jgi.p|Nanoce1779_2|578567, mRNA_1969 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578567
Unique Name	mRNA_1969
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1717
Alignment location	scaffold_4:463467..465429 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578653
Track	FilteredModels2
ProteinId	578567

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:463467..465429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578567	gene_1969	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578567	mRNA_1969-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1969	CDS_1969	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:463467..465429+
coding sequence from alignment at scaffold_4:463467..465429+

mRNA sequence

>mRNA_1969 ID=mRNA_1969|Name=jgi.p|Nanoce1779_2|578567|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp
ACAGTTGCCCCACAGCCTCTCGAAGCTACCATGCTGACCCTAACAGCCCG
GAAGGCTGCTGCCTCTACCGCACGCCTCTCCGGTGCGCGTGCTGCCTCGA
CCATCACGGCGATCAAAGGCCGCCAGATTATTGACTCCCGGGGCAACCCT
ACCGTGGAGGTGGACCTGTTCACCAAGGATGGCAAGTTCACCGCCTCTGT
GCCGTCGGGCGCCTCTACAGGCATCTACGAGGCCATGGAACTCCGTGACG
GGGGAAAGGCTTTTATGGGCAAGGGTGTTACAAAGGCCGTCGGTAATGTG
AATACAGCCATTGCGAAATGCTTGGCCGGGCAGGATGTGACCAAGCAAGC
TACGCTCGACAAGATGATGATTGAGTTGGACGGTTCCGAGAACAAAAGCA
AGCTGGGCGCAAACGCCATCCTGGGTGTCTCCCTGGCTGCAGCCAAGGCC
GGTGCCGCCGCCAAGAAGGTGCCTCTTTACAAGCACTTTGGGGACTTGGC
GGGTAACAGCAACTTTGTCCTGCCCGTGCCTTCCTTCAATGTGATCAATG
GTGGCAGCCACGCCGGGAACAAGCTGGCGTTTCAGGAATTCATGATCTTG
CCCACGGGGGCGTCGACCTTCTCAGAGGCAATGGCGATTGGCTGCGAAGT
GTACCATCATCTAGCGAAGGTCATCAAGGCCAAGTACGGGCAGGATGCCG
TGAATGTGGGGGATGAGGGAGGGTTTGCGCCCAACATCCAGAGCAACACG
GAAGGTGTCGAGCTCCTCATGTCTGCAATTGACAAGGCCGGGTACCTCGA
TAAGGTCAAGATTGGTATGGATGTGGCGTCTTCAGAGTTTTTGACGAAGG
ACGGGAAGTACGATTTGGACTTCAAGAACCCGCAGGGGGATGGGAAGCAG
GTGTTGAGTGGCCCGGAGCTGGCGGAGATGTACATCCAGCTGTCGAACAA
GTACCCGATTGTTTCAATCGAGGACCCCTTTGACCAGGATGATTGGGCCA
ACTACACGCCCTTCACCGCCGCCATCGGGAGCAAGGTCCAGGTGGTGGGC
GACGACCTCCTCGTCACCAACCCTAAGCGCATCAAGGAGGCGGCACAGAA
GAAGGCTTGCAACGCGTTGTTGCTTAAGGTTAATCAGATTGGCTCCGTAT
CGGAGTCCATCGAGGCCGTAAAGGACAGCAAGAAGAACGGATGGGGCGTC
ATGACCTCCCACCGCTCGGGCGAGACCGAGGACAACTACATTGCTGATTT
GGCCGTGGGTCTGTGCACGGGCCAGATCAAGACGGGGGCGCCCTGTCGAT
CGGAGAGGCTGGCGAAGTACAACCAGCTGTTGCGGATCGAGGAAGATTTG
GGGGCCAAGGCTGTATATGCGGGCAAGACCTTCCGAGCTCCGGCGTGGAT
GGCTTAAGCCTCTTTTGGGATAGAGAGTTAGGTTTGAAGGGTGGAGGCGG
AAAGGGAGGGAGAGAGGAGTTTTCTATGTGATGCATGTTTTTGGTGTGCT
GCGGTGTACGGTGTGTGTGCGAGGTACTGATGATGTTCAAGTGATGGGTG
GTGTCTGTGTGTGCCAATTTTGCAGGCGTGTGTGTGCGCGTGGATGTGCG
TGTGAGGGATGATTCCAATGCGCGTGTATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGGGGGGTGT
CCGGCAGCAAGAGCGGT

protein sequence of jgi.p|Nanoce1779_2|578567

>mRNA_1969-protein ID=mRNA_1969-protein|Name=jgi.p|Nanoce1779_2|578567|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MLTLTARKAAASTARLSGARAASTITAIKGRQIIDSRGNPTVEVDLFTKD
GKFTASVPSGASTGIYEAMELRDGGKAFMGKGVTKAVGNVNTAIAKCLAG
QDVTKQATLDKMMIELDGSENKSKLGANAILGVSLAAAKAGAAAKKVPLY
KHFGDLAGNSNFVLPVPSFNVINGGSHAGNKLAFQEFMILPTGASTFSEA
MAIGCEVYHHLAKVIKAKYGQDAVNVGDEGGFAPNIQSNTEGVELLMSAI
DKAGYLDKVKIGMDVASSEFLTKDGKYDLDFKNPQGDGKQVLSGPELAEM
YIQLSNKYPIVSIEDPFDQDDWANYTPFTAAIGSKVQVVGDDLLVTNPKR
IKEAAQKKACNALLLKVNQIGSVSESIEAVKDSKKNGWGVMTSHRSGETE
DNYIADLAVGLCTGQIKTGAPCRSERLAKYNQLLRIEEDLGAKAVYAGKT
FRAPAWMA*

mRNA from alignment at scaffold_4:463467..465429+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1969 ID=mRNA_1969|Name=jgi.p|Nanoce1779_2|578567|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_4:463467..465429+ (Nannochloropsis oceanica)
ACAGTTGCCCCACAGCCTCTCGAAGCTACCATGCTGACCCTAACAGCCCG
GAAGGCTGCTGCCTCTACCGCACGCCTCTCCGGTGCGCGTGCTGCCTCGA
CCATCACGGCGATCAAAGGCCGCCAGATTATTGACTCCCGGGGCAACCCT
ACCGTGGAGGTGGACCTGTTCACCAAGGATGGCAAGTTCACCGCCTCTGT
GCCGTCGGGCGCCTCTACAGGCATCTACGAGGCCATGGAACTCCGTGACG
GGGGAAAGGCTTTTATGGGCAAGGGTGTTACAAAGGCCGTCGGTAATGTG
AATACAGCCATTGCGAAATGCTTGGCCGGGCAGGATGTGACCAAGCAAGC
TACGCTCGACAAGATGATGATTGAGTTGGACGGTTCCGAGAACAAAAGCA
AGCTGGGCGCAAACGCCATCCTGGGTGTCTCCCTGGCTGCAGCCAAGGCC
GGTGCCGCCGCCAAGAAGGTGCCTCTTTACAAGCACTTTGGGGACTTGGC
GGGTAACAGCAACTTTGTCCTGCCCGTGCCTTCCTTCAATGTGATCAATG
GTGGCAGCCACGCCGGGAACAAGCTGGCGTTTCAGGAATTCATGATCTTG
CCCACGGGGGCGTCGACCTTCTCAGAGGCAATGGCGATTGGCTGCGAAGT
GTACCATCATCTAGCGAAGGTCATCAAGGCCAAGTACGGGCAGGATGCCG
TGAATGTGGGGGATGAGGGAGGGTTTGCGCCCAACATCCAGAGCAACACG
GAAGGTGTCGAGCTCCTCATGTCTGCAATTGACAAGGCCGGGTACCTCGA
TAAGGTCAAGATTGGTATGGATGTGGCGTCTTCAGAGTTTTTGACGAAGG
ACGGGAAGTACGATTTGGACTTCAAGAACCCGCAGGGGGATGGGAAGCAG
GTGTTGAGTGGCCCGGAGCTGGCGGAGATGTACATCCAGCTGTCGAACAA
GTACCCGATTGTTTCAATCGAGGACCCCTTTGACCAGGTACGAAAGAAAC
GGAGGGAAATCTTCTTCATATATATGGAAAGGGCCGAAGGATGTCTCGAT
TGGATCAGAGGAATGAAGGGTCGGTGGGAGGGAAAGAGAAAGGGAGGGAG
GGAGGGAGGGACGGGCCTTTGTAGCTGTTGTCTTGAGGCTCATATTATTT
GCTTTTCGTCCCACTCACCCCTCCCTTCTTGCTATTTCTTCCTTTCCCTA
TTCTCACCTTGCCCCCCTCCTTCCTTCCCTCAGGATGATTGGGCCAACTA
CACGCCCTTCACCGCCGCCATCGGGAGCAAGGTCCAGGTGGTGGGCGACG
ACCTCCTCGTCACCAACCCTAAGCGCATCAAGGAGGCGGCACAGAAGAAG
GCTTGCAACGCGTTGTTGCTTAAGGTTAATCAGATTGGCTCCGTATCGGA
GTCCATCGAGGCCGTAAAGGACAGCAAGAAGAACGGATGGGGCGTCATGA
CCTCCCACCGCTCGGGCGAGACCGAGGACAACTACATTGCTGATTTGGCC
GTGGGTCTGTGCACGGGCCAGATCAAGACGGGGGCGCCCTGTCGATCGGA
GAGGCTGGCGAAGTACAACCAGCTGTTGCGGATCGAGGAAGATTTGGGGG
CCAAGGCTGTATATGCGGGCAAGACCTTCCGAGCTCCGGCGTGGATGGCT
TAAGCCTCTTTTGGGATAGAGAGTTAGGTTTGAAGGGTGGAGGCGGAAAG
GGAGGGAGAGAGGAGTTTTCTATGTGATGCATGTTTTTGGTGTGCTGCGG
TGTACGGTGTGTGTGCGAGGTACTGATGATGTTCAAGTGATGGGTGGTGT
CTGTGTGTGCCAATTTTGCAGGCGTGTGTGTGCGCGTGGATGTGCGTGTG
AGGGATGATTCCAATGCGCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGGGGGGTGTCCGG
CAGCAAGAGCGGT

Coding sequence (CDS) from alignment at scaffold_4:463467..465429+

>mRNA_1969 ID=mRNA_1969|Name=jgi.p|Nanoce1779_2|578567|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_4:463467..465429+ (Nannochloropsis oceanica)
ATGCTGACCCTAACAGCCCGGAAGGCTGCTGCCTCTACCGCACGCCTCTC
CGGTGCGCGTGCTGCCTCGACCATCACGGCGATCAAAGGCCGCCAGATTA
TTGACTCCCGGGGCAACCCTACCGTGGAGGTGGACCTGTTCACCAAGGAT
GGCAAGTTCACCGCCTCTGTGCCGTCGGGCGCCTCTACAGGCATCTACGA
GGCCATGGAACTCCGTGACGGGGGAAAGGCTTTTATGGGCAAGGGTGTTA
CAAAGGCCGTCGGTAATGTGAATACAGCCATTGCGAAATGCTTGGCCGGG
CAGGATGTGACCAAGCAAGCTACGCTCGACAAGATGATGATTGAGTTGGA
CGGTTCCGAGAACAAAAGCAAGCTGGGCGCAAACGCCATCCTGGGTGTCT
CCCTGGCTGCAGCCAAGGCCGGTGCCGCCGCCAAGAAGGTGCCTCTTTAC
AAGCACTTTGGGGACTTGGCGGGTAACAGCAACTTTGTCCTGCCCGTGCC
TTCCTTCAATGTGATCAATGGTGGCAGCCACGCCGGGAACAAGCTGGCGT
TTCAGGAATTCATGATCTTGCCCACGGGGGCGTCGACCTTCTCAGAGGCA
ATGGCGATTGGCTGCGAAGTGTACCATCATCTAGCGAAGGTCATCAAGGC
CAAGTACGGGCAGGATGCCGTGAATGTGGGGGATGAGGGAGGGTTTGCGC
CCAACATCCAGAGCAACACGGAAGGTGTCGAGCTCCTCATGTCTGCAATT
GACAAGGCCGGGTACCTCGATAAGGTCAAGATTGGTATGGATGTGGCGTC
TTCAGAGTTTTTGACGAAGGACGGGAAGTACGATTTGGACTTCAAGAACC
CGCAGGGGGATGGGAAGCAGGTGTTGAGTGGCCCGGAGCTGGCGGAGATG
TACATCCAGCTGTCGAACAAGTACCCGATTGTTTCAATCGAGGACCCCTT
TGACCAGGATGATTGGGCCAACTACACGCCCTTCACCGCCGCCATCGGGA
GCAAGGTCCAGGTGGTGGGCGACGACCTCCTCGTCACCAACCCTAAGCGC
ATCAAGGAGGCGGCACAGAAGAAGGCTTGCAACGCGTTGTTGCTTAAGGT
TAATCAGATTGGCTCCGTATCGGAGTCCATCGAGGCCGTAAAGGACAGCA
AGAAGAACGGATGGGGCGTCATGACCTCCCACCGCTCGGGCGAGACCGAG
GACAACTACATTGCTGATTTGGCCGTGGGTCTGTGCACGGGCCAGATCAA
GACGGGGGCGCCCTGTCGATCGGAGAGGCTGGCGAAGTACAACCAGCTGT
TGCGGATCGAGGAAGATTTGGGGGCCAAGGCTGTATATGCGGGCAAGACC
TTCCGAGCTCCGGCGTGGATGGCTTAAATGCTGACCCTAACAGCCCGGAA
GGCTGCTGCCTCTACCGCACGCCTCTCCGGTGCGCGTGCTGCCTCGACCA
TCACGGCGATCAAAGGCCGCCAGATTATTGACTCCCGGGGCAACCCTACC
GTGGAGGTGGACCTGTTCACCAAGGATGGCAAGTTCACCGCCTCTGTGCC
GTCGGGCGCCTCTACAGGCATCTACGAGGCCATGGAACTCCGTGACGGGG
GAAAGGCTTTTATGGGCAAGGGTGTTACAAAGGCCGTCGGTAATGTGAAT
ACAGCCATTGCGAAATGCTTGGCCGGGCAGGATGTGACCAAGCAAGCTAC
GCTCGACAAGATGATGATTGAGTTGGACGGTTCCGAGAACAAAAGCAAGC
TGGGCGCAAACGCCATCCTGGGTGTCTCCCTGGCTGCAGCCAAGGCCGGT
GCCGCCGCCAAGAAGGTGCCTCTTTACAAGCACTTTGGGGACTTGGCGGG
TAACAGCAACTTTGTCCTGCCCGTGCCTTCCTTCAATGTGATCAATGGTG
GCAGCCACGCCGGGAACAAGCTGGCGTTTCAGGAATTCATGATCTTGCCC
ACGGGGGCGTCGACCTTCTCAGAGGCAATGGCGATTGGCTGCGAAGTGTA
CCATCATCTAGCGAAGGTCATCAAGGCCAAGTACGGGCAGGATGCCGTGA
ATGTGGGGGATGAGGGAGGGTTTGCGCCCAACATCCAGAGCAACACGGAA
GGTGTCGAGCTCCTCATGTCTGCAATTGACAAGGCCGGGTACCTCGATAA
GGTCAAGATTGGTATGGATGTGGCGTCTTCAGAGTTTTTGACGAAGGACG
GGAAGTACGATTTGGACTTCAAGAACCCGCAGGGGGATGGGAAGCAGGTG
TTGAGTGGCCCGGAGCTGGCGGAGATGTACATCCAGCTGTCGAACAAGTA
CCCGATTGTTTCAATCGAGGACCCCTTTGACCAGGATGATTGGGCCAACT
ACACGCCCTTCACCGCCGCCATCGGGAGCAAGGTCCAGGTGGTGGGCGAC
GACCTCCTCGTCACCAACCCTAAGCGCATCAAGGAGGCGGCACAGAAGAA
GGCTTGCAACGCGTTGTTGCTTAAGGTTAATCAGATTGGCTCCGTATCGG
AGTCCATCGAGGCCGTAAAGGACAGCAAGAAGAACGGATGGGGCGTCATG
ACCTCCCACCGCTCGGGCGAGACCGAGGACAACTACATTGCTGATTTGGC
CGTGGGTCTGTGCACGGGCCAGATCAAGACGGGGGCGCCCTGTCGATCGG
AGAGGCTGGCGAAGTACAACCAGCTGTTGCGGATCGAGGAAGATTTGGGG
GCCAAGGCTGTATATGCGGGCAAGACCTTCCGAGCTCCGGCGTGGATGGC
TTAA

Synonyms

Publications