jgi.p|Nanoce1779_2|578539, mRNA_1959 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578539
Unique NamemRNA_1959
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1292
Alignment locationscaffold_4:440717..442008 +

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Properties
Property NameValue
TranscriptId578625
TrackFilteredModels2
ProteinId578539
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:440717..442008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578539gene_1959Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578539mRNA_1959-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1959CDS_1959Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1959 ID=mRNA_1959|Name=jgi.p|Nanoce1779_2|578539|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp
AGGCACATTATCCTGGTCATCATGGATACATCGTCCACCTCGGCTGTCCT
GCGGTCGCTTGTAGAGCGCGCCGTGATCAGCAAGGGCCGCCTGTCAACAT
CCTCCTTTTCCTCGCCCTTGGTTCTCCTCCATGCCGACCATACGGCGTCG
TCGTCCTCCCCCTCTTCCACCCACAAAGCCCAGGCATTTTCACGACATGC
CCACTTTTTGTACCACCATTTGCTGGGCAAGCTTCGGGACTCAACGCAAT
ACCGTGGTGTCGTCTTGGTGGGATTGGAGAACCCACCACGCATCATGTAT
CAATCAGACGAGGAGGGCCGGCAGGAGGGAGTGCTTGCGGCCTTGGATGG
TGTTACGATGCCAAATAGCGAGAGTGAAAGCACTATGCATATGGTGCCGC
CATTGGACTTGTCGTCGCCGGAGGCCTTTGTGGAGGACATCCGACGCGCC
TTGCCCTCGTCGCCATCCCCGTCCACACCGTCAAAAAGCAGGAGCAAAGA
GGAGGGTAAGGAGGACAAGGAGGGAAATGACAATGGGGGAAATGACAATG
GGGAGGAGGAGGACTTCGATGAAGACAGCCAGCAGAGTATTGCGCTGGGC
ATCGATTCCCTCAATATGCTATCATACCAATTAAATAGCATGCCGGCCAC
CGTCATCGCCTTGCGGAAGCTCCTCCTCCACAGCAGCAGCGGCCCCTTCC
TCTCTCCCCTCCTCGCGGTCCTTCACTCCGAAGGCAACAATGGACGTTCA
TTACTTTCCCAAACCTGGCGTCTTGCTCTCGAAGATCTCGCTACGACTAA
CGTGTATCTGTATCCTCAAGATGAGGTGTCGGGCCGATGCCTTGTGTTGC
GAAAAAGCGCCTCGGGCAAGGTGCACGAGGATTATGAGAGTTATGCCATC
GATGGTAATGATGGGACCGTGCGTTTTACCTCTAGTTCCTCTACTTCCAT
TGCCGCTACTTCAAAACAAGACAAGAGTGTCACAGTGAAAGGCGCTTCTA
TGGTAGCGTTGACGTCAGCGAACGACAGCAGCAGTAAAAAGGAAGCAGCT
TTCCTGGAAAGCTTGCCTTTCCGCCTTTTCCTCACGGAGCAAGAACGGGC
CATGCGAGGTCAGGTAGTCCTACCGTATGAGCGGCAACGAAACAGTGGGG
GGCAAACCATCATGAATCAACCACGACAGCCGCTTATTTATCACGAGGTG
GAGGGAGGGGACGAGGACGAGGATGAGGAGGAGTACTACGACGACATCGA
CGATGATTTGGACTTGTAACGACAGAGAAAATTATGGTTTAG
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protein sequence of jgi.p|Nanoce1779_2|578539

>mRNA_1959-protein ID=mRNA_1959-protein|Name=jgi.p|Nanoce1779_2|578539|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MDTSSTSAVLRSLVERAVISKGRLSTSSFSSPLVLLHADHTASSSSPSST
HKAQAFSRHAHFLYHHLLGKLRDSTQYRGVVLVGLENPPRIMYQSDEEGR
QEGVLAALDGVTMPNSESESTMHMVPPLDLSSPEAFVEDIRRALPSSPSP
STPSKSRSKEEGKEDKEGNDNGGNDNGEEEDFDEDSQQSIALGIDSLNML
SYQLNSMPATVIALRKLLLHSSSGPFLSPLLAVLHSEGNNGRSLLSQTWR
LALEDLATTNVYLYPQDEVSGRCLVLRKSASGKVHEDYESYAIDGNDGTV
RFTSSSSTSIAATSKQDKSVTVKGASMVALTSANDSSSKKEAAFLESLPF
RLFLTEQERAMRGQVVLPYERQRNSGGQTIMNQPRQPLIYHEVEGGDEDE
DEEEYYDDIDDDLDL*
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mRNA from alignment at scaffold_4:440717..442008+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1959 ID=mRNA_1959|Name=jgi.p|Nanoce1779_2|578539|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp|location=Sequence derived from alignment at scaffold_4:440717..442008+ (Nannochloropsis oceanica)
AGGCACATTATCCTGGTCATCATGGATACATCGTCCACCTCGGCTGTCCT
GCGGTCGCTTGTAGAGCGCGCCGTGATCAGCAAGGGCCGCCTGTCAACAT
CCTCCTTTTCCTCGCCCTTGGTTCTCCTCCATGCCGACCATACGGCGTCG
TCGTCCTCCCCCTCTTCCACCCACAAAGCCCAGGCATTTTCACGACATGC
CCACTTTTTGTACCACCATTTGCTGGGCAAGCTTCGGGACTCAACGCAAT
ACCGTGGTGTCGTCTTGGTGGGATTGGAGAACCCACCACGCATCATGTAT
CAATCAGACGAGGAGGGCCGGCAGGAGGGAGTGCTTGCGGCCTTGGATGG
TGTTACGATGCCAAATAGCGAGAGTGAAAGCACTATGCATATGGTGCCGC
CATTGGACTTGTCGTCGCCGGAGGCCTTTGTGGAGGACATCCGACGCGCC
TTGCCCTCGTCGCCATCCCCGTCCACACCGTCAAAAAGCAGGAGCAAAGA
GGAGGGTAAGGAGGACAAGGAGGGAAATGACAATGGGGGAAATGACAATG
GGGAGGAGGAGGACTTCGATGAAGACAGCCAGCAGAGTATTGCGCTGGGC
ATCGATTCCCTCAATATGCTATCATACCAATTAAATAGCATGCCGGCCAC
CGTCATCGCCTTGCGGAAGCTCCTCCTCCACAGCAGCAGCGGCCCCTTCC
TCTCTCCCCTCCTCGCGGTCCTTCACTCCGAAGGCAACAATGGACGTTCA
TTACTTTCCCAAACCTGGCGTCTTGCTCTCGAAGATCTCGCTACGACTAA
CGTGTATCTGTATCCTCAAGATGAGGTGTCGGGCCGATGCCTTGTGTTGC
GAAAAAGCGCCTCGGGCAAGGTGCACGAGGATTATGAGAGTTATGCCATC
GATGGTAATGATGGGACCGTGCGTTTTACCTCTAGTTCCTCTACTTCCAT
TGCCGCTACTTCAAAACAAGACAAGAGTGTCACAGTGAAAGGCGCTTCTA
TGGTAGCGTTGACGTCAGCGAACGACAGCAGCAGTAAAAAGGAAGCAGCT
TTCCTGGAAAGCTTGCCTTTCCGCCTTTTCCTCACGGAGCAAGAACGGGC
CATGCGAGGTCAGGTAGTCCTACCGTATGAGCGGCAACGAAACAGTGGGG
GGCAAACCATCATGAATCAACCACGACAGCCGCTTATTTATCACGAGGTG
GAGGGAGGGGACGAGGACGAGGATGAGGAGGAGTACTACGACGACATCGA
CGATGATTTGGACTTGTAACGACAGAGAAAATTATGGTTTAG
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Coding sequence (CDS) from alignment at scaffold_4:440717..442008+

>mRNA_1959 ID=mRNA_1959|Name=jgi.p|Nanoce1779_2|578539|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_4:440717..442008+ (Nannochloropsis oceanica)
ATGGATACATCGTCCACCTCGGCTGTCCTGCGGTCGCTTGTAGAGCGCGC
CGTGATCAGCAAGGGCCGCCTGTCAACATCCTCCTTTTCCTCGCCCTTGG
TTCTCCTCCATGCCGACCATACGGCGTCGTCGTCCTCCCCCTCTTCCACC
CACAAAGCCCAGGCATTTTCACGACATGCCCACTTTTTGTACCACCATTT
GCTGGGCAAGCTTCGGGACTCAACGCAATACCGTGGTGTCGTCTTGGTGG
GATTGGAGAACCCACCACGCATCATGTATCAATCAGACGAGGAGGGCCGG
CAGGAGGGAGTGCTTGCGGCCTTGGATGGTGTTACGATGCCAAATAGCGA
GAGTGAAAGCACTATGCATATGGTGCCGCCATTGGACTTGTCGTCGCCGG
AGGCCTTTGTGGAGGACATCCGACGCGCCTTGCCCTCGTCGCCATCCCCG
TCCACACCGTCAAAAAGCAGGAGCAAAGAGGAGGGTAAGGAGGACAAGGA
GGGAAATGACAATGGGGGAAATGACAATGGGGAGGAGGAGGACTTCGATG
AAGACAGCCAGCAGAGTATTGCGCTGGGCATCGATTCCCTCAATATGCTA
TCATACCAATTAAATAGCATGCCGGCCACCGTCATCGCCTTGCGGAAGCT
CCTCCTCCACAGCAGCAGCGGCCCCTTCCTCTCTCCCCTCCTCGCGGTCC
TTCACTCCGAAGGCAACAATGGACGTTCATTACTTTCCCAAACCTGGCGT
CTTGCTCTCGAAGATCTCGCTACGACTAACGTGTATCTGTATCCTCAAGA
TGAGGTGTCGGGCCGATGCCTTGTGTTGCGAAAAAGCGCCTCGGGCAAGG
TGCACGAGGATTATGAGAGTTATGCCATCGATGGTAATGATGGGACCGTG
CGTTTTACCTCTAGTTCCTCTACTTCCATTGCCGCTACTTCAAAACAAGA
CAAGAGTGTCACAGTGAAAGGCGCTTCTATGGTAGCGTTGACGTCAGCGA
ACGACAGCAGCAGTAAAAAGGAAGCAGCTTTCCTGGAAAGCTTGCCTTTC
CGCCTTTTCCTCACGGAGCAAGAACGGGCCATGCGAGGTCAGGTAGTCCT
ACCGTATGAGCGGCAACGAAACAGTGGGGGGCAAACCATCATGAATCAAC
CACGACAGCCGCTTATTTATCACGAGGTGGAGGGAGGGGACGAGGACGAG
GATGAGGAGGAGTACTACGACGACATCGACGATGATTTGGACTTGTAA
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Synonyms
Publications