jgi.p|Nanoce1779_2|289915, mRNA_1961 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|289915
Unique Name	mRNA_1961
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2696
Alignment location	scaffold_4:443419..446114 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	290001
Track	FilteredModels2
ProteinId	289915

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:443419..446114 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|289915	gene_1961	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|289915	mRNA_1961-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1961	CDS_1961	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:443419..446114+
coding sequence from alignment at scaffold_4:443419..446114+

mRNA sequence

>mRNA_1961 ID=mRNA_1961|Name=jgi.p|Nanoce1779_2|289915|organism=Nannochloropsis oceanica|type=mRNA|length=2696bp
GGAGGAGGGGGAGGTGGGGGAGGAGGAGGGCGTCGTCGTTAAGGGAGAAG
GGGAGGGGGGGGGAGGACGGGAGGGAGGAGACAGCGCCCGAACATGTCGC
CACCGAGATTGAGCAGCAGCTTATTGTAGAGGAAGAGGGAGGGAAGGAGG
GAGGGAAGGAGGAGGGGAAGAAGTACCGAGGGAATGCTGGATATGGGTAC
ATTCACTTCGAGAGCAACCCGCCCGCTCGGACCGCGATGAAGGCCTTGGA
GGGGAAGATTGTGGTGAAGGGGGAGGAAGAGAAGGAGGGCGACATAGTGT
TGAGGGTCGAATGGGCAAGGGGGGAGGGGGAGGAGGACGTGCGGGGAGAG
GAGAAGAAGGCAGGTCCTGGTGGTGGTGTTGCTGCTGCGACTGCGCCTGC
GAGAGAGGGAACGAAGGACAGTATCAACAATAAGGTGACGCTGTATGTGT
CACATCTACCGCTGGACACGACGAAAGAGGAGCTGATGGAACACTTTGAA
ACGTACGGGAAAGTTACCCGGGTCTGGATCTCGTTCGTGGACATGCCGGC
GAGGGCGAGCGGGAGGGAGGGAGGAAGGAAGGGGGGATGTGACTATGCGT
TCGTCTCGTTTGAGAGCGAGAAAGTGGTGCATGCCGCCATAGAAAAGGAG
CAAGCGAATCCGTGGGTAGTGAGAGGACATACCATAGAAGCCAAGCAAGC
AAGGGCAAGGCACGAGGGCCAGCAGCAGCAGCAGCAGCAGGGGAGGAAAG
GGGGGGAGAGGGAGAGGGGGGAGAGAGACAGAGGGAGAGACAGGGGGAGG
AGGAGGGGGGGGATGGAGGAAGGGGAGATGAGGTCACGGAGATCTGAAAG
AGGAGGAGAGAGAGCAGCCCCTTCTGGAAGGAAGACGAGGTTTAGCCAAG
GGCCCCCTCCTCCTTCTCTCCCTCCCCCGGGCCCTCCCCCTATGCCACCT
ACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCAACAGCAGCA
GCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGCAGGCCCCGT
ATTCCTTCCTGCCGGGAGGAGGCGGGGAGCGAGGAAGGGAGGGAGGAAGG
GTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGAGCGAGGAGA
AGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGGAAGTGGGGC
CGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGGCCTGCTGGA
GGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAGGAATGGAGA
AGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGAGGAGTCGCT
CCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGGGGGGGCGGA
TATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAGTCGGTACGG
CCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGGAGGTATA
GGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCTCCGCAGCTT
TTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCTGCCGCAATC
CACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACCACCACCACC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCGCCGCCTCAA
GGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATATCCCGCACC
CGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCCCTCCTCAGC
AGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGCTACCTGCAG
CAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCCTCCCTCTCC
CTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCCCTCGGCCCA
TGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAGCAGCTGCAG
CCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCCGCCTCCTCC
CCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCACTACCTCCTT
ATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAGAATGGACAC
CATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCAGTACTATTC
GCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTTACGCCCATCCCC
AGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAGCACCACCAACAG
CAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGATGGTGGTGGTGG
TGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGGGAGGAGGAGGGA
ATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGTGGACGTGATAAA
AGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACGGAGCGGAGACCA
ACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTCTGAAGCACCAGC
AGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAGCGAGGAGTAGGA
AAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCGCGATTTCGATGC
ACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAATAGATAAT

protein sequence of jgi.p|Nanoce1779_2|289915

>mRNA_1961-protein ID=mRNA_1961-protein|Name=jgi.p|Nanoce1779_2|289915|organism=Nannochloropsis oceanica|type=polypeptide|length=777bp
MKALEGKIVVKGEEEKEGDIVLRVEWARGEGEEDVRGEEKKAGPGGGVAA
ATAPAREGTKDSINNKVTLYVSHLPLDTTKEELMEHFETYGKVTRVWISF
VDMPARASGREGGRKGGCDYAFVSFESEKVVHAAIEKEQANPWVVRGHTI
EAKQARARHEGQQQQQQQGRKGGERERGERDRGRDRGRRRGGMEEGEMRS
RRSERGGERAAPSGRKTRFSQGPPPPSLPPPGPPPMPPTPGMVLLPAQQL
FQQQQQLLQQQQLLLQGQQAPYSFLPGGGGERGREGGRVGYENDRKRGRD
RERGEGRGGGDGWEGGDWEVGPNKRRSFRGEGKYGPAGGMGAGGYSEDDG
RRNGEGGRGGETPYRSRGRSRSPPSRERRGGSSRGGGGYVGGSRRSPERD
LSRYGRGGGGGGGGGGGGGRYRRDDDFHPPRGPAPPQLLPAVYVPQQQQQ
LLPQSTMAFGPPIVSYPHHHHQQQQQQQQQQQQPPPPQGPPPPSWVPQGQ
TYPAPAMAPAPAYLPAPPPPQQQQQREPVYQQQQGYLQQQQPQQMLQQQP
PPPSPFPHQQQTVQSAQVPRPMSMGAKKLLPPGAKQLQPPQQPQQLQQQH
QPPPPQQQQQQQQQPPQPLPPYYAVSVGQPYLPPQNGHHQQQQQQQQQQQ
PQYYSQQPQQAPMPPPGYAHPQHAYAPPPQQPQQHHQQQHPLPAYEDGAT
DGGGGAGGGDGGGGGRGGGGGNRDRPRGRPRGGRGRDKRDSERGTRGGGG
RSGDQPPPQRGEKPYDFLKHQQWRGE*

mRNA from alignment at scaffold_4:443419..446114+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1961 ID=mRNA_1961|Name=jgi.p|Nanoce1779_2|289915|organism=Nannochloropsis oceanica|type=mRNA|length=2696bp|location=Sequence derived from alignment at scaffold_4:443419..446114+ (Nannochloropsis oceanica)
GGAGGAGGGGGAGGTGGGGGAGGAGGAGGGCGTCGTCGTTAAGGGAGAAG
GGGAGGGGGGGGGAGGACGGGAGGGAGGAGACAGCGCCCGAACATGTCGC
CACCGAGATTGAGCAGCAGCTTATTGTAGAGGAAGAGGGAGGGAAGGAGG
GAGGGAAGGAGGAGGGGAAGAAGTACCGAGGGAATGCTGGATATGGGTAC
ATTCACTTCGAGAGCAACCCGCCCGCTCGGACCGCGATGAAGGCCTTGGA
GGGGAAGATTGTGGTGAAGGGGGAGGAAGAGAAGGAGGGCGACATAGTGT
TGAGGGTCGAATGGGCAAGGGGGGAGGGGGAGGAGGACGTGCGGGGAGAG
GAGAAGAAGGCAGGTCCTGGTGGTGGTGTTGCTGCTGCGACTGCGCCTGC
GAGAGAGGGAACGAAGGACAGTATCAACAATAAGGTGACGCTGTATGTGT
CACATCTACCGCTGGACACGACGAAAGAGGAGCTGATGGAACACTTTGAA
ACGTACGGGAAAGTTACCCGGGTCTGGATCTCGTTCGTGGACATGCCGGC
GAGGGCGAGCGGGAGGGAGGGAGGAAGGAAGGGGGGATGTGACTATGCGT
TCGTCTCGTTTGAGAGCGAGAAAGTGGTGCATGCCGCCATAGAAAAGGAG
CAAGCGAATCCGTGGGTAGTGAGAGGACATACCATAGAAGCCAAGCAAGC
AAGGGCAAGGCACGAGGGCCAGCAGCAGCAGCAGCAGCAGGGGAGGAAAG
GGGGGGAGAGGGAGAGGGGGGAGAGAGACAGAGGGAGAGACAGGGGGAGG
AGGAGGGGGGGGATGGAGGAAGGGGAGATGAGGTCACGGAGATCTGAAAG
AGGAGGAGAGAGAGCAGCCCCTTCTGGAAGGAAGACGAGGTTTAGCCAAG
GGCCCCCTCCTCCTTCTCTCCCTCCCCCGGGCCCTCCCCCTATGCCACCT
ACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCAACAGCAGCA
GCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGCAGGCCCCGT
ATTCCTTCCTGCCGGGAGGAGGCGGGGAGCGAGGAAGGGAGGGAGGAAGG
GTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGAGCGAGGAGA
AGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGGAAGTGGGGC
CGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGGCCTGCTGGA
GGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAGGAATGGAGA
AGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGAGGAGTCGCT
CCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGGGGGGGCGGA
TATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAGTCGGTACGG
CCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGGAGGTATA
GGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCTCCGCAGCTT
TTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCTGCCGCAATC
CACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACCACCACCACC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCGCCGCCTCAA
GGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATATCCCGCACC
CGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCCCTCCTCAGC
AGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGCTACCTGCAG
CAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCCTCCCTCTCC
CTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCCCTCGGCCCA
TGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAGCAGCTGCAG
CCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCCGCCTCCTCC
CCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCACTACCTCCTT
ATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAGAATGGACAC
CATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCAGTACTATTC
GCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTTACGCCCATCCCC
AGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAGCACCACCAACAG
CAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGATGGTGGTGGTGG
TGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGGGAGGAGGAGGGA
ATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGTGGACGTGATAAA
AGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACGGAGCGGAGACCA
ACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTCTGAAGCACCAGC
AGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAGCGAGGAGTAGGA
AAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCGCGATTTCGATGC
ACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAATAGATAAT

Coding sequence (CDS) from alignment at scaffold_4:443419..446114+

>mRNA_1961 ID=mRNA_1961|Name=jgi.p|Nanoce1779_2|289915|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_4:443419..446114+ (Nannochloropsis oceanica)
ATGAAGGCCTTGGAGGGGAAGATTGTGGTGAAGGGGGAGGAAGAGAAGGA
GGGCGACATAGTGTTGAGGGTCGAATGGGCAAGGGGGGAGGGGGAGGAGG
ACGTGCGGGGAGAGGAGAAGAAGGCAGGTCCTGGTGGTGGTGTTGCTGCT
GCGACTGCGCCTGCGAGAGAGGGAACGAAGGACAGTATCAACAATAAGGT
GACGCTGTATGTGTCACATCTACCGCTGGACACGACGAAAGAGGAGCTGA
TGGAACACTTTGAAACGTACGGGAAAGTTACCCGGGTCTGGATCTCGTTC
GTGGACATGCCGGCGAGGGCGAGCGGGAGGGAGGGAGGAAGGAAGGGGGG
ATGTGACTATGCGTTCGTCTCGTTTGAGAGCGAGAAAGTGGTGCATGCCG
CCATAGAAAAGGAGCAAGCGAATCCGTGGGTAGTGAGAGGACATACCATA
GAAGCCAAGCAAGCAAGGGCAAGGCACGAGGGCCAGCAGCAGCAGCAGCA
GCAGGGGAGGAAAGGGGGGGAGAGGGAGAGGGGGGAGAGAGACAGAGGGA
GAGACAGGGGGAGGAGGAGGGGGGGGATGGAGGAAGGGGAGATGAGGTCA
CGGAGATCTGAAAGAGGAGGAGAGAGAGCAGCCCCTTCTGGAAGGAAGAC
GAGGTTTAGCCAAGGGCCCCCTCCTCCTTCTCTCCCTCCCCCGGGCCCTC
CCCCTATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTT
TTTCAACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGG
GCAGCAGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGCGAGGAA
GGGAGGGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGAT
CGCGAGCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGA
TTGGGAAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAAT
ATGGGCCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGA
CGAAGGAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAG
GGGGAGGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAA
GGGGGGGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGAT
TTAAGTCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGG
AGGAGGGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCG
CCCCTCCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAG
CTGCTGCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCC
CCACCACCACCACCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGC
CGCCGCCGCCTCAAGGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAA
ACATATCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCC
TCCCCCTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGC
AAGGCTACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCA
CCCCCTCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCA
GGTCCCTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCG
CCAAGCAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCAT
CAGCCGCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACA
GCCACTACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCAC
CTCAGAATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CCGCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGG
TTACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGC
AGCACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACT
GATGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGG
GGGAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCC
GTGGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGA
CGGAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTT
TCTGAAGCACCAGCAGTGGCGGGGGGAGTGA

Synonyms

Publications