jgi.p|Nanoce1779_2|578557, mRNA_1965 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578557
Unique NamemRNA_1965
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1289
Alignment locationscaffold_4:454635..456031 +

Link to JBrowse

Properties
Property NameValue
TranscriptId578643
TrackFilteredModels2
ProteinId578557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:454635..456031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578557gene_1965Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578557mRNA_1965-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1965CDS_1965Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1965 ID=mRNA_1965|Name=jgi.p|Nanoce1779_2|578557|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGTCATTTGCGTAGCTTTTATTCTGACTCT
GCCTCTTGCTTCGGATCGCATACTGCTGCTGCTGCTGATGCCCATCCTCG
TTGCAAGCATCCTCGTCTTCCTCCACATTACCCTCCAGCCGACTCCTCCC
ATGTCGTATTCTTGTGGTTTTTCTTCTACCATCCTCCGCCTCTTCCTCCC
CCTCCCTCTCCCCCTCCCCCTCCTCTTCCTCAATAGTCTGAAACCGCTGC
CTTCTTTTCTTCCTCTTCCTCCTCTGCTGCCCCTTCTTTTTCTGAACCTG
CTGTTCCGTCCCTCTCTGGAATGCTGCTGCTGTTGCTGCTTCCTGTGCCA
TCACCTCCAAGTCTTCCAACTCCGGTATCTCTGAGTCATCCAGCTCTCGT
CCTCTCCACCCTCCTCCCCCTCCTCTCCACCCTCCTTCCTCCCCGCCTAG
CGATTCTACTAACCACTCTCCTAGAGGACGAATGAAAGCTTGGATCTCCT
CTTTATACACTGTCAAAACAATGGCTAAGATGGTTATTATCCGGCATCCT
GATTTCTGAAATACCACCTGTTCCAGGCCTTGGGAGAGGTGAACGAGGCC
GCGAAGAAGGAGGGAGAGGCAGGCGGGGAGGGGGGAGGCCTTGCCTGTTG
CGAGCGCGTCTTCTTGCAGCTCCATCCAACGCCATATGGCGGAGCTTTTG
TCGTTGGCCTTCTTACAAAGACTATTTGCCCAGCAGCTAGATGGGCAAGT
ATCCCCACCATTCACGAGGTCGCACACCATGGATATTTGGTTGCAAATGT
TCCAGACCCGACGGCAAAGGGCGAGGAGGACCGCGGCCCACAGGACCCAA
ACGTACCAGGGCTGCCCTCCCGATGTGATGGCGCGGAGTTTCTTCATCAT
CATTTGTGGGTTGGGCCAGGTACGGTGCCGAGGCAGGGTGCAGAGATAGA
TGTCCTGCTACTTGAGCTAGATTAGAACAGCCTCACCGCTAGTTCCTCGT
GTATAGTGCAGGTGGCATCCGCCTGCGGTGGGCGCGACCTCCCTGTCGCG
TCGGGAGTATTGTGGGCTTGGTTGGCCCCTTGTGATTCATGGGAGGGGAG
GGGTGACGACGCGTGGAGAGTGATACTAGATGTTGCTGCCTAACGAATGC
TCATGTACGAACACTCGAACGACCTAAAAATACATACAAAGCGCAAATGG
GACAAGGGGCTGACCTTAAGCATAGCAGGCAGTCCTTTC
back to top

protein sequence of jgi.p|Nanoce1779_2|578557

>mRNA_1965-protein ID=mRNA_1965-protein|Name=jgi.p|Nanoce1779_2|578557|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MPILVASILVFLHITLQPTPPMSYSCGFSSTILRLFLPLPLPLPLLFLNS
LKPLPSFLPLPPLLPLLFLNLLFRPSLECCCCCCFLCHHLQVFQLRYL*
back to top

mRNA from alignment at scaffold_4:454635..456031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1965 ID=mRNA_1965|Name=jgi.p|Nanoce1779_2|578557|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp|location=Sequence derived from alignment at scaffold_4:454635..456031+ (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGTCATTTGCGTAGCTTTTATTCTGACTCT
GCCTCTTGCTTCGGATCGCATACTGCTGCTGCTGCTGATGCCCATCCTCG
TTGCAAGCATCCTCGTCTTCCTCCACATTACCCTCCAGCCGACTCCTCCC
ATGTCGTATTCTTGTGGTTTTTCTTCTACCATCCTCCGCCTCTTCCTCCC
CCTCCCTCTCCCCCTCCCCCTCCTCTTCCTCAATAGTCTGAAACCGCTGC
CTTCTTTTCTTCCTCTTCCTCCTCTGCTGCCCCTTCTTTTTCTGAACCTG
CTGTTCCGTCCCTCTCTGGAATGCTGCTGCTGTTGCTGCTTCCTGTGCCA
TCACCTCCAAGTCTTCCAACTCCGGTATCTCTGAGTCATCCAGCTCTCGT
CCTCTCCACCCTCCTCCCCCTCCTCTCCACCCTCCTTCCTCCCCGCCTAG
CGATTCTACTAACCACTCTCCTAGAGGACGAATGAAAGCTTGGATCTCCT
CTTTATACACTGTCAAAACAATGGCTAAGATGGTTATTATCCGGCATCCT
GATTTCTGAAATACCACCTGTTCCAGGCCTTGGGAGAGGTGAACGAGGCC
GCGAAGAAGGAGGGAGAGGCAGGCGGGGAGGGGGGAGGCCTTGCCTGTTG
CGAGCGCGTCTTCTTGCAGCTCCATCCAACGCCATATGGCGGAGCTTTTG
TCGTTGGCCTTCTTACAAAGACTGCTCGAGTTGTGCGTGAATCAGAGGTA
TGGGGCATGAATGAATGAACGAATGAATGAGGACAAGCGTGTCTGCCTTC
CTGCTTCTTCTGACTTGCCATGCGCGTACCTATTTGCCCAGCAGCTAGAT
GGGCAAGTATCCCCACCATTCACGAGGTCGCACACCATGGATATTTGGTT
GCAAATGTTCCAGACCCGACGGCAAAGGGCGAGGAGGACCGCGGCCCACA
GGACCCAAACGTACCAGGGCTGCCCTCCCGATGTGATGGCGCGGAGTTTC
TTCATCATCATTTGTGGGTTGGGCCAGGTACGGTGCCGAGGCAGGGTGCA
GAGATAGATGTCCTGCTACTTGAGCTAGATTAGAACAGCCTCACCGCTAG
TTCCTCGTGTATAGTGCAGGTGGCATCCGCCTGCGGTGGGCGCGACCTCC
CTGTCGCGTCGGGAGTATTGTGGGCTTGGTTGGCCCCTTGTGATTCATGG
GAGGGGAGGGGTGACGACGCGTGGAGAGTGATACTAGATGTTGCTGCCTA
ACGAATGCTCATGTACGAACACTCGAACGACCTAAAAATACATACAAAGC
GCAAATGGGACAAGGGGCTGACCTTAAGCATAGCAGGCAGTCCTTTC
back to top

Coding sequence (CDS) from alignment at scaffold_4:454635..456031+

>mRNA_1965 ID=mRNA_1965|Name=jgi.p|Nanoce1779_2|578557|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_4:454635..456031+ (Nannochloropsis oceanica)
ATGCCCATCCTCGTTGCAAGCATCCTCGTCTTCCTCCACATTACCCTCCA
GCCGACTCCTCCCATGTCGTATTCTTGTGGTTTTTCTTCTACCATCCTCC
GCCTCTTCCTCCCCCTCCCTCTCCCCCTCCCCCTCCTCTTCCTCAATAGT
CTGAAACCGCTGCCTTCTTTTCTTCCTCTTCCTCCTCTGCTGCCCCTTCT
TTTTCTGAACCTGCTGTTCCGTCCCTCTCTGGAATGCTGCTGCTGTTGCT
GCTTCCTGTGCCATCACCTCCAAGTCTTCCAACTCCGGTATCTCTGA
back to top
Synonyms
Publications