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Properties
| Property Name | Value |
|---|
| TranscriptId | 578682 |
| Track | FilteredModels2 |
| ProteinId | 578596 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:475742..476862 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1974 ID=mRNA_1974|Name=jgi.p|Nanoce1779_2|578596|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
CAGGCAAGCTCAGATGGCGATCGCACCAGCCTTCCCGTTCGATGAGGACC
TTGGCCTCCTCTTCCTGGCCTTGTCCACGCCCCATATTCTTTACTTCTTT
ACGTGGACCTGTACAGGCTCCTTTACCCGCGTCGCCAAGACCGTAGGCGT
AGAGGCCTTTACACTCTTCTACAAGCTGTCGGTGTTGATCAAGTTTGTGC
AGTTGGGGGCCCTCATCATGTGGGGCATGAAGAATCTCCCAACCTTCAAG
CTGGAAAGCATCACCCCCTTACAAGCGGTCGTGGGTACCATCATGTTCGC
TGCGGGCCAAGCTTTGAACATGGGGGTGTACAACGCCTTGGGGAAAGAAG
GAGTCTACTACGGAGTGCGATTGGGTAAGCCTATCGCGTGGTACGAGGGT
TTTCCCTTTACTGTTGTCCCTCACCCGCAGTATGTGGGCTGCGTGCTTTG
CATCTGGGGAGTGGTGGCCGTGTTACTGAGCCAGGCAAATGTGGATGCGG
GCTTATTGACGATTGCAACTGTCTGGAGCGGATTTTATGGCATCACTGGT
CTGATTGAGCATTATTTTTAGAGCTAGAAGAGTGCTGAGGAAAGCAAAGA
ACAAAAGAGACAAGCAAATTGGGGAGAGACTGGAAAAATAGCGCACGAAT
TGATAGTGGGGACGATGGGAGGACTGAAGAAAAAGGATGTGTGACTAGAA
TACATCAAGATGAGAGTAAAATAGTACCGGCAGCAACAGCGCCACTGAGG
GACAAACTGAAGAACGAACCTTTTATAAGTCGCGCGAAA back to topprotein sequence of jgi.p|Nanoce1779_2|578596 >mRNA_1974-protein ID=mRNA_1974-protein|Name=jgi.p|Nanoce1779_2|578596|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MAIAPAFPFDEDLGLLFLALSTPHILYFFTWTCTGSFTRVAKTVGVEAFT
LFYKLSVLIKFVQLGALIMWGMKNLPTFKLESITPLQAVVGTIMFAAGQA
LNMGVYNALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGV
VAVLLSQANVDAGLLTIATVWSGFYGITGLIEHYF* back to topmRNA from alignment at scaffold_4:475742..476862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1974 ID=mRNA_1974|Name=jgi.p|Nanoce1779_2|578596|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at scaffold_4:475742..476862- (Nannochloropsis oceanica)
CAGGCAAGCTCAGATGGCGATCGCACCAGCCTTCCCGTTCGATGAGGACC
TTGGCCTCCTCTTCCTGGCCTTGTCCACGCCCCATATTCTTTACTTCTTT
ACGTGGACCTGTACAGGCTCCTTTACCCGCGTCGCCAAGACCGTAGGCGT
AGAGGCCTTTACACTCTTCTACAAGGTGCGATTAGAGGGAGGGGAGGAGG
GGGAATGAAGGGGGTGGAGGGGAGGTATATGCCGTGCTTTTGGTCAGATG
TCAGGCTTTCTCTCTTATTCGGCATATTTCTCCCTATCTTTCCCTCTCTA
CATAGCTGTCGGTGTTGATCAAGTTTGTGCAGTTGGGGGCCCTCATCATG
TGGGGCATGAAGGTGCGGAGACGGGACATGCAGGGGGAGAGTGGGGAATG
AGATAAGCAGAGAGAGGGTGGGAGGTGAATAAAATTGACGCAAAACTCTG
TCGAATCTCTTAAAGCCACTTTATAACGCCTCGCCCTTCTTGTTTGTACA
TCCTCTCGAGCAAGACGGGCAATCAAACATTCGCGTAGCTCATTCCCCCA
CCACCAACCCTCAGAATCTCCCAACCTTCAAGCTGGAAAGCATCACCCCC
TTACAAGCGGTCGTGGGTACCATCATGTTCGCTGCGGGCCAAGCTTTGAA
CATGGGGGTGTACAACGCCTTGGGGAAAGAAGGAGTCTACTACGGAGTGC
GATTGGGTAAGCCTATCGCGTGGTACGAGGGTTTTCCCTTTACTGTTGTC
CCTCACCCGCAGTATGTGGGCTGCGTGCTTTGCATCTGGGGAGTGGTGGC
CGTGTTACTGAGCCAGGCAAATGTGGATGCGGGCTTATTGACGATTGCAA
CTGTCTGGAGCGGATTTTATGGCATCACTGGTCTGATTGAGCATTATTTT
TAGAGCTAGAAGAGTGCTGAGGAAAGCAAAGAACAAAAGAGACAAGCAAA
TTGGGGAGAGACTGGAAAAATAGCGCACGAATTGATAGTGGGGACGATGG
GAGGACTGAAGAAAAAGGATGTGTGACTAGAATACATCAAGATGAGAGTA
AAATAGTACCGGCAGCAACAGCGCCACTGAGGGACAAACTGAAGAACGAA
CCTTTTATAAGTCGCGCGAAA back to topCoding sequence (CDS) from alignment at scaffold_4:475742..476862- >mRNA_1974 ID=mRNA_1974|Name=jgi.p|Nanoce1779_2|578596|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_4:475742..476862- (Nannochloropsis oceanica)
AATCTCCCAACCTTCAAGCTGGAAAGCATCACCCCCTTACAAGCGGTCGT
GGGTACCATCATGTTCGCTGCGGGCCAAGCTTTGAACATGGGGGTGTACA
ACGCCTTGGGGAAAGAAGGAGTCTACTACGGAGTGCGATTGGGTAAGCCT
ATCGCGTGGTACGAGGGTTTTCCCTTTACTGTTGTCCCTCACCCGCAGTA
TGTGGGCTGCGTGCTTTGCATCTGGGGAGTGGTGGCCGTGTTACTGAGCC
AGGCAAATGTGGATGCGGGCTTATTGACGATTGCAACTGTCTGGAGCGGA
TTTTATGGCATCACTGGTCTGATTGAGCATTATTTTTAGCTGTCGGTGTT
GATCAAGTTTGTGCAGTTGGGGGCCCTCATCATGTGGGGCATGAAGATGG
CGATCGCACCAGCCTTCCCGTTCGATGAGGACCTTGGCCTCCTCTTCCTG
GCCTTGTCCACGCCCCATATTCTTTACTTCTTTACGTGGACCTGTACAGG
CTCCTTTACCCGCGTCGCCAAGACCGTAGGCGTAGAGGCCTTTACACTCT
TCTACAAGAATCTCCCAACCTTCAAGCTGGAAAGCATCACCCCCTTACAA
GCGGTCGTGGGTACCATCATGTTCGCTGCGGGCCAAGCTTTGAACATGGG
GGTGTACAACGCCTTGGGGAAAGAAGGAGTCTACTACGGAGTGCGATTGG
GTAAGCCTATCGCGTGGTACGAGGGTTTTCCCTTTACTGTTGTCCCTCAC
CCGCAGTATGTGGGCTGCGTGCTTTGCATCTGGGGAGTGGTGGCCGTGTT
ACTGAGCCAGGCAAATGTGGATGCGGGCTTATTGACGATTGCAACTGTCT
GGAGCGGATTTTATGGCATCACTGGTCTGATTGAGCATTATTTTTAGCTG
TCGGTGTTGATCAAGTTTGTGCAGTTGGGGGCCCTCATCATGTGGGGCAT
GAAGATGGCGATCGCACCAGCCTTCCCGTTCGATGAGGACCTTGGCCTCC
TCTTCCTGGCCTTGTCCACGCCCCATATTCTTTACTTCTTTACGTGGACC
TGTACAGGCTCCTTTACCCGCGTCGCCAAGACCGTAGGCGTAGAGGCCTT
TACACTCTTCTACAAGAATCTCCCAACCTTCAAGCTGGAAAGCATCACCC
CCTTACAAGCGGTCGTGGGTACCATCATGTTCGCTGCGGGCCAAGCTTTG
AACATGGGGGTGTACAACGCCTTGGGGAAAGAAGGAGTCTACTACGGAGT
GCGATTGGGTAAGCCTATCGCGTGGTACGAGGGTTTTCCCTTTACTGTTG
TCCCTCACCCGCAGTATGTGGGCTGCGTGCTTTGCATCTGGGGAGTGGTG
GCCGTGTTACTGAGCCAGGCAAATGTGGATGCGGGCTTATTGACGATTGC
AACTGTCTGGAGCGGATTTTATGGCATCACTGGTCTGATTGAGCATTATT
TTTAGCTGTCGGTGTTGATCAAGTTTGTGCAGTTGGGGGCCCTCATCATG
TGGGGCATGAAGATGGCGATCGCACCAGCCTTCCCGTTCGATGAGGACCT
TGGCCTCCTCTTCCTGGCCTTGTCCACGCCCCATATTCTTTACTTCTTTA
CGTGGACCTGTACAGGCTCCTTTACCCGCGTCGCCAAGACCGTAGGCGTA
GAGGCCTTTACACTCTTCTACAAG back to top
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