jgi.p|Nanoce1779_2|578572, mRNA_1970 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578572
Unique Name	mRNA_1970
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2497
Alignment location	scaffold_4:465376..467872 -

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Properties


Property Name	Value
TranscriptId	578658
Track	FilteredModels2
ProteinId	578572

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:465376..467872 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578572	gene_1970	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578572	mRNA_1970-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1970	CDS_1970	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:465376..467872-
coding sequence from alignment at scaffold_4:465376..467872-

mRNA sequence

>mRNA_1970 ID=mRNA_1970|Name=jgi.p|Nanoce1779_2|578572|organism=Nannochloropsis oceanica|type=mRNA|length=2497bp
ACAGTACACGTTGTTTGCCTCTTCGCGTGGACGCTAGACCTTTATCGCCC
AGATTGCTTCAAGCGCGCCATCAGCGATCAACATGGTCCTCTCCACTCTC
ATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCCGCCGGCCCCCTCTGTCCC
CTTCCCGAACCCAGCTCTTAAACATCTGCAGGCATTCTTCTCCACATGGA
CAGTTACGCGCGTGAATCCCGGCCGCTTCCTCCTTCCGAATCTGCTAATG
CCGGCGGGCACCTGGAGGATAGAGTTGACAGATCTCAACTTTGAAAACGA
GACAGGCGGCAGCCTTGACATGGACAGCAACAGTCACAGCAACAATAGCA
ACAGCAATTCTACCACCTGGTTGGTACACGCTTACGCCCCTTTTGATGCC
GACGCCCAGCGAACGAACGCCTTGATCGAAAAGCAATTGGGACCAATGCT
GGCGAAGCGGCAACAAGACCAGCAACATCAACAATCAGGTGCCCCGCATG
TGGTGCGCATAGGCAAGCTAGATGTCACCCAAAACCGACGGGCCGCTCAG
GAGCTACTCGACATGGACGAGGATGCGGGTGTGGGGTCCATATTAACTGT
CTTGCACCTCAATGTCGATGGGGATGGGAGTGGCAATGAGGAGCAGTATC
ATGGCCCCCGAACCCGGCAGGCATTGGAAGACCTTTTGGACCGTTTGCAC
GCTAATGGTGGTGAACTTTCGATCGCGGCCACGCCCACTCACCTGACATT
GCATGGAGAGATCCAATCGTTTTTGAAGGAGCATCCGTTGGCTTTTGTAT
TGGGAAGGGCGGAGGAGGGAGTAGTGACAGAGGAGGAGGCTATGTTTACA
GCCACGTGTGAAGCCCTGGGCTGGTATCATTGTGCGATAGTGCATTCCAA
GAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGCTGTGGGAATCGGTGAAAG
GTGGTCATAATGGTGCTGTTATTGCGAAGCTTGACCAGGGACGTGATGCT
CTCCCCTACCAACCCTCTGATGTCACGGCGGCCTCGCGTGGGCTGGAGGA
CTGGATGGTACAGCACGGCTTCTCGCTTGTCACCCACCTGGACATAGCAG
GGCCTCATGTGCAGCAATTTGTGTTCGGACCGAAGCAGCAGCAGCAAGAG
CAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGTGGTCCGCCCCTTCGAGGA
TTCAGTGGAGGAGGTGAAGAGTATGCTGGACAAGCTTCAGGACGCAGCTC
GAAGGCATCCAGAGACGAGGTTTGGCTATGTAACATCGACAGGAAGCAGG
GGATGGCCTGCTTTTGTCGCTGAGCATTTTGTGAGTGCGGAACAGGAAGG
AAGGGTGGAAGAGGTATCCACTTCGTCGGAGTGTCGCTTGTTCCTTTTGG
ATTGTGCAACGTATGCTTTGTATGAGGAGCCAGCAGGGGTGGCGAAGCTT
GACGTCTTATTAGATGGCGTTCAAGGAGAAACACTGCGCCCCCGTCTTCT
TTCTCTGAAATCTGTCGTCCAGGCAGAAAAGCGCGTGTTGTCTGAGGAGG
AAGTAGAGCAGCAGCAATTAGAGACAACAGCAGCAGTAGCTGGGGGAACG
GCAAGGCCAATAGACGAGGGTACACCAACGATGGCCCCAGAGGCGGTGCG
TCAGTTGGCGGTGGAGGGGCTCGCTGCTTTATGCATCGCGGCGGTGGCTG
TTACCTTGCTGCTGATGACGACGGCTGCTGGTAAGAAGAAAGAAACAGTA
GCATCAGCGGCAGCAGTAGGTAAGGAAGAGATCATTGTCGAGAAGAAGGA
GGTACATATGGAACAGGAGCAGGGGAAGCAGTACTCCTTGCCGACGGTTC
CGGCTTTTGGGGAGGAGGGAAATGAGAAGCCGCAACAGACAAGTAGGATG
ATGTTGATTTCTGAGTCGCTAGACTAAGCGAGAGAAAGAGGGTGAATATG
AGGAAGGGATGCATGAAGGGCAGATAAGCAGACAATTTGATTTCGTTCGG
CAGATACAGGCGTAAAAACAACACATCAGAGAAATTTCCCCTTGAAAAGA
AATAAAACTTTTAAAAAACAAGAAACAGAAACTTAGTGCTGTAGATTTTG
TGATAACCTCTTACCGCCTATCTGAGGAATACCTTGGGTTGCCTGCATGA
CAAAACAAAAAAGGGAGACAAGAGAGAGGCGAGTCATGAATTCGTGCATC
AAATGATCGCCTTCTCCCAACCCCTCACCACCAAAGGAAACTGTCCAGAG
GACCACATGAAAGATCCCCCTCTTTCCTCATTCTTTTCTCAACACGATGT
TGATTCTTCCATTCGCCTCCCCTTAGAACGGACCGTATGGCCCACTTAAC
CGTCCATCTCCTCCTTCTCCTTCTCCAATTCCTCCTCTTCCTCTTCCTCC
TTTGCTAGTGGAACATGCTACACCATGCATGCATGTTTTGGATACCGCTC
TTGCTGCCGGACACCCCCCACATGCACACACACACACACACACACAC

protein sequence of jgi.p|Nanoce1779_2|578572

>mRNA_1970-protein ID=mRNA_1970-protein|Name=jgi.p|Nanoce1779_2|578572|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MVLSTLILGAVVLVAWPPAPSVPFPNPALKHLQAFFSTWTVTRVNPGRFL
LPNLLMPAGTWRIELTDLNFENETGGSLDMDSNSHSNNSNSNSTTWLVHA
YAPFDADAQRTNALIEKQLGPMLAKRQQDQQHQQSGAPHVVRIGKLDVTQ
NRRAAQELLDMDEDAGVGSILTVLHLNVDGDGSGNEEQYHGPRTRQALED
LLDRLHANGGELSIAATPTHLTLHGEIQSFLKEHPLAFVLGRAEEGVVTE
EEAMFTATCEALGWYHCAIVHSKKALLRAAVASLWESVKGGHNGAVIAKL
DQGRDALPYQPSDVTAASRGLEDWMVQHGFSLVTHLDIAGPHVQQFVFGP
KQQQQEQQQQRQLVVAVVRPFEDSVEEVKSMLDKLQDAARRHPETRFGYV
TSTGSRGWPAFVAEHFVSAEQEGRVEEVSTSSECRLFLLDCATYALYEEP
AGVAKLDVLLDGVQGETLRPRLLSLKSVVQAEKRVLSEEEVEQQQLETTA
AVAGGTARPIDEGTPTMAPEAVRQLAVEGLAALCIAAVAVTLLLMTTAAG
KKKETVASAAAVGKEEIIVEKKEVHMEQEQGKQYSLPTVPAFGEEGNEKP
QQTSRMMLISESL

mRNA from alignment at scaffold_4:465376..467872-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1970 ID=mRNA_1970|Name=jgi.p|Nanoce1779_2|578572|organism=Nannochloropsis oceanica|type=mRNA|length=2497bp|location=Sequence derived from alignment at scaffold_4:465376..467872- (Nannochloropsis oceanica)
ACAGTACACGTTGTTTGCCTCTTCGCGTGGACGCTAGACCTTTATCGCCC
AGATTGCTTCAAGCGCGCCATCAGCGATCAACATGGTCCTCTCCACTCTC
ATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCCGCCGGCCCCCTCTGTCCC
CTTCCCGAACCCAGCTCTTAAACATCTGCAGGCATTCTTCTCCACATGGA
CAGTTACGCGCGTGAATCCCGGCCGCTTCCTCCTTCCGAATCTGCTAATG
CCGGCGGGCACCTGGAGGATAGAGTTGACAGATCTCAACTTTGAAAACGA
GACAGGCGGCAGCCTTGACATGGACAGCAACAGTCACAGCAACAATAGCA
ACAGCAATTCTACCACCTGGTTGGTACACGCTTACGCCCCTTTTGATGCC
GACGCCCAGCGAACGAACGCCTTGATCGAAAAGCAATTGGGACCAATGCT
GGCGAAGCGGCAACAAGACCAGCAACATCAACAATCAGGTGCCCCGCATG
TGGTGCGCATAGGCAAGCTAGATGTCACCCAAAACCGACGGGCCGCTCAG
GAGCTACTCGACATGGACGAGGATGCGGGTGTGGGGTCCATATTAACTGT
CTTGCACCTCAATGTCGATGGGGATGGGAGTGGCAATGAGGAGCAGTATC
ATGGCCCCCGAACCCGGCAGGCATTGGAAGACCTTTTGGACCGTTTGCAC
GCTAATGGTGGTGAACTTTCGATCGCGGCCACGCCCACTCACCTGACATT
GCATGGAGAGATCCAATCGTTTTTGAAGGAGCATCCGTTGGCTTTTGTAT
TGGGAAGGGCGGAGGAGGGAGTAGTGACAGAGGAGGAGGCTATGTTTACA
GCCACGTGTGAAGCCCTGGGCTGGTATCATTGTGCGATAGTGCATTCCAA
GAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGCTGTGGGAATCGGTGAAAG
GTGGTCATAATGGTGCTGTTATTGCGAAGCTTGACCAGGGACGTGATGCT
CTCCCCTACCAACCCTCTGATGTCACGGCGGCCTCGCGTGGGCTGGAGGA
CTGGATGGTACAGCACGGCTTCTCGCTTGTCACCCACCTGGACATAGCAG
GGCCTCATGTGCAGCAATTTGTGTTCGGACCGAAGCAGCAGCAGCAAGAG
CAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGTGGTCCGCCCCTTCGAGGA
TTCAGTGGAGGAGGTGAAGAGTATGCTGGACAAGCTTCAGGACGCAGCTC
GAAGGCATCCAGAGACGAGGTTTGGCTATGTAACATCGACAGGAAGCAGG
GGATGGCCTGCTTTTGTCGCTGAGCATTTTGTGAGTGCGGAACAGGAAGG
AAGGGTGGAAGAGGTATCCACTTCGTCGGAGTGTCGCTTGTTCCTTTTGG
ATTGTGCAACGTATGCTTTGTATGAGGAGCCAGCAGGGGTGGCGAAGCTT
GACGTCTTATTAGATGGCGTTCAAGGAGAAACACTGCGCCCCCGTCTTCT
TTCTCTGAAATCTGTCGTCCAGGCAGAAAAGCGCGTGTTGTCTGAGGAGG
AAGTAGAGCAGCAGCAATTAGAGACAACAGCAGCAGTAGCTGGGGGAACG
GCAAGGCCAATAGACGAGGGTACACCAACGATGGCCCCAGAGGCGGTGCG
TCAGTTGGCGGTGGAGGGGCTCGCTGCTTTATGCATCGCGGCGGTGGCTG
TTACCTTGCTGCTGATGACGACGGCTGCTGGTAAGAAGAAAGAAACAGTA
GCATCAGCGGCAGCAGTAGGTAAGGAAGAGATCATTGTCGAGAAGAAGGA
GGTACATATGGAACAGGAGCAGGGGAAGCAGTACTCCTTGCCGACGGTTC
CGGCTTTTGGGGAGGAGGGAAATGAGAAGCCGCAACAGACAAGTAGGATG
ATGTTGATTTCTGAGTCGCTAGACTAAGCGAGAGAAAGAGGGTGAATATG
AGGAAGGGATGCATGAAGGGCAGATAAGCAGACAATTTGATTTCGTTCGG
CAGATACAGGCGTAAAAACAACACATCAGAGAAATTTCCCCTTGAAAAGA
AATAAAACTTTTAAAAAACAAGAAACAGAAACTTAGTGCTGTAGATTTTG
TGATAACCTCTTACCGCCTATCTGAGGAATACCTTGGGTTGCCTGCATGA
CAAAACAAAAAAGGGAGACAAGAGAGAGGCGAGTCATGAATTCGTGCATC
AAATGATCGCCTTCTCCCAACCCCTCACCACCAAAGGAAACTGTCCAGAG
GACCACATGAAAGATCCCCCTCTTTCCTCATTCTTTTCTCAACACGATGT
TGATTCTTCCATTCGCCTCCCCTTAGAACGGACCGTATGGCCCACTTAAC
CGTCCATCTCCTCCTTCTCCTTCTCCAATTCCTCCTCTTCCTCTTCCTCC
TTTGCTAGTGGAACATGCTACACCATGCATGCATGTTTTGGATACCGCTC
TTGCTGCCGGACACCCCCCACATGCACACACACACACACACACACAC

Coding sequence (CDS) from alignment at scaffold_4:465376..467872-

>mRNA_1970 ID=mRNA_1970|Name=jgi.p|Nanoce1779_2|578572|organism=Nannochloropsis oceanica|type=CDS|length=1840bp|location=Sequence derived from alignment at scaffold_4:465376..467872- (Nannochloropsis oceanica)
ATGGTCCTCTCCACTCTCATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCC
GCCGGCCCCCTCTGTCCCCTTCCCGAACCCAGCTCTTAAACATCTGCAGG
CATTCTTCTCCACATGGACAGTTACGCGCGTGAATCCCGGCCGCTTCCTC
CTTCCGAATCTGCTAATGCCGGCGGGCACCTGGAGGATAGAGTTGACAGA
TCTCAACTTTGAAAACGAGACAGGCGGCAGCCTTGACATGGACAGCAACA
GTCACAGCAACAATAGCAACAGCAATTCTACCACCTGGTTGGTACACGCT
TACGCCCCTTTTGATGCCGACGCCCAGCGAACGAACGCCTTGATCGAAAA
GCAATTGGGACCAATGCTGGCGAAGCGGCAACAAGACCAGCAACATCAAC
AATCAGGTGCCCCGCATGTGGTGCGCATAGGCAAGCTAGATGTCACCCAA
AACCGACGGGCCGCTCAGGAGCTACTCGACATGGACGAGGATGCGGGTGT
GGGGTCCATATTAACTGTCTTGCACCTCAATGTCGATGGGGATGGGAGTG
GCAATGAGGAGCAGTATCATGGCCCCCGAACCCGGCAGGCATTGGAAGAC
CTTTTGGACCGTTTGCACGCTAATGGTGGTGAACTTTCGATCGCGGCCAC
GCCCACTCACCTGACATTGCATGGAGAGATCCAATCGTTTTTGAAGGAGC
ATCCGTTGGCTTTTGTATTGGGAAGGGCGGAGGAGGGAGTAGTGACAGAG
GAGGAGGCTATGTTTACAGCCACGTGTGAAGCCCTGGGCTGGTATCATTG
TGCGATAGTGCATTCCAAGAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGC
TGTGGGAATCGGTGAAAGGTGGTCATAATGGTGCTGTTATTGCGAAGCTT
GACCAGGGACGTGATGCTCTCCCCTACCAACCCTCTGATGTCACGGCGGC
CTCGCGTGGGCTGGAGGACTGGATGGTACAGCACGGCTTCTCGCTTGTCA
CCCACCTGGACATAGCAGGGCCTCATGTGCAGCAATTTGTGTTCGGACCG
AAGCAGCAGCAGCAAGAGCAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGT
GGTCCGCCCCTTCGAGGATTCAGTGGAGGAGGTGAAGAGTATGCTGGACA
AGCTTCAGGACGCAGCTCGAAGGCATCCAGAGACGAGGTTTGGCTATGTA
ACATCGACAGGAAGCAGGGGATGGCCTGCTTTTGTCGCTGAGCATTTTGT
GAGTGCGGAACAGGAAGGAAGGGTGGAAGAGGTATCCACTTCGTCGGAGT
GTCGCTTGTTCCTTTTGGATTGTGCAACGTATGCTTTGTATGAGGAGCCA
GCAGGGGTGGCGAAGCTTGACGTCTTATTAGATGGCGTTCAAGGAGAAAC
ACTGCGCCCCCGTCTTCTTTCTCTGAAATCTGTCGTCCAGGCAGAAAAGC
GCGTGTTGTCTGAGGAGGAAGTAGAGCAGCAGCAATTAGAGACAACAGCA
GCAGTAGCTGGGGGAACGGCAAGGCCAATAGACGAGGGTACACCAACGAT
GGCCCCAGAGGCGGTGCGTCAGTTGGCGGTGGAGGGGCTCGCTGCTTTAT
GCATCGCGGCGGTGGCTGTTACCTTGCTGCTGATGACGACGGCTGCTGGT
AAGAAGAAAGAAACAGTAGCATCAGCGGCAGCAGTAGGTAAGGAAGAGAT
CATTGTCGAGAAGAAGGAGGTACATATGGAACAGGAGCAGGGGAAGCAGT
ACTCCTTGCCGACGGTTCCGGCTTTTGGGGAGGAGGGAAATGAGAAGCCG
CAACAGACAAGTAGGATGATGTTGATTTCTGAGTCGCTAG

Synonyms

Publications