jgi.p|Nanoce1779_2|668715, mRNA_1967 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668715
Unique Name	mRNA_1967
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2346
Alignment location	scaffold_4:457232..459795 -

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Properties


Property Name	Value
TranscriptId	668801
Track	FilteredModels2
ProteinId	668715

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:457232..459795 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668715	gene_1967	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668715	mRNA_1967-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1967	CDS_1967	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:457232..459795-
coding sequence from alignment at scaffold_4:457232..459795-

mRNA sequence

>mRNA_1967 ID=mRNA_1967|Name=jgi.p|Nanoce1779_2|668715|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp
ACAGGCACTTCAGGGCAAAAAAATTATGCATAATCTCTTCACCATGGTCG
GCCGGGCCAGCAACTGGCGCTCGTCTCCGCCCAGCACCTCTATTGGTATG
AACCCCTCTCCCGCCCATGTCCCCTCCAGCCCGTTTGCATTTGCTGGGGG
CAAGTGCAAGGCGGCTGCACGATCCCTCGGATGGCGCAGCGTGTACATGT
TTGTCTCGCTACTGGCGTTATTGGGGGCGTCGGGGGGTCAGAGCCGATTG
ATCGAATTCGTTTGCAAGCAATTGGGTGGCAGCAACAAATGTCCGCCCAT
CCAAACCTGCCCAGTGGGGGAAGCCCTCTTCCACAAGCCACACTCCAAGC
CCACCTACGATGGGTGCGGAACGCACGGCCTGAAAGTCAGCTTGAGCCCT
ACGGACTTCTCCTCTTGCTGTAATCTGCATGATTTGTGCTACGGTCAATG
CGGGCGCCGGAAGAAAGAGTGTGATGATTTTTTTGAGGCTTGTATGTTGG
CACAGTGTCAGCGTGAACATCATGTCAATAGTAGTAGCAGCAGCAGTAGC
AGTAGTAGCAGCAGCCACCACTCGCATTCCCTTCAAATACAGGGAGGAGG
ACACAGGCAGCAGCAGCCAATGCCTCAATCGAAGGAACTGAAGCGATGCG
TGCGGGCCGCTAAACTATACTATCACGCTGTGTATGGACTTGGTTGCTTC
GCATTTCGTCGAGCCAAAGCGAAACACTGCGAGTGCCGGCCTTATCAGAA
GGGGGATAAGGACAAGGAGAAGGAGGAGGAGGGCGGTGAGGGTGGTAAGA
AGAGCAAAACGGAGAGGATTAATGACATAAGGGGGAGCCTCGTGGCGGTG
ATGGAAAGAGCGGCTCGGGCCGACACGCCAGTGGCTGGGGCTAGTCATTG
CAAATGGGAAGAATTCCTTTGAAACGCACTTGCGCTGTTTCCGGGCGGTG
GTAGCAAGAGGAAAGAGGAAAAATAGTTAGATAGAAAGGAAGGCGAACCC
AAGCCGACGCTTCTGAGAGTTGTTCTGGAGGGAAAGAGGCCGAAGGTTAG
GCATTCCACGTAACGAGGAAATTTTTGCATGCAGAAAGAGGATTTTGTGG
TTTGAAATAAACCAAACGGGGGACTTGTCCCGGAAAGTATGAGTACATGT
CAGAGGAATGGCGAAATGGACCAGGGGGTGAAGAGACAGGACGATGTGGT
CTTTGGTCATTTGGAGATGTATTGTATCACGCAGTAGAGGATATTTCTCC
TAAAGGTCTGGAAATTTGCGAATTTAAGGAAGGATGTATCTCTCAAGTAT
TTAATGATTGTTTTATAAGAGAGAGAGTGGTTGTTTTGGTAAAAGGTTTG
AAAGAGGCAGGAGGGGGATGATGGGGAATGGATGAAATGAAATGGAGAAA
ACTGTGTAAATATGTGTGTAATATATACAAGGGCACATTCGGGTGCTTGA
TGTGTGTGTAGTGTGTGAGTATGTGTGTTGGTTCCGTATCTTTCTTAAAG
TGAGAGGGGGGGAAAGAAACGGACTGAAGAAAACGAATGAACGGAAAGCG
ACCGAAAAAAAAAACAAAAACACGGGCTTTTGAATGAGAAAGAGAAATCA
TCGCTTGGTTCTGATCCTCGTCGCTGCTGCTGCTGCTGCTGCTGCTGCCC
TTTCAAAGGAACCACGCTTTTTGGTTTTTGTGAGAGGGCAAACCTACGAC
AACACGAGCTTGTCGGCCCTTGCATAGAAGGCCTCTTGTCAAAATGATCG
CTTGGATTGTTCGTTCTTTCGTTTTGTTTCCGAGTTCCGGTCCCGCCCGT
TCCGTTTATCCCAATTGCTAGCTAACACCTTCGGCCTTGCCCCCCTCCCT
CCATCGCTCCCTGCCTCCCTTCCTTCCGCCCTTCCATCACGCTATGCCCC
TTCATATCTCAAAGGAAACAATTGCCAGAATGGGGCAAAAACAAAGCACA
TTCGACAAATCCTCTCCGTTCGCCCCTCCCTCCATCCCTCCTCCTTCCTC
CACAATATCAAACGGTATGCAAGATGCTACCCACTTACTGCCACAGCACA
CTTGTGTCCTCCCTCTGCCGTTAAGATTACTTCTCGCCTTCAAGCTACCG
AGGCCGGCACCCTCTTTGTCATCGCCTGTTCATCGTCGTCTACTGTCGTG
CGTGGGGGTTTACGCGTCCTCCTGTCGAAGTAGGGAAACCAAAAACCAAC
AAGAGGAGCAAAAAAGTGAGGACCCGCAACATGATATAGCAAGTCCAGAT
TTTTCGTTCCGTCCCCCCCCTTCGCCCCCTTCCCATCGCATTTCTGTTAA
GTCAAATATGTGATTGTTTACAATATATTGCAGAGATTGTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|668715

>mRNA_1967-protein ID=mRNA_1967-protein|Name=jgi.p|Nanoce1779_2|668715|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MHNLFTMVGRASNWRSSPPSTSIGMNPSPAHVPSSPFAFAGGKCKAAARS
LGWRSVYMFVSLLALLGASGGQSRLIEFVCKQLGGSNKCPPIQTCPVGEA
LFHKPHSKPTYDGCGTHGLKVSLSPTDFSSCCNLHDLCYGQCGRRKKECD
DFFEACMLAQCQREHHVNSSSSSSSSSSSSHHSHSLQIQGGGHRQQQPMP
QSKELKRCVRAAKLYYHAVYGLGCFAFRRAKAKHCECRPYQKGDKDKEKE
EEGGEGGKKSKTERINDIRGSLVAVMERAARADTPVAGASHCKWEEFL*

mRNA from alignment at scaffold_4:457232..459795-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1967 ID=mRNA_1967|Name=jgi.p|Nanoce1779_2|668715|organism=Nannochloropsis oceanica|type=mRNA|length=2564bp|location=Sequence derived from alignment at scaffold_4:457232..459795- (Nannochloropsis oceanica)
ACAGGCACTTCAGGGCAAAAAAATTATGCATAATCTCTTCACCATGGTCG
GCCGGGCCAGCAACTGGCGCTCGTCTCCGCCCAGCACCTCTATTGGTATG
AACCCCTCTCCCGCCCATGTCCCCTCCAGCCCGTTTGCATTTGCTGGGGG
CAAGTGCAAGGCGGCTGCACGATCCCTCGGATGGCGCAGCGTGTACATGT
TTGTCTCGCTACTGGCGTTATTGGGGGCGTCGGGGGGTCAGAGCCGATTG
ATCGAATTCGTTTGCAAGCAATTGGGTGGCAGCAACAAATGTCCGCCCAT
CCAAACCTGCCCAGTGGGGGAAGCCCTCTTCCACAAGCCACACTCCAAGG
TATACATCAGCAAATGAATGTCTCGGCAAAGTAGAAAAACGAAGGGGTTG
TGATGAATCGCAAGGAGAGGAGAATTGGGCACTATTTGCTTCTGTGTCCC
AACGCATTGCCCCCTCCTCCTCCTCCTCCTCCTCCACTTCCACCCCCTCC
TTTATTCTTGAGATTCACGCTTAAATCATTCTCCCTCTACCTCTACCTTC
TGGTTCCCCAATTACAGCCCACCTACGATGGGTGCGGAACGCACGGCCTG
AAAGTCAGCTTGAGCCCTACGGACTTCTCCTCTTGCTGTAATCTGCATGA
TTTGTGCTACGGTCAATGCGGGCGCCGGAAGAAAGAGTGTGATGATTTTT
TTGAGGCTTGTATGTTGGCACAGTGTCAGCGTGAACATCATGTCAATAGT
AGTAGCAGCAGCAGTAGCAGTAGTAGCAGCAGCCACCACTCGCATTCCCT
TCAAATACAGGGAGGAGGACACAGGCAGCAGCAGCCAATGCCTCAATCGA
AGGAACTGAAGCGATGCGTGCGGGCCGCTAAACTATACTATCACGCTGTG
TATGGACTTGGTTGCTTCGCATTTCGTCGAGCCAAAGCGAAACACTGCGA
GTGCCGGCCTTATCAGAAGGGGGATAAGGACAAGGAGAAGGAGGAGGAGG
GCGGTGAGGGTGGTAAGAAGAGCAAAACGGAGAGGATTAATGACATAAGG
GGGAGCCTCGTGGCGGTGATGGAAAGAGCGGCTCGGGCCGACACGCCAGT
GGCTGGGGCTAGTCATTGCAAATGGGAAGAATTCCTTTGAAACGCACTTG
CGCTGTTTCCGGGCGGTGGTAGCAAGAGGAAAGAGGAAAAATAGTTAGAT
AGAAAGGAAGGCGAACCCAAGCCGACGCTTCTGAGAGTTGTTCTGGAGGG
AAAGAGGCCGAAGGTTAGGCATTCCACGTAACGAGGAAATTTTTGCATGC
AGAAAGAGGATTTTGTGGTTTGAAATAAACCAAACGGGGGACTTGTCCCG
GAAAGTATGAGTACATGTCAGAGGAATGGCGAAATGGACCAGGGGGTGAA
GAGACAGGACGATGTGGTCTTTGGTCATTTGGAGATGTATTGTATCACGC
AGTAGAGGATATTTCTCCTAAAGGTCTGGAAATTTGCGAATTTAAGGAAG
GATGTATCTCTCAAGTATTTAATGATTGTTTTATAAGAGAGAGAGTGGTT
GTTTTGGTAAAAGGTTTGAAAGAGGCAGGAGGGGGATGATGGGGAATGGA
TGAAATGAAATGGAGAAAACTGTGTAAATATGTGTGTAATATATACAAGG
GCACATTCGGGTGCTTGATGTGTGTGTAGTGTGTGAGTATGTGTGTTGGT
TCCGTATCTTTCTTAAAGTGAGAGGGGGGGAAAGAAACGGACTGAAGAAA
ACGAATGAACGGAAAGCGACCGAAAAAAAAAACAAAAACACGGGCTTTTG
AATGAGAAAGAGAAATCATCGCTTGGTTCTGATCCTCGTCGCTGCTGCTG
CTGCTGCTGCTGCTGCCCTTTCAAAGGAACCACGCTTTTTGGTTTTTGTG
AGAGGGCAAACCTACGACAACACGAGCTTGTCGGCCCTTGCATAGAAGGC
CTCTTGTCAAAATGATCGCTTGGATTGTTCGTTCTTTCGTTTTGTTTCCG
AGTTCCGGTCCCGCCCGTTCCGTTTATCCCAATTGCTAGCTAACACCTTC
GGCCTTGCCCCCCTCCCTCCATCGCTCCCTGCCTCCCTTCCTTCCGCCCT
TCCATCACGCTATGCCCCTTCATATCTCAAAGGAAACAATTGCCAGAATG
GGGCAAAAACAAAGCACATTCGACAAATCCTCTCCGTTCGCCCCTCCCTC
CATCCCTCCTCCTTCCTCCACAATATCAAACGGTATGCAAGATGCTACCC
ACTTACTGCCACAGCACACTTGTGTCCTCCCTCTGCCGTTAAGATTACTT
CTCGCCTTCAAGCTACCGAGGCCGGCACCCTCTTTGTCATCGCCTGTTCA
TCGTCGTCTACTGTCGTGCGTGGGGGTTTACGCGTCCTCCTGTCGAAGTA
GGGAAACCAAAAACCAACAAGAGGAGCAAAAAAGTGAGGACCCGCAACAT
GATATAGCAAGTCCAGATTTTTCGTTCCGTCCCCCCCCTTCGCCCCCTTC
CCATCGCATTTCTGTTAAGTCAAATATGTGATTGTTTACAATATATTGCA
GAGATTGTCCCTCC

Coding sequence (CDS) from alignment at scaffold_4:457232..459795-

>mRNA_1967 ID=mRNA_1967|Name=jgi.p|Nanoce1779_2|668715|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_4:457232..459795- (Nannochloropsis oceanica)
CCCACCTACGATGGGTGCGGAACGCACGGCCTGAAAGTCAGCTTGAGCCC
TACGGACTTCTCCTCTTGCTGTAATCTGCATGATTTGTGCTACGGTCAAT
GCGGGCGCCGGAAGAAAGAGTGTGATGATTTTTTTGAGGCTTGTATGTTG
GCACAGTGTCAGCGTGAACATCATGTCAATAGTAGTAGCAGCAGCAGTAG
CAGTAGTAGCAGCAGCCACCACTCGCATTCCCTTCAAATACAGGGAGGAG
GACACAGGCAGCAGCAGCCAATGCCTCAATCGAAGGAACTGAAGCGATGC
GTGCGGGCCGCTAAACTATACTATCACGCTGTGTATGGACTTGGTTGCTT
CGCATTTCGTCGAGCCAAAGCGAAACACTGCGAGTGCCGGCCTTATCAGA
AGGGGGATAAGGACAAGGAGAAGGAGGAGGAGGGCGGTGAGGGTGGTAAG
AAGAGCAAAACGGAGAGGATTAATGACATAAGGGGGAGCCTCGTGGCGGT
GATGGAAAGAGCGGCTCGGGCCGACACGCCAGTGGCTGGGGCTAGTCATT
GCAAATGGGAAGAATTCCTTTGAATGCATAATCTCTTCACCATGGTCGGC
CGGGCCAGCAACTGGCGCTCGTCTCCGCCCAGCACCTCTATTGGTATGAA
CCCCTCTCCCGCCCATGTCCCCTCCAGCCCGTTTGCATTTGCTGGGGGCA
AGTGCAAGGCGGCTGCACGATCCCTCGGATGGCGCAGCGTGTACATGTTT
GTCTCGCTACTGGCGTTATTGGGGGCGTCGGGGGGTCAGAGCCGATTGAT
CGAATTCGTTTGCAAGCAATTGGGTGGCAGCAACAAATGTCCGCCCATCC
AAACCTGCCCAGTGGGGGAAGCCCTCTTCCACAAGCCACACTCCAAGCCC
ACCTACGATGGGTGCGGAACGCACGGCCTGAAAGTCAGCTTGAGCCCTAC
GGACTTCTCCTCTTGCTGTAATCTGCATGATTTGTGCTACGGTCAATGCG
GGCGCCGGAAGAAAGAGTGTGATGATTTTTTTGAGGCTTGTATGTTGGCA
CAGTGTCAGCGTGAACATCATGTCAATAGTAGTAGCAGCAGCAGTAGCAG
TAGTAGCAGCAGCCACCACTCGCATTCCCTTCAAATACAGGGAGGAGGAC
ACAGGCAGCAGCAGCCAATGCCTCAATCGAAGGAACTGAAGCGATGCGTG
CGGGCCGCTAAACTATACTATCACGCTGTGTATGGACTTGGTTGCTTCGC
ATTTCGTCGAGCCAAAGCGAAACACTGCGAGTGCCGGCCTTATCAGAAGG
GGGATAAGGACAAGGAGAAGGAGGAGGAGGGCGGTGAGGGTGGTAAGAAG
AGCAAAACGGAGAGGATTAATGACATAAGGGGGAGCCTCGTGGCGGTGAT
GGAAAGAGCGGCTCGGGCCGACACGCCAGTGGCTGGGGCTAGTCATTGCA
AATGGGAAGAATTCCTTTGAATGCATAATCTCTTCACCATGGTCGGCCGG
GCCAGCAACTGGCGCTCGTCTCCGCCCAGCACCTCTATTGGTATGAACCC
CTCTCCCGCCCATGTCCCCTCCAGCCCGTTTGCATTTGCTGGGGGCAAGT
GCAAGGCGGCTGCACGATCCCTCGGATGGCGCAGCGTGTACATGTTTGTC
TCGCTACTGGCGTTATTGGGGGCGTCGGGGGGTCAGAGCCGATTGATCGA
ATTCGTTTGCAAGCAATTGGGTGGCAGCAACAAATGTCCGCCCATCCAAA
CCTGCCCAGTGGGGGAAGCCCTCTTCCACAAGCCACACTCCAAG

Synonyms

Publications