCGAGCTTGAAGGCGATCAAA
GCCGAGACAAAAAAGAGGAAGAAGGAAGATGCGGAAAAACGTTCTAAAAT
GATCGAGGAAGCAATGGAAGGCGAGGATGCCCTCTCTTCCTACGATCCTC
ACAACCGAGGGATGTACAAGGGAATTGACTTAAACGCGGCGGCAAGGGGG
GAGGGAGGGAGAGAGGGAGAAGTGCTGCTTGGGGAGGTGGGGGGAGCGAC
GGTGGACATCGATCTGGGGGGGGATAAAGACGGGCCGGTGGCGTTCAAGA
AGAAGAAAAAGGCGGGCGGGGAAGGAGCAGGTACAAAGTTTAGGAGGAGG
AGGACGAGTGGTGATGACGATGACTAAATGAGCGAATACTGGAAATCAAC
GCCGAAATACTGCTGCAAATTTTGCAATGTCTGGATGGACGACAATACGA
CCTCCCGTCGTCTGCACGATGGTGGAGCCAGGCATAAACAGGCAGTGGAG
GATTTCTTTAAGGCGAAGCGTGAGGCAAAACGGCAAGGCTCTCTCGATGA
CGGGGAGGTAAGCAAAGAGCTGCGAGCCATCGAGAAGGCGGCCCAAGCAC
AAGCTGACCTGGATGCTGCCATGTTTGGCATTGGGGGAGGCATGCCTCCT
CCTCCTCCTCCTCCTGCTTCTCGCATTCCTCCTCCACCCCCACCACGTGA
GAATCTGTTGCGACCGCCACCGCCGCCACCCCCTCAACGAAGGGAAGGGG
AAGGGGGATATCGCAAGGACGAGGAAAGGGAGGAGGAAGGGAAGGAGGGC
GAGGAGGAGGCTGTGGAGCCAGAAGGGAGATATAGTGTAGATGGGGTGTT
CTACTTGGAAGGAAAACACTTTCCGGAGAAGCTGGTGACGGGGACGAGGT
GCGAGGTCTGGGCGGAGGGGGAGGATGAATGGAGGGAGGGGAGGGTGGCG
CGGGTACACGTGACGGCAGTCCCCAACACCACGCTAGTCTTGCGAAAATT
CGCAGTAGCCTTTGTGAAGAGGAAAATGGCTGAGGAGGAGGAGGCAGCGG
AGGAGAGAGGGAAGGAGAAAGAGGGGGCGGGGGGGAAGGAGGGGGAGGAG
GAAGAGATAGAAGAAGACATCACTCCTGATCGAATTCGCATGGTGGAGGC
CCACCTCCTCGGCACCGTTCAACGTCCCCTTCCTTCTCCTCCCCCTCCTC
CTCCTATCAACATGGATACCGGGCTGGGGGGCTGGCAGACTGTGTCAGTT
CGTACGTTTGATGAGGAGGCAGAGAAAAAAGCGAGCTTGAAGGCGATCAA
AGCCGAGACAAAAAAGAGGAAGAAGGAAGATGCGGAAAAACGTTCTAAAA
TGATCGAGGAAGCAATGGAAGGCGAGGATGCCCTCTCTTCCTACGATCCT
CACAACCGAGGGATGTACAAGGGAATTGACTTAAACGCGGCGGCAAGGGG
GGAGGGAGGGAGAGAGGGAGAAGTGCTGCTTGGGGAGGTGGGGGGAGCGA
CGGTGGACATCGATCTGGGGGGGGATAAAGACGGGCCGGTGGCGTTCAAG
AAGAAGAAAAAGGCGGGCGGGGAAGGAGCAGGTACAAAGTTTAGGAGGAG
GAGGACGAGTGGTGATGACGATGACTAAATGAGCGAATACTGGAAATCAA
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