jgi.p|Nanoce1779_2|289831, mRNA_1957 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|289831
Unique Name	mRNA_1957
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	863
Alignment location	scaffold_4:436046..437380 +

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Properties


Property Name	Value
TranscriptId	289917
Track	FilteredModels2
ProteinId	289831

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:436046..437380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|289831	gene_1957	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|289831	mRNA_1957-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1957	CDS_1957	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:436046..437380+
coding sequence from alignment at scaffold_4:436046..437380+

mRNA sequence

>mRNA_1957 ID=mRNA_1957|Name=jgi.p|Nanoce1779_2|289831|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
AACTCCGAACAGGGGCTGAGGGCGCGAACTGAGTTTCCCCTGAGCGCCAC
CCTCATCACACACAAACACACAAACACACAAACACACAAACACACAAACA
CACAAACACACAAACACACACACACACATGAACACATCCCCCACCCCAAA
TTATCACTTTCTACATCATTCGGCTTACATATGTAAAGTCTCACAGCATC
TTTCAACCACAGAGGCGCAGCAGGGCCGACGCCAGGAACATGAGCCGACG
GGCCAGCGGGGAGCAAGTGAAGCAAGACGCGGGCATGGAAGAAGTGGACG
ACCCTACCCGAGTGTTGGAGCGGGAACGAGTCGGTGACACAGGGGCCAAT
GGGGGCGGACATGTCGAACGAAGCCATGGCATCGACCCAAGGGAACTGGC
ACCCTTTCTGAATGCACTGGACCAGTACAATCCCACGATCCCAGAGGAAG
TCACAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAA
ATCAAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCGT
GCACGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAGAGACAC
TCAAAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAAA
CTCAAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAAA
AAGTCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTCA
TTCGTCGGTCGGCCTCTAGGAATCTGTAGATTAAGTTAGGAAAATATAAT
ATAATGAAAGACGAGCGACAAGAGAAGATGTACAGAAAAAAGTTTTACGG
CCGTCGGAGACAT

protein sequence of jgi.p|Nanoce1779_2|289831

>mRNA_1957-protein ID=mRNA_1957-protein|Name=jgi.p|Nanoce1779_2|289831|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSRRASGEQVKQDAGMEEVDDPTRVLERERVGDTGANGGGHVERSHGIDP
RELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLV
SEIVHDTTTYSRMKEHDGETLKMEDLMESLGKYGIQKLKVGGAECEAGEE
EGGKSPLTGREAVGGGGGGVIRRSASRNL*

mRNA from alignment at scaffold_4:436046..437380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1957 ID=mRNA_1957|Name=jgi.p|Nanoce1779_2|289831|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_4:436046..437380+ (Nannochloropsis oceanica)
AACTCCGAACAGGGGCTGAGGGCGCGAACTGAGTTTCCCCTGAGCGCCAC
CCTCATCACACACAAACACACAAACACACAAACACACAAACACACAAACA
CACAAACACACAAACACACACACACACATGAACACATCCCCCACCCCAAA
TTATCACTTTCTACATCATTCGGCTTACATATGTAAAGTCTCACAGCATC
TTTCAACCACAGAGGCGCAGCAGGGCCGACGCCAGGAACATGAGCCGACG
GGCCAGCGGGGAGCAAGTGAAGCAAGACGCGGGCATGGAAGAAGTGGACG
ACCCTACCCGAGTGTTGGAGCGGGAACGAGTCGGTGACACAGGGGCCAAT
GGGGGCGGACATGTCGAACGAAGCCATGGCATCGACCCAAGGGAACTGGC
ACCCTTTCTGAATGCACTGGACCAGTACAATCCCACGGTAGGGGAAGGAC
AGGGGTGAAGGTGATGCACATGATGCATGAGTATGTACGTGCTTCGCAAG
CATGAAGGGGCAATACCCATAACGTCATTATTTGGTACCATGATGTTATC
GTTTCTTTGGGCTCTTATCTCTACAGAGTTGTTGGTTGTCTCATTCCATG
TCCTCCCTCCCTGTCCTCTCCTACACTCCTCCACCAAAACTCTCTCACAG
ATCCCAGAGGAAGTCACAGCATACTTCCTGCAACAAGCTGGTGTCACGGT
GAATGACCCAAAAATGTACGTGGACTAGTAGGCACAATGGAGCCAACATT
TCCTACTCTCCCCTCCAGCCCTTCCGCTGTTTTTTTTTCTTTTTTTCTTT
TCATTTTTAACTTGATTTGAATAAAACACAAATTACCGAAAAGAAATCTC
GGCAACCATCTCCTCCAATCTGATTCATTGTCTCTTTCATATTTTGTCGC
ATTCATTATCCCTTCCTCCCCTCTTCCCCCGTCCAACCCGCTATTTCTCC
CATCCTTCACTCCCTTCACGACAGCAAAAAGCTTGTATCCCTGGCAGCCG
AAAAACTGGTGTCAGAAATCGTGCACGACACCACAACCTACAGTCGGATG
AAGGAACATGACGGAGAGACACTCAAAATGGAGGATTTAATGGAAAGTTT
GGGGAAATACGGCATCCAGAAACTCAAAGTAGGAGGAGCAGAATGCGAGG
CAGGGGAGGAGGAAGGGGGAAAAAGTCCCTTGACGGGAAGGGAGGCAGTT
GGAGGAGGTGGAGGGGGAGTCATTCGTCGGTCGGCCTCTAGGAATCTGTA
GATTAAGTTAGGAAAATATAATATAATGAAAGACGAGCGACAAGAGAAGA
TGTACAGAAAAAAGTTTTACGGCCGTCGGAGACAT

Coding sequence (CDS) from alignment at scaffold_4:436046..437380+

>mRNA_1957 ID=mRNA_1957|Name=jgi.p|Nanoce1779_2|289831|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_4:436046..437380+ (Nannochloropsis oceanica)
ATGAGCCGACGGGCCAGCGGGGAGCAAGTGAAGCAAGACGCGGGCATGGA
AGAAGTGGACGACCCTACCCGAGTGTTGGAGCGGGAACGAGTCGGTGACA
CAGGGGCCAATGGGGGCGGACATGTCGAACGAAGCCATGGCATCGACCCA
AGGGAACTGGCACCCTTTCTGAATGCACTGGACCAGTACAATCCCACGAT
CCCAGAGGAAGTCACAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGA
ATGACCCAAAAATCAAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTG
TCAGAAATCGTGCACGACACCACAACCTACAGTCGGATGAAGGAACATGA
CGGAGAGACACTCAAAATGGAGGATTTAATGGAAAGTTTGGGGAAATACG
GCATCCAGAAACTCAAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAG
GAAGGGGGAAAAAGTCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGG
AGGGGGAGTCATTCGTCGGTCGGCCTCTAGGAATCTGTAGATGAGCCGAC
GGGCCAGCGGGGAGCAAGTGAAGCAAGACGCGGGCATGGAAGAAGTGGAC
GACCCTACCCGAGTGTTGGAGCGGGAACGAGTCGGTGACACAGGGGCCAA
TGGGGGCGGACATGTCGAACGAAGCCATGGCATCGACCCAAGGGAACTGG
CACCCTTTCTGAATGCACTGGACCAGTACAATCCCACGATCCCAGAGGAA
GTCACAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAA
AATCAAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCG
TGCACGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAGAGACA
CTCAAAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAA
ACTCAAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAA
AAAGTCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTC
ATTCGTCGGTCGGCCTCTAGGAATCTGTAGATGAGCCGACGGGCCAGCGG
GGAGCAAGTGAAGCAAGACGCGGGCATGGAAGAAGTGGACGACCCTACCC
GAGTGTTGGAGCGGGAACGAGTCGGTGACACAGGGGCCAATGGGGGCGGA
CATGTCGAACGAAGCCATGGCATCGACCCAAGGGAACTGGCACCCTTTCT
GAATGCACTGGACCAGTACAATCCCACGATCCCAGAGGAAGTCACAGCAT
ACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATCAAAAAG
CTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCGTGCACGACAC
CACAACCTACAGTCGGATGAAGGAACATGACGGAGAGACACTCAAAATGG
AGGATTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAAACTCAAAGTA
GGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAAAAAGTCCCTT
GACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTCATTCGTCGGT
CGGCCTCTAGGAATCTGTAG

Synonyms

Publications