jgi.p|Nanoce1779_2|524745, mRNA_1960 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524745
Unique NamemRNA_1960
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length534
Alignment locationscaffold_4:442997..443530 +

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Properties
Property NameValue
TranscriptId524831
TrackFilteredModels2
ProteinId524745
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:442997..443530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524745gene_1960Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524745mRNA_1960-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1960CDS_1960Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1960 ID=mRNA_1960|Name=jgi.p|Nanoce1779_2|524745|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
ATGAAAGACCGTCGTTCTAGGCAATTGAAAGGCTATGCCTTTGTGCGTTT
CAAGACGAGTGAGGAGGCGGGAAGAGCGCAGGAGGAATTGACCGGATATG
TGTTGAACGGGAAGGCCTTGGAGGTGAACTCGTGCGAGGCAAATAAGAGG
CTCAAGGTGAGCAATCTGGACAGGAAGTGGACGCCAGAAATATTTAAGAA
TTTGATGGAAAAGGCCTTGCTGCCGTTTCCGGGGGTGGTGTTGCTGGAGC
TGAAGGAAGCAGAGGCGGGAGGGAAGGAGGAAGAGAAGTGGAAGGGAAAG
AAGGGTGGGAGGGTTGGCAAATATGAGGACGAATGGAAAGAGAATGTGAA
AGAGAAGGAGAGGGGAAGAGGGCAGAAAAATGCTATGAAAGTGGAGGAGG
AGGAGCAGGAGGAGGGAGAGGTGGAGGAGGGGGAGGTGGGGGAGGAGGAG
GGCGTCGTCGTTAAGGGAGAAGGGGAGGGGGGGGGAGGACGGGAGGGAGG
AGACAGCGCCCGAACATGTCGCCACCGAGATTGA
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protein sequence of jgi.p|Nanoce1779_2|524745

>mRNA_1960-protein ID=mRNA_1960-protein|Name=jgi.p|Nanoce1779_2|524745|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKR
LKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKEAEAGGKEEEKWKGK
KGGRVGKYEDEWKENVKEKERGRGQKNAMKVEEEEQEEGEVEEGEVGEEE
GVVVKGEGEGGGGREGGDSARTCRHRD*
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mRNA from alignment at scaffold_4:442997..443530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1960 ID=mRNA_1960|Name=jgi.p|Nanoce1779_2|524745|organism=Nannochloropsis oceanica|type=mRNA|length=534bp|location=Sequence derived from alignment at scaffold_4:442997..443530+ (Nannochloropsis oceanica)
ATGAAAGACCGTCGTTCTAGGCAATTGAAAGGCTATGCCTTTGTGCGTTT
CAAGACGAGTGAGGAGGCGGGAAGAGCGCAGGAGGAATTGACCGGATATG
TGTTGAACGGGAAGGCCTTGGAGGTGAACTCGTGCGAGGCAAATAAGAGG
CTCAAGGTGAGCAATCTGGACAGGAAGTGGACGCCAGAAATATTTAAGAA
TTTGATGGAAAAGGCCTTGCTGCCGTTTCCGGGGGTGGTGTTGCTGGAGC
TGAAGGAAGCAGAGGCGGGAGGGAAGGAGGAAGAGAAGTGGAAGGGAAAG
AAGGGTGGGAGGGTTGGCAAATATGAGGACGAATGGAAAGAGAATGTGAA
AGAGAAGGAGAGGGGAAGAGGGCAGAAAAATGCTATGAAAGTGGAGGAGG
AGGAGCAGGAGGAGGGAGAGGTGGAGGAGGGGGAGGTGGGGGAGGAGGAG
GGCGTCGTCGTTAAGGGAGAAGGGGAGGGGGGGGGAGGACGGGAGGGAGG
AGACAGCGCCCGAACATGTCGCCACCGAGATTGA
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Coding sequence (CDS) from alignment at scaffold_4:442997..443530+

>mRNA_1960 ID=mRNA_1960|Name=jgi.p|Nanoce1779_2|524745|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_4:442997..443530+ (Nannochloropsis oceanica)
ATGAAAGACCGTCGTTCTAGGCAATTGAAAGGCTATGCCTTTGTGCGTTT
CAAGACGAGTGAGGAGGCGGGAAGAGCGCAGGAGGAATTGACCGGATATG
TGTTGAACGGGAAGGCCTTGGAGGTGAACTCGTGCGAGGCAAATAAGAGG
CTCAAGGTGAGCAATCTGGACAGGAAGTGGACGCCAGAAATATTTAAGAA
TTTGATGGAAAAGGCCTTGCTGCCGTTTCCGGGGGTGGTGTTGCTGGAGC
TGAAGGAAGCAGAGGCGGGAGGGAAGGAGGAAGAGAAGTGGAAGGGAAAG
AAGGGTGGGAGGGTTGGCAAATATGAGGACGAATGGAAAGAGAATGTGAA
AGAGAAGGAGAGGGGAAGAGGGCAGAAAAATGCTATGAAAGTGGAGGAGG
AGGAGCAGGAGGAGGGAGAGGTGGAGGAGGGGGAGGTGGGGGAGGAGGAG
GGCGTCGTCGTTAAGGGAGAAGGGGAGGGGGGGGGAGGACGGGAGGGAGG
AGACAGCGCCCGAACATGTCGCCACCGAGATTGA
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Synonyms
Publications