jgi.p|Nanoce1779_2|578554, mRNA_1964 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578554
Unique NamemRNA_1964
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1358
Alignment locationscaffold_4:452350..453707 +

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Properties
Property NameValue
TranscriptId578640
TrackFilteredModels2
ProteinId578554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:452350..453707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578554gene_1964Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578554mRNA_1964-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1964CDS_1964Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1964 ID=mRNA_1964|Name=jgi.p|Nanoce1779_2|578554|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp
ACAGACCACGCAGGTGAGCATGGCGACGGAAGACACGACGACACCGGCAA
CTGCTACCAAGAAGCCGAGTGCGGATGGGAAGCCGGCCGTGGAAGATGAT
GAGGACCCCAAGCACGTCCCCGACATGGCCTTGGCCCAAGACCTCTACTT
GTTGGAGCTGGCGCAAAGTAAACCCGAGGAGGTGCCAGACGTGGCAGAGG
TGAGGACCCGAGTCCTGGCGTCGATCAAAGCGGACAAGGCCGAGCCCTTG
TACACCAGTGTGTGTGTCGAAAAGCTGGGGTGGCCCGTGGACGTCGCGTT
GCAAGCAGAGCTCAAAGCATCAAACGAGGCGGAGCTGTCAGGTATCGAGG
AGCAGCTGCGCGTGGCAACGGAAAGCTCGGGGGACATGGAGGTGCTCGAT
GCGCTAATTGCCCGCGAGAAGTTCTACGCCCGGATTGGAAATAAGACGGC
GGCCTTGGCGGCGGCGGATGAGATTTTGGCCAAGCCGAAGATTAGTACGG
GGAAGAAGATTGACGCGGTGATGGACAAGGTCCGTTTGGGTCTATTCTTC
CGTGACCCTGAGGCGACGAAGGAGAATTTGGAGAAGGCTAAAAAGCTGGT
GGAGGACGGCGGGGATTGGGATCGCCGGAATCGGTTGAAAGTTTACGAGG
CTTTGGCCTTGATCACTGCGAGGTCCCTGAAGAAGGCATCGGAGCTGCTG
TTAGATTGCATTGCGACATTCACATGCGTGGAGCTGGCGACTTACCGCCA
ATTTATTTTCTACGCGGTGGTCACGAATCTATTGTACCTGGAACGAACGA
AGCTGAAGAAAAAGCTTGTGGACGGGCCTGAAGTTATTGCGGTATTGAGG
GACTTGCCGGCGTTGGGGCGTTTGCTCAATGCATTGTATGATTGTGATTA
TCGCGCGTTCTTTCATGCTCTTGTAGAGGTGATACCTGATTTAACACGGG
ACCGATACACGGCGCCGCATGTGAGGATTGTGGTCCGAGAGTTGCGGGTG
TTGGTTTATTCGCAGTTCCTAGAGAGTTACAAGAGTGTGAGGCTGGCGTC
CATGGCTGAGTCTTTTGGCGTGGGGGTTGAATTCCTCGACAAAGAGTTAT
CACGTTTCATCGCCTCTGGGAGGTTGAGTGCGAAAATCGATAAGGTAGGG
GGGGTGGTCGAGACGAGTCGGCCTGATACCAAAAATGCCCAGTACCAGGA
GGTCGTGAAGGAGGGCGACTTGTTGCTGAACCGGTTGTCGAAATTAGCGA
GGATGGTTGATTTTTAAGTGATGGGGTGGGATACTGGTGATTGGGAGGAT
AGAGAGAGGGCGACTTGTTGCTGAACCGGTTGTCGAAATTAGCGAGGATG
GTTGATTT
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protein sequence of jgi.p|Nanoce1779_2|578554

>mRNA_1964-protein ID=mRNA_1964-protein|Name=jgi.p|Nanoce1779_2|578554|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MATEDTTTPATATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQS
KPEEVPDVAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKA
SNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAAD
EILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDW
DRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAV
VTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHA
LVEVIPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFG
VGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGD
LLLNRLSKLARMVDF*
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mRNA from alignment at scaffold_4:452350..453707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1964 ID=mRNA_1964|Name=jgi.p|Nanoce1779_2|578554|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp|location=Sequence derived from alignment at scaffold_4:452350..453707+ (Nannochloropsis oceanica)
ACAGACCACGCAGGTGAGCATGGCGACGGAAGACACGACGACACCGGCAA
CTGCTACCAAGAAGCCGAGTGCGGATGGGAAGCCGGCCGTGGAAGATGAT
GAGGACCCCAAGCACGTCCCCGACATGGCCTTGGCCCAAGACCTCTACTT
GTTGGAGCTGGCGCAAAGTAAACCCGAGGAGGTGCCAGACGTGGCAGAGG
TGAGGACCCGAGTCCTGGCGTCGATCAAAGCGGACAAGGCCGAGCCCTTG
TACACCAGTGTGTGTGTCGAAAAGCTGGGGTGGCCCGTGGACGTCGCGTT
GCAAGCAGAGCTCAAAGCATCAAACGAGGCGGAGCTGTCAGGTATCGAGG
AGCAGCTGCGCGTGGCAACGGAAAGCTCGGGGGACATGGAGGTGCTCGAT
GCGCTAATTGCCCGCGAGAAGTTCTACGCCCGGATTGGAAATAAGACGGC
GGCCTTGGCGGCGGCGGATGAGATTTTGGCCAAGCCGAAGATTAGTACGG
GGAAGAAGATTGACGCGGTGATGGACAAGGTCCGTTTGGGTCTATTCTTC
CGTGACCCTGAGGCGACGAAGGAGAATTTGGAGAAGGCTAAAAAGCTGGT
GGAGGACGGCGGGGATTGGGATCGCCGGAATCGGTTGAAAGTTTACGAGG
CTTTGGCCTTGATCACTGCGAGGTCCCTGAAGAAGGCATCGGAGCTGCTG
TTAGATTGCATTGCGACATTCACATGCGTGGAGCTGGCGACTTACCGCCA
ATTTATTTTCTACGCGGTGGTCACGAATCTATTGTACCTGGAACGAACGA
AGCTGAAGAAAAAGCTTGTGGACGGGCCTGAAGTTATTGCGGTATTGAGG
GACTTGCCGGCGTTGGGGCGTTTGCTCAATGCATTGTATGATTGTGATTA
TCGCGCGTTCTTTCATGCTCTTGTAGAGGTGATACCTGATTTAACACGGG
ACCGATACACGGCGCCGCATGTGAGGATTGTGGTCCGAGAGTTGCGGGTG
TTGGTTTATTCGCAGTTCCTAGAGAGTTACAAGAGTGTGAGGCTGGCGTC
CATGGCTGAGTCTTTTGGCGTGGGGGTTGAATTCCTCGACAAAGAGTTAT
CACGTTTCATCGCCTCTGGGAGGTTGAGTGCGAAAATCGATAAGGTAGGG
GGGGTGGTCGAGACGAGTCGGCCTGATACCAAAAATGCCCAGTACCAGGA
GGTCGTGAAGGAGGGCGACTTGTTGCTGAACCGGTTGTCGAAATTAGCGA
GGATGGTTGATTTTTAAGTGATGGGGTGGGATACTGGTGATTGGGAGGAT
AGAGAGAGGGCGACTTGTTGCTGAACCGGTTGTCGAAATTAGCGAGGATG
GTTGATTT
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Coding sequence (CDS) from alignment at scaffold_4:452350..453707+

>mRNA_1964 ID=mRNA_1964|Name=jgi.p|Nanoce1779_2|578554|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_4:452350..453707+ (Nannochloropsis oceanica)
ATGGCGACGGAAGACACGACGACACCGGCAACTGCTACCAAGAAGCCGAG
TGCGGATGGGAAGCCGGCCGTGGAAGATGATGAGGACCCCAAGCACGTCC
CCGACATGGCCTTGGCCCAAGACCTCTACTTGTTGGAGCTGGCGCAAAGT
AAACCCGAGGAGGTGCCAGACGTGGCAGAGGTGAGGACCCGAGTCCTGGC
GTCGATCAAAGCGGACAAGGCCGAGCCCTTGTACACCAGTGTGTGTGTCG
AAAAGCTGGGGTGGCCCGTGGACGTCGCGTTGCAAGCAGAGCTCAAAGCA
TCAAACGAGGCGGAGCTGTCAGGTATCGAGGAGCAGCTGCGCGTGGCAAC
GGAAAGCTCGGGGGACATGGAGGTGCTCGATGCGCTAATTGCCCGCGAGA
AGTTCTACGCCCGGATTGGAAATAAGACGGCGGCCTTGGCGGCGGCGGAT
GAGATTTTGGCCAAGCCGAAGATTAGTACGGGGAAGAAGATTGACGCGGT
GATGGACAAGGTCCGTTTGGGTCTATTCTTCCGTGACCCTGAGGCGACGA
AGGAGAATTTGGAGAAGGCTAAAAAGCTGGTGGAGGACGGCGGGGATTGG
GATCGCCGGAATCGGTTGAAAGTTTACGAGGCTTTGGCCTTGATCACTGC
GAGGTCCCTGAAGAAGGCATCGGAGCTGCTGTTAGATTGCATTGCGACAT
TCACATGCGTGGAGCTGGCGACTTACCGCCAATTTATTTTCTACGCGGTG
GTCACGAATCTATTGTACCTGGAACGAACGAAGCTGAAGAAAAAGCTTGT
GGACGGGCCTGAAGTTATTGCGGTATTGAGGGACTTGCCGGCGTTGGGGC
GTTTGCTCAATGCATTGTATGATTGTGATTATCGCGCGTTCTTTCATGCT
CTTGTAGAGGTGATACCTGATTTAACACGGGACCGATACACGGCGCCGCA
TGTGAGGATTGTGGTCCGAGAGTTGCGGGTGTTGGTTTATTCGCAGTTCC
TAGAGAGTTACAAGAGTGTGAGGCTGGCGTCCATGGCTGAGTCTTTTGGC
GTGGGGGTTGAATTCCTCGACAAAGAGTTATCACGTTTCATCGCCTCTGG
GAGGTTGAGTGCGAAAATCGATAAGGTAGGGGGGGTGGTCGAGACGAGTC
GGCCTGATACCAAAAATGCCCAGTACCAGGAGGTCGTGAAGGAGGGCGAC
TTGTTGCTGAACCGGTTGTCGAAATTAGCGAGGATGGTTGATTTTTAA
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Synonyms
Publications