jgi.p|Nanoce1779_2|578528, mRNA_1956 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578528
Unique Name	mRNA_1956
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1870
Alignment location	scaffold_4:434065..435934 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578614
Track	FilteredModels2
ProteinId	578528

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:434065..435934 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578528	gene_1956	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578528	mRNA_1956-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1956	CDS_1956	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:434065..435934-
coding sequence from alignment at scaffold_4:434065..435934-

mRNA sequence

>mRNA_1956 ID=mRNA_1956|Name=jgi.p|Nanoce1779_2|578528|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp
AGGAGGAACAGAAGGGCGGATCAAAGACGTGCCTTATTCAGGAGGCGGCC
CAGGCTGTGCGAGACCAACGCAAAAACACAAGCTAGGCGAAGGTGGGCTT
GTCAAATTTGCATATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGC
CCCAGCGCCACCCTCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTG
CAAAATACACCCTCGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTT
GGATGAAGGCGACATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCT
CGTCTCCTTCGGGCGCCGGGGAGCACCACGGCAGGAGCCAGCAGGACTTG
TCCGCGGGCGGATATGGATGGTACGACAATGAAGAGAGCATGGGCAGCAT
GAGCCCCTATGGTGGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGAT
GGGGGGCTGTGAGGGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATG
ATGGAGAGAACAGCTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAA
GGAGGACCAGGAAGAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACG
CGCACTACCATCGTCACCATCATCCCCAACACGCCCACAATCTGAGCATC
GCTGACGAGAGCAACAAGAACAGCAGCAATGGGATACGCAATATGGGCAT
CAATGGTCGGCATCTAGATCACCGGCCTGCAGACAAGGAGATTTTATTCC
ACCTCCTCAAAACCGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCA
AACGACGTCGACGAATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAAT
GCACCGGTACCAGTGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCT
ACCAAAGGTGCAAGAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTG
GGGGGGCTTCGGATTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATT
TCTCGTCTGCCTCTGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGAT
TCAGTGCTTTCGTCCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCG
GGCCGGTTGCCGGCCACGCGACGGGCATGGGACACTATGGAGTCTCGGAG
GAAGTGGTGGCGGTGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGT
TTCTCGAATCTTTCCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATT
TTGTTGATGAAGTTTGCCTCGTCGGACGTGACGCCCGAGGGATTTGGGAA
TGGTCACAAGTTTTCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCA
CCGGTGGAGACTGCGGTTGGAGAAATGTGGTGGTCTGCAATATTCGTAGC
CAGGAAGAAGTGCTGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGG
TAGTGATAGTGAGGGGGAGGACGACGAGGAGGGAGCACGTGAAGAGTGAT
GCCTGTGAAAGAAGGATGCTGTGATTGGAAAGAGGTCATTCAGGGAAACG
AACGAGAGATGCGACCGATTATTAAAGCGGAGCATTTGTGCATTTACCAG
CGTGTAAGGCTGTTTGATATGAAATGAGACAAAGCTTGGCCTGACTAAAT
CAAGATTGTCAATGAGAAAGTCAGTGTGGCGATAATGCAGACCAACAACG
ACCATCAAATCACATAATTCAATTTCAAGAGGTTCTCATCATGTACCTTA
CAGCATGTCGATTAGCTTAACCAACTTTTTGTATTCATAAATATTCTCTT
CTCAGATCGGGAGTCATGTAGATGGAGGCTGTCCGGAGGCGACGACGAGC
CTTCTTTTTTCCTGTGCTTG

protein sequence of jgi.p|Nanoce1779_2|578528

>mRNA_1956-protein ID=mRNA_1956-protein|Name=jgi.p|Nanoce1779_2|578528|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MKSNASTLHLPQPQRHPHDDGRHKDLPPLQNTPSTADISAGSGLLLDEGD
IKHHMFSLDVTSSSPSGAGEHHGRSQQDLSAGGYGWYDNEESMGSMSPYG
GGEDDNDSRGSGWGAVRVLSRMETFREDMMERTAAVGEEDGKEEDKEDQE
EWRLQQPQDGSHAHYHRHHHPQHAHNLSIADESNKNSSNGIRNMGINGRH
LDHRPADKEILFHLLKTDFSVMTRQFLDANDVDEFLRRSRSNRERMHRYQ
CQHPHQHPHQSCYQRCKRKNQPVYAALGVGGLRICQTACGGQHAEFLVCL
CLNQRTFVAWKRFSAFVQLYHDGHVAHGAGRLPATRRAWDTMESRRKWWR
CLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASSDVTPEGFGNGHKF
SCFSGMAPGTHGTGGDCGWRNVVVCNIRSQEEVLREKVLQGGAVSGSDSE
GEDDEEGAREE*

mRNA from alignment at scaffold_4:434065..435934-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1956 ID=mRNA_1956|Name=jgi.p|Nanoce1779_2|578528|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp|location=Sequence derived from alignment at scaffold_4:434065..435934- (Nannochloropsis oceanica)
AGGAGGAACAGAAGGGCGGATCAAAGACGTGCCTTATTCAGGAGGCGGCC
CAGGCTGTGCGAGACCAACGCAAAAACACAAGCTAGGCGAAGGTGGGCTT
GTCAAATTTGCATATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGC
CCCAGCGCCACCCTCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTG
CAAAATACACCCTCGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTT
GGATGAAGGCGACATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCT
CGTCTCCTTCGGGCGCCGGGGAGCACCACGGCAGGAGCCAGCAGGACTTG
TCCGCGGGCGGATATGGATGGTACGACAATGAAGAGAGCATGGGCAGCAT
GAGCCCCTATGGTGGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGAT
GGGGGGCTGTGAGGGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATG
ATGGAGAGAACAGCTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAA
GGAGGACCAGGAAGAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACG
CGCACTACCATCGTCACCATCATCCCCAACACGCCCACAATCTGAGCATC
GCTGACGAGAGCAACAAGAACAGCAGCAATGGGATACGCAATATGGGCAT
CAATGGTCGGCATCTAGATCACCGGCCTGCAGACAAGGAGATTTTATTCC
ACCTCCTCAAAACCGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCA
AACGACGTCGACGAATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAAT
GCACCGGTACCAGTGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCT
ACCAAAGGTGCAAGAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTG
GGGGGGCTTCGGATTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATT
TCTCGTCTGCCTCTGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGAT
TCAGTGCTTTCGTCCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCG
GGCCGGTTGCCGGCCACGCGACGGGCATGGGACACTATGGAGTCTCGGAG
GAAGTGGTGGCGGTGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGT
TTCTCGAATCTTTCCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATT
TTGTTGATGAAGTTTGCCTCGTCGGACGTGACGCCCGAGGGATTTGGGAA
TGGTCACAAGTTTTCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCA
CCGGTGGAGACTGCGGTTGGAGAAATGTGGTGGTCTGCAATATTCGTAGC
CAGGAAGAAGTGCTGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGG
TAGTGATAGTGAGGGGGAGGACGACGAGGAGGGAGCACGTGAAGAGTGAT
GCCTGTGAAAGAAGGATGCTGTGATTGGAAAGAGGTCATTCAGGGAAACG
AACGAGAGATGCGACCGATTATTAAAGCGGAGCATTTGTGCATTTACCAG
CGTGTAAGGCTGTTTGATATGAAATGAGACAAAGCTTGGCCTGACTAAAT
CAAGATTGTCAATGAGAAAGTCAGTGTGGCGATAATGCAGACCAACAACG
ACCATCAAATCACATAATTCAATTTCAAGAGGTTCTCATCATGTACCTTA
CAGCATGTCGATTAGCTTAACCAACTTTTTGTATTCATAAATATTCTCTT
CTCAGATCGGGAGTCATGTAGATGGAGGCTGTCCGGAGGCGACGACGAGC
CTTCTTTTTTCCTGTGCTTG

Coding sequence (CDS) from alignment at scaffold_4:434065..435934-

>mRNA_1956 ID=mRNA_1956|Name=jgi.p|Nanoce1779_2|578528|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_4:434065..435934- (Nannochloropsis oceanica)
ATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGCCCCAGCGCCACCC
TCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTGCAAAATACACCCT
CGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTTGGATGAAGGCGAC
ATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCTCGTCTCCTTCGGG
CGCCGGGGAGCACCACGGCAGGAGCCAGCAGGACTTGTCCGCGGGCGGAT
ATGGATGGTACGACAATGAAGAGAGCATGGGCAGCATGAGCCCCTATGGT
GGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGATGGGGGGCTGTGAG
GGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATGATGGAGAGAACAG
CTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAAGGAGGACCAGGAA
GAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACGCGCACTACCATCG
TCACCATCATCCCCAACACGCCCACAATCTGAGCATCGCTGACGAGAGCA
ACAAGAACAGCAGCAATGGGATACGCAATATGGGCATCAATGGTCGGCAT
CTAGATCACCGGCCTGCAGACAAGGAGATTTTATTCCACCTCCTCAAAAC
CGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCAAACGACGTCGACG
AATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAATGCACCGGTACCAG
TGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCTACCAAAGGTGCAA
GAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTGGGGGGGCTTCGGA
TTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATTTCTCGTCTGCCTC
TGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGATTCAGTGCTTTCGT
CCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCGGGCCGGTTGCCGG
CCACGCGACGGGCATGGGACACTATGGAGTCTCGGAGGAAGTGGTGGCGG
TGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGTTTCTCGAATCTTT
CCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATTTTGTTGATGAAGT
TTGCCTCGTCGGACGTGACGCCCGAGGGATTTGGGAATGGTCACAAGTTT
TCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCACCGGTGGAGACTG
CGGTTGGAGAAATGTGGTGGTCTGCAATATTCGTAGCCAGGAAGAAGTGC
TGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGGTAGTGATAGTGAG
GGGGAGGACGACGAGGAGGGAGCACGTGAAGAGTGA

Synonyms

Publications