jgi.p|Nanoce1779_2|550825, mRNA_196 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550825
Unique NamemRNA_196
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1412
Alignment locationscaffold_3:490384..491795 +

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Properties
Property NameValue
TranscriptId550911
TrackFilteredModels2
ProteinId550825
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:490384..491795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550825gene_196Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550825mRNA_196-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_196CDS_196Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_196 ID=mRNA_196|Name=jgi.p|Nanoce1779_2|550825|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
GGATCGTCATGATGGGGAATCGCTTCTTTAAGAGAGCATATGTACGTGGT
TGACTGTGTGTGGCTGCTTTTCTCACCCTCACCCTCCCGTCCCCTCCACT
TTGACACACACACAGCGTGTCTGAGGACAAAAGCGCACTAGGCTCGGGCA
TCAGCCCATTTACACACACTCGGCAGGGATGGCAGCACCGCGCAAGACTG
ACCATTGCTCGGGCTTGGACACAAAGCTCGACCTCCCCCTAATCCAAGAC
GCAGCCATGACCATACGACCCTTAGTGCACCGCACTCCCGTCCTACGGTG
CCAAGCCATTGAGACAGAAAGCCTTGCTGCTGCCCATTCCGTGTCAGTCA
CCCACCGGGAGCTATTTTTCAAATGCGAGCTCTTCCAAAAAACGGGGTCA
TTCAAGGTCCGCGGGGCCCTCAACGCGGTGGCCCACTTGCCTCCCACTGT
CACAGACGTCGTCACTCACAGCAGCGGAAACCATGCTCAAGCTCTTGCAT
GGGCAGCACGTGCTAAAGGCCTTAATGCCCACATTGTTATGCCCCGGACA
GCCCCCGCTGTCAAGGTAAAAGCTGTGAAAGGGTACGGGGGCAAGGTCTA
TCTGTGCGAGCCGACGGTAGAGGCCCGTTGGGCCATGGCAGCCGAGCTAG
TGGGCTCAACAGGCGGGGCATTGGTGCATCCTTCCGATGACTACAATGTG
ATGGCAGGCCAAGGAACTGTAGCCCTGGAATTTTTAGAGCAGGTCAAGGA
GGAGACGGGGGGGGAGGAACTGGACGCGTTGATCATTCCGATTGGAGGGG
GTGGGTTATTGGGAGGCATGGCCGTGGCAGCTAAGACCATGCGGCCGGAT
ATCAAGATAATAGGTGCAGAGCCCGCAGTAGTTGATGATGCGGCTAGGTC
CAAGGCGACGGGCGTGTTGTGTTTACACCCGACGCCGCCTCCACGGAGTA
TTGCTGATGGGCTGTTGACGGTGTTGGGAAAGAAAACGTTTCCGATAGTG
TCGTCCGATAAGGTGGATGCGATTTTGACCGTATCGGAGAGGGAGATCGC
CCGGGCGATGCGTCTTGTGTATGAGAGGATGAAGCTGGTGATTGAGCCGA
GTGCGGGGGTGGGTGTGGCTGTGGCTTTGAGTTGCAAGAAATTAAATGCG
GTGCTGGGGATGGAGTGTCGGAGAGTGGGCATTGTCTTATGTGGTGGCAA
TGTAGACATAAGTGAAATGGAGGAGGTTTGGCGGTTGGCGGCTGAGGAGG
AAGAAGAGGAAGAGAGGGAGGAAGATGAGATTAACGGGCATAAGAGCAGT
AGTAGTAGTAGTTAGTAATGCGGGAGCAGGGGTAGAAGGCGTTAGATGTC
AGAAAGATGTTTAGTCTAGCAGACAAGAGGTAAATGGATAACTGCAACGA
ACGATTGGTTGT
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protein sequence of jgi.p|Nanoce1779_2|550825

>mRNA_196-protein ID=mRNA_196-protein|Name=jgi.p|Nanoce1779_2|550825|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MAAPRKTDHCSGLDTKLDLPLIQDAAMTIRPLVHRTPVLRCQAIETESLA
AAHSVSVTHRELFFKCELFQKTGSFKVRGALNAVAHLPPTVTDVVTHSSG
NHAQALAWAARAKGLNAHIVMPRTAPAVKVKAVKGYGGKVYLCEPTVEAR
WAMAAELVGSTGGALVHPSDDYNVMAGQGTVALEFLEQVKEETGGEELDA
LIIPIGGGGLLGGMAVAAKTMRPDIKIIGAEPAVVDDAARSKATGVLCLH
PTPPPRSIADGLLTVLGKKTFPIVSSDKVDAILTVSEREIARAMRLVYER
MKLVIEPSAGVGVAVALSCKKLNAVLGMECRRVGIVLCGGNVDISEMEEV
WRLAAEEEEEEEREEDEINGHKSSSSSS*
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mRNA from alignment at scaffold_3:490384..491795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_196 ID=mRNA_196|Name=jgi.p|Nanoce1779_2|550825|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp|location=Sequence derived from alignment at scaffold_3:490384..491795+ (Nannochloropsis oceanica)
GGATCGTCATGATGGGGAATCGCTTCTTTAAGAGAGCATATGTACGTGGT
TGACTGTGTGTGGCTGCTTTTCTCACCCTCACCCTCCCGTCCCCTCCACT
TTGACACACACACAGCGTGTCTGAGGACAAAAGCGCACTAGGCTCGGGCA
TCAGCCCATTTACACACACTCGGCAGGGATGGCAGCACCGCGCAAGACTG
ACCATTGCTCGGGCTTGGACACAAAGCTCGACCTCCCCCTAATCCAAGAC
GCAGCCATGACCATACGACCCTTAGTGCACCGCACTCCCGTCCTACGGTG
CCAAGCCATTGAGACAGAAAGCCTTGCTGCTGCCCATTCCGTGTCAGTCA
CCCACCGGGAGCTATTTTTCAAATGCGAGCTCTTCCAAAAAACGGGGTCA
TTCAAGGTCCGCGGGGCCCTCAACGCGGTGGCCCACTTGCCTCCCACTGT
CACAGACGTCGTCACTCACAGCAGCGGAAACCATGCTCAAGCTCTTGCAT
GGGCAGCACGTGCTAAAGGCCTTAATGCCCACATTGTTATGCCCCGGACA
GCCCCCGCTGTCAAGGTAAAAGCTGTGAAAGGGTACGGGGGCAAGGTCTA
TCTGTGCGAGCCGACGGTAGAGGCCCGTTGGGCCATGGCAGCCGAGCTAG
TGGGCTCAACAGGCGGGGCATTGGTGCATCCTTCCGATGACTACAATGTG
ATGGCAGGCCAAGGAACTGTAGCCCTGGAATTTTTAGAGCAGGTCAAGGA
GGAGACGGGGGGGGAGGAACTGGACGCGTTGATCATTCCGATTGGAGGGG
GTGGGTTATTGGGAGGCATGGCCGTGGCAGCTAAGACCATGCGGCCGGAT
ATCAAGATAATAGGTGCAGAGCCCGCAGTAGTTGATGATGCGGCTAGGTC
CAAGGCGACGGGCGTGTTGTGTTTACACCCGACGCCGCCTCCACGGAGTA
TTGCTGATGGGCTGTTGACGGTGTTGGGAAAGAAAACGTTTCCGATAGTG
TCGTCCGATAAGGTGGATGCGATTTTGACCGTATCGGAGAGGGAGATCGC
CCGGGCGATGCGTCTTGTGTATGAGAGGATGAAGCTGGTGATTGAGCCGA
GTGCGGGGGTGGGTGTGGCTGTGGCTTTGAGTTGCAAGAAATTAAATGCG
GTGCTGGGGATGGAGTGTCGGAGAGTGGGCATTGTCTTATGTGGTGGCAA
TGTAGACATAAGTGAAATGGAGGAGGTTTGGCGGTTGGCGGCTGAGGAGG
AAGAAGAGGAAGAGAGGGAGGAAGATGAGATTAACGGGCATAAGAGCAGT
AGTAGTAGTAGTTAGTAATGCGGGAGCAGGGGTAGAAGGCGTTAGATGTC
AGAAAGATGTTTAGTCTAGCAGACAAGAGGTAAATGGATAACTGCAACGA
ACGATTGGTTGT
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Coding sequence (CDS) from alignment at scaffold_3:490384..491795+

>mRNA_196 ID=mRNA_196|Name=jgi.p|Nanoce1779_2|550825|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_3:490384..491795+ (Nannochloropsis oceanica)
ATGGCAGCACCGCGCAAGACTGACCATTGCTCGGGCTTGGACACAAAGCT
CGACCTCCCCCTAATCCAAGACGCAGCCATGACCATACGACCCTTAGTGC
ACCGCACTCCCGTCCTACGGTGCCAAGCCATTGAGACAGAAAGCCTTGCT
GCTGCCCATTCCGTGTCAGTCACCCACCGGGAGCTATTTTTCAAATGCGA
GCTCTTCCAAAAAACGGGGTCATTCAAGGTCCGCGGGGCCCTCAACGCGG
TGGCCCACTTGCCTCCCACTGTCACAGACGTCGTCACTCACAGCAGCGGA
AACCATGCTCAAGCTCTTGCATGGGCAGCACGTGCTAAAGGCCTTAATGC
CCACATTGTTATGCCCCGGACAGCCCCCGCTGTCAAGGTAAAAGCTGTGA
AAGGGTACGGGGGCAAGGTCTATCTGTGCGAGCCGACGGTAGAGGCCCGT
TGGGCCATGGCAGCCGAGCTAGTGGGCTCAACAGGCGGGGCATTGGTGCA
TCCTTCCGATGACTACAATGTGATGGCAGGCCAAGGAACTGTAGCCCTGG
AATTTTTAGAGCAGGTCAAGGAGGAGACGGGGGGGGAGGAACTGGACGCG
TTGATCATTCCGATTGGAGGGGGTGGGTTATTGGGAGGCATGGCCGTGGC
AGCTAAGACCATGCGGCCGGATATCAAGATAATAGGTGCAGAGCCCGCAG
TAGTTGATGATGCGGCTAGGTCCAAGGCGACGGGCGTGTTGTGTTTACAC
CCGACGCCGCCTCCACGGAGTATTGCTGATGGGCTGTTGACGGTGTTGGG
AAAGAAAACGTTTCCGATAGTGTCGTCCGATAAGGTGGATGCGATTTTGA
CCGTATCGGAGAGGGAGATCGCCCGGGCGATGCGTCTTGTGTATGAGAGG
ATGAAGCTGGTGATTGAGCCGAGTGCGGGGGTGGGTGTGGCTGTGGCTTT
GAGTTGCAAGAAATTAAATGCGGTGCTGGGGATGGAGTGTCGGAGAGTGG
GCATTGTCTTATGTGGTGGCAATGTAGACATAAGTGAAATGGAGGAGGTT
TGGCGGTTGGCGGCTGAGGAGGAAGAAGAGGAAGAGAGGGAGGAAGATGA
GATTAACGGGCATAAGAGCAGTAGTAGTAGTAGTTAG
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Synonyms
Publications