jgi.p|Nanoce1779_2|576510, mRNA_197 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576510
Unique NamemRNA_197
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1282
Alignment locationscaffold_3:491814..493095 -

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Properties
Property NameValue
TranscriptId576596
TrackFilteredModels2
ProteinId576510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:491814..493095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576510gene_197Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576510mRNA_197-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_197CDS_197Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_197 ID=mRNA_197|Name=jgi.p|Nanoce1779_2|576510|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
ACAGGCAGCACTTTTACAAGTGCACAAGGTAGACGCGCTAGATCCGACTC
GTTGGCTGGTCGCTTTTTCGTTAGTGATCCCGCCTCTGGACAACTATTGC
TGGCTAGCCTAGAGCGCGCGCGCACGCCGATACCATCAACATCCACCCCA
GCCACTCGCCCGCATCACATCGCATCATGTGCAGGTACTCACATTCCTCG
CAGCTGCTCGTGGTCGCACTGCTTGGGACGGCGCAACTTGCCGTCCACGG
GTTCCTCTTACTCAACAAGTCACCACTGGTACAAAATCAGGACGCCCGGT
GGCGACCCAGTCCCAGCAGCGACAGCCTCAGCACCCGCCCCACCACTGCT
ACCATGCACACGGAAGGGCGGATTTGGATGCAGTTCCCAACCTTGTCTGA
CACGCTGCGCGTGAGCAAGGGCCGCGAGGTGGTCATCGAGACGACTGCCA
CCGAGCATTTGGAAGAGGCCGAGATCGAAGTGGACGCTCACGCCTTTCAA
CTGCAACAAGAGCAACAGAGGATACGGGAAAAGTCCCAGGCTCAAGCGAG
AGAGTACAAGGTGGGCGTGATCGTCGTGGATCATGGATCGCGCCGCGCTG
AGGCCAATAATGCGTTGGCCGGCGTTGTGAATGATTTCCAGGCCCTGAGT
GGATATGAGCTGGTGGAGCCCGCCCACATGGAGCTAGCAGAGCCCTCCAT
TGCCACAGCTTTTGGTCGATGCGTGGAACGTGGGGCCACATTTATTATTT
GTCATCCGTTTTTTTTGTCGAGGGGGCGGCATGTGGCGGAAGATATCCCA
ACGTTGTTGGAAGAGGCGGCCTCAATTTTTCCTGGGGTGGAATGGGCTTT
GTCTCAGCCCCTGGGATCGCAGGCGGAGATTCCTCGGTTGATGCAAATGG
CGGTGGAGGATTGTGTGGTGGAGCAGAACATTAAGAGTGAGGACCATGCG
GACGGGTCGCCGTTGCCGGAGTTCAATATTTAGGAGGGAGGGATGTAGCG
ATGATTTGTTTCTGGCGTAATGGATGATTTTGATTTTGAAGGTGCGGAAA
GGAGTATATTTTTGTGGTAAGTGTTTTATATGTAGTTTATTTATGCTCTG
TGTTGCAGAAGCTAGCAAAACGAAGTTACCTTTTAGTTTTATGCTTGCGA
GGATTGGAGCGGGAGGGAGGGCGCGTCCCCTACCACTTAGCGTAGCACGA
AGGGGAATGACGAAAAAAAGAATGTAACGTGTATATAAACATTATAATAA
AGAAAAATGTCGCGGTCAATCCGTCCATTTAA
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protein sequence of jgi.p|Nanoce1779_2|576510

>mRNA_197-protein ID=mRNA_197-protein|Name=jgi.p|Nanoce1779_2|576510|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MCRYSHSSQLLVVALLGTAQLAVHGFLLLNKSPLVQNQDARWRPSPSSDS
LSTRPTTATMHTEGRIWMQFPTLSDTLRVSKGREVVIETTATEHLEEAEI
EVDAHAFQLQQEQQRIREKSQAQAREYKVGVIVVDHGSRRAEANNALAGV
VNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRG
RHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCVVEQ
NIKSEDHADGSPLPEFNI*
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mRNA from alignment at scaffold_3:491814..493095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_197 ID=mRNA_197|Name=jgi.p|Nanoce1779_2|576510|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp|location=Sequence derived from alignment at scaffold_3:491814..493095- (Nannochloropsis oceanica)
ACAGGCAGCACTTTTACAAGTGCACAAGGTAGACGCGCTAGATCCGACTC
GTTGGCTGGTCGCTTTTTCGTTAGTGATCCCGCCTCTGGACAACTATTGC
TGGCTAGCCTAGAGCGCGCGCGCACGCCGATACCATCAACATCCACCCCA
GCCACTCGCCCGCATCACATCGCATCATGTGCAGGTACTCACATTCCTCG
CAGCTGCTCGTGGTCGCACTGCTTGGGACGGCGCAACTTGCCGTCCACGG
GTTCCTCTTACTCAACAAGTCACCACTGGTACAAAATCAGGACGCCCGGT
GGCGACCCAGTCCCAGCAGCGACAGCCTCAGCACCCGCCCCACCACTGCT
ACCATGCACACGGAAGGGCGGATTTGGATGCAGTTCCCAACCTTGTCTGA
CACGCTGCGCGTGAGCAAGGGCCGCGAGGTGGTCATCGAGACGACTGCCA
CCGAGCATTTGGAAGAGGCCGAGATCGAAGTGGACGCTCACGCCTTTCAA
CTGCAACAAGAGCAACAGAGGATACGGGAAAAGTCCCAGGCTCAAGCGAG
AGAGTACAAGGTGGGCGTGATCGTCGTGGATCATGGATCGCGCCGCGCTG
AGGCCAATAATGCGTTGGCCGGCGTTGTGAATGATTTCCAGGCCCTGAGT
GGATATGAGCTGGTGGAGCCCGCCCACATGGAGCTAGCAGAGCCCTCCAT
TGCCACAGCTTTTGGTCGATGCGTGGAACGTGGGGCCACATTTATTATTT
GTCATCCGTTTTTTTTGTCGAGGGGGCGGCATGTGGCGGAAGATATCCCA
ACGTTGTTGGAAGAGGCGGCCTCAATTTTTCCTGGGGTGGAATGGGCTTT
GTCTCAGCCCCTGGGATCGCAGGCGGAGATTCCTCGGTTGATGCAAATGG
CGGTGGAGGATTGTGTGGTGGAGCAGAACATTAAGAGTGAGGACCATGCG
GACGGGTCGCCGTTGCCGGAGTTCAATATTTAGGAGGGAGGGATGTAGCG
ATGATTTGTTTCTGGCGTAATGGATGATTTTGATTTTGAAGGTGCGGAAA
GGAGTATATTTTTGTGGTAAGTGTTTTATATGTAGTTTATTTATGCTCTG
TGTTGCAGAAGCTAGCAAAACGAAGTTACCTTTTAGTTTTATGCTTGCGA
GGATTGGAGCGGGAGGGAGGGCGCGTCCCCTACCACTTAGCGTAGCACGA
AGGGGAATGACGAAAAAAAGAATGTAACGTGTATATAAACATTATAATAA
AGAAAAATGTCGCGGTCAATCCGTCCATTTAA
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Coding sequence (CDS) from alignment at scaffold_3:491814..493095-

>mRNA_197 ID=mRNA_197|Name=jgi.p|Nanoce1779_2|576510|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_3:491814..493095- (Nannochloropsis oceanica)
ATGTGCAGGTACTCACATTCCTCGCAGCTGCTCGTGGTCGCACTGCTTGG
GACGGCGCAACTTGCCGTCCACGGGTTCCTCTTACTCAACAAGTCACCAC
TGGTACAAAATCAGGACGCCCGGTGGCGACCCAGTCCCAGCAGCGACAGC
CTCAGCACCCGCCCCACCACTGCTACCATGCACACGGAAGGGCGGATTTG
GATGCAGTTCCCAACCTTGTCTGACACGCTGCGCGTGAGCAAGGGCCGCG
AGGTGGTCATCGAGACGACTGCCACCGAGCATTTGGAAGAGGCCGAGATC
GAAGTGGACGCTCACGCCTTTCAACTGCAACAAGAGCAACAGAGGATACG
GGAAAAGTCCCAGGCTCAAGCGAGAGAGTACAAGGTGGGCGTGATCGTCG
TGGATCATGGATCGCGCCGCGCTGAGGCCAATAATGCGTTGGCCGGCGTT
GTGAATGATTTCCAGGCCCTGAGTGGATATGAGCTGGTGGAGCCCGCCCA
CATGGAGCTAGCAGAGCCCTCCATTGCCACAGCTTTTGGTCGATGCGTGG
AACGTGGGGCCACATTTATTATTTGTCATCCGTTTTTTTTGTCGAGGGGG
CGGCATGTGGCGGAAGATATCCCAACGTTGTTGGAAGAGGCGGCCTCAAT
TTTTCCTGGGGTGGAATGGGCTTTGTCTCAGCCCCTGGGATCGCAGGCGG
AGATTCCTCGGTTGATGCAAATGGCGGTGGAGGATTGTGTGGTGGAGCAG
AACATTAAGAGTGAGGACCATGCGGACGGGTCGCCGTTGCCGGAGTTCAA
TATTTAG
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Synonyms
Publications