jgi.p|Nanoce1779_2|578559, mRNA_1966 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578559
Unique NamemRNA_1966
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1431
Alignment locationscaffold_4:456007..457665 +

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Properties
Property NameValue
TranscriptId578645
TrackFilteredModels2
ProteinId578559
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:456007..457665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578559gene_1966Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578559mRNA_1966-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1966CDS_1966Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1966 ID=mRNA_1966|Name=jgi.p|Nanoce1779_2|578559|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
CTTAAGCATAGCAGGCAGTCCTTTCCGGTCATACTTCCGTGACTTGAGAG
ACCATCATCGCCACACATCCACGCACCCACCACACATTCTTCTTTGTATG
CTTCTCATGACGCCTTTCCAGACACACACTCGGATCATTCCCTTTCTATT
CAAGCAGGCACAGTTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTG
GGCCGGCTTCAGGACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTT
GGAAGCCAGACAGCCTCCTCACCTGCCTCTCTGATACTACGGCTGCCCAT
GGCTGCCATTTCTAGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGG
AGAAAATAATGCAATCTGTTTAAATGCTCCTTATGGAAAGCGTATGTGCG
GCTGTGATTAAAGACGCGCCGCCGTCCTGGCATCAGGATTGATGATGGTC
GCTGCACTGGACTGAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATAT
ATACCAAGGGCTTTCTCATTCATCACTGTCCGCACTTAAGACTTTATTGT
TATTTTCGTGTCAGTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAAT
AACCCCGAAATGCTCTGTTATTTCTCACATCCATCTACCCACCCTACCCT
ATCCACGCCCAGACCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGC
TGAGGAGGGCGCGGCAACCATCGAGGACTATGACTTCTCCGGGACCACGG
CGGGGGCTTCAGATGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGC
GGGTACATCATGATCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTAC
CTCTAAGACGGGGAAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTG
ACATTTTTAACGGGAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACC
ACATATGTGCCCAACGTGAATCGCTCTGAGTACCAGCTTTTGGACATTGA
GGATGGCTTCCTCTCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACT
TGAAGCTGCCTGATTACCCGGAGGGATTCGATCAGGAGATTCTTAAGGCG
TTCAAGGACGGGAAGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCAT
TGACCAGGTCATCGCTTACAAGGAGGACGCGTAAACCCCCACGCACGACA
GTAGACGACGATGAACAGGCGATGACAAAGAGGGTGCCGGCCTCGGTAGC
TTGAAGGCGAGAAGTAATCTTAACGGCAGAGGGAGGACACAAGTGTGCTG
TGGCAGTAAGTGGGTAGCATCTTGCATACCGTTTGATATTGTGGAGGAAG
GAGGAGGGATGGAGGGAGGGGCGAACGGAGAGGATTTGTCGAATGTGCTT
TGTTTTTGCCCCATTCTGGCAATTGTTTCCT
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protein sequence of jgi.p|Nanoce1779_2|578559

>mRNA_1966-protein ID=mRNA_1966-protein|Name=jgi.p|Nanoce1779_2|578559|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNV
STSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLD
IEDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSAC
GIDQVIAYKEDA*
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mRNA from alignment at scaffold_4:456007..457665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1966 ID=mRNA_1966|Name=jgi.p|Nanoce1779_2|578559|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at scaffold_4:456007..457665+ (Nannochloropsis oceanica)
CTTAAGCATAGCAGGCAGTCCTTTCCGGTCATACTTCCGTGACTTGAGAG
ACCATCATCGCCACACATCCACGCACCCACCACACATTCTTCTTTGTATG
CTTCTCATGACGCCTTTCCAGACACACACTCGGATCATTCCCTTTCTATT
CAAGCAGGCACAGTTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTG
GGCCGGCTTCAGGACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTT
GGAAGCCAGACAGCCTCCTCACCTGCCTCTCTGATACTACGGCTGCCCAT
GGCTGCCATTTCTAGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGG
AGAAAATAATGCAATCTGTTTAAATGCTCCTTATGGAAAGCGTATGTGCG
GCTGTGATTAAAGACGCGCCGCCGTCCTGGCATCAGGATTGATGATGGTC
GCTGCACTGGACTGAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATAT
ATACCAAGGGCTTTCTCATTCATCACTGTCCGCACTTAAGACTTTATTGT
TATTTTCGTGTCAGTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAAT
AACCCCGAAATGCTCTGTTATTTCTCACATCCATCTACCCACCCTACCCT
ATCCACGCCCAGACCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGC
TGAGGAGGGCGCGGCAACCATCGAGGACTATGACTTCTCCGGGACCACGG
CGGGGGCTTCAGATGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGC
GGGTACATCATGATCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTAC
CTCTAAGACGGGGAAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTG
ACATTTTTAACGGGAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACC
ACATATGTGCCCAACGTGAATCGCTCTGAGTACCAGCTTTTGGACATTGA
GGATGGCTTCCTCTCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACT
TGAAGCTGCCTGATTACCCGGAGGGATTCGATCAGGAGATTCTTAAGGCG
TTCAAGGACGGGAAGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCAT
TGACCAGGTCATCGCTTACAAGGTGGGTGATGGAGGGAGGAAGGGAGGGA
GGGAGGGGCTTTTTCGAATTGTTATGGAGGGACAATCTCTGCAATATATT
GTAAACAATCACATATTTGACTTAACAGAAATGCGATGGGAAGGGGGCGA
AGGGGGGGGACGGAACGAAAAATCTGGACTTGCTATATCATGTTGCGGGT
CCTCACTTTTTTGCTCCTCTTGTTGGTTTTTGGTTTCCCTACTTCGACAG
GAGGACGCGTAAACCCCCACGCACGACAGTAGACGACGATGAACAGGCGA
TGACAAAGAGGGTGCCGGCCTCGGTAGCTTGAAGGCGAGAAGTAATCTTA
ACGGCAGAGGGAGGACACAAGTGTGCTGTGGCAGTAAGTGGGTAGCATCT
TGCATACCGTTTGATATTGTGGAGGAAGGAGGAGGGATGGAGGGAGGGGC
GAACGGAGAGGATTTGTCGAATGTGCTTTGTTTTTGCCCCATTCTGGCAA
TTGTTTCCT
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Coding sequence (CDS) from alignment at scaffold_4:456007..457665+

>mRNA_1966 ID=mRNA_1966|Name=jgi.p|Nanoce1779_2|578559|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_4:456007..457665+ (Nannochloropsis oceanica)
ATGGCTGAGGAGGGCGCGGCAACCATCGAGGACTATGACTTCTCCGGGAC
CACGGCGGGGGCTTCAGATGTTTTCCCTTCCGAGGCCGGCCAGATCAAGA
AGGGCGGGTACATCATGATCAAAGGGCGTCCTTGCAAGGTCGTCAATGTG
TCTACCTCTAAGACGGGGAAGCACGGGCACGCCAAGGCCAACTTCACGGC
AATTGACATTTTTAACGGGAAGAAGGTGGAGGACGTGGTGCCCACAACGC
ATACCACATATGTGCCCAACGTGAATCGCTCTGAGTACCAGCTTTTGGAC
ATTGAGGATGGCTTCCTCTCGCTGCTGACGGATGGGGGAGAAACCCGCGA
TGACTTGAAGCTGCCTGATTACCCGGAGGGATTCGATCAGGAGATTCTTA
AGGCGTTCAAGGACGGGAAGTCCCTTTCGATCTCTGTGCTGTCGGCGTGT
GGCATTGACCAGGTCATCGCTTACAAGGAGGACGCGTAAATGGCTGAGGA
GGGCGCGGCAACCATCGAGGACTATGACTTCTCCGGGACCACGGCGGGGG
CTTCAGATGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGCGGGTAC
ATCATGATCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTACCTCTAA
GACGGGGAAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTGACATTT
TTAACGGGAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACCACATAT
GTGCCCAACGTGAATCGCTCTGAGTACCAGCTTTTGGACATTGAGGATGG
CTTCCTCTCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACTTGAAGC
TGCCTGATTACCCGGAGGGATTCGATCAGGAGATTCTTAAGGCGTTCAAG
GACGGGAAGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCATTGACCA
GGTCATCGCTTACAAGGAGGACGCGTAA
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Synonyms
Publications