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Properties
| Property Name | Value |
|---|
| TranscriptId | 289961 |
| Track | FilteredModels2 |
| ProteinId | 289875 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:431261..433718 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1955 ID=mRNA_1955|Name=jgi.p|Nanoce1779_2|289875|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
TGAGAAGATAATTGACGCACCCACCCACCGCATTCACAAGATTAGGAAAG
TAAGCGGCTGTGCGGCCGCTATTGCTCTCGATCACTCTACCACAACACAC
ACATTGTGGGAAAGTATCCATTAGTTTCGGGGATAGCAGTGTGGACGCGG
AAACAGGTCGAGGGGTAACCCGCGCACCCGCGTTTCCACTCCCCTCGCGA
GCACGACAGGGTCGAAGTCCTCCGTGCTTTCTCTTCTCCCTTTCTCAATG
TCCTCGTCCGCCGCGCCCGACCCCACGTCTTGCAGTCACAGCCATTATGG
CCATTACCACCAGCCACATCATTCCAGGGAGTCCTCTTCGGGGGGGAGGT
CTTCACCTGGGGATGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCAGGA
AAGGGGCCGCAAAACTCCCAGGCCATTACTAGCACTTATACTAGCGCTCA
GGACGGAAGATCGATAGCTTCCACTTCCTCCAAGGCATGCGGCATCGCTA
AAGGTAGCACTAGCAATACCCCGAGCTTTGACCTGGATCTAGCACGGCGC
GGCGTCGTAGTGGATAAGGCCCATTTAATGCGCCTCGCCTCCCAATACAC
AGCTTGCACCGGGTGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTCCTT
TGCATGAACTCCGCCTCCTGAATGCCGTGATGGCCGATGACCCTTCTCAA
AACGCTCTTTTGCTTCGAGAGCCATTCCTACAAAACCCCTCACGGACCAT
CCAGCTTGTCAATCGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCCAAT
CCCATGGAGCCAGTGGCCGATGTCCCGTGCATCGTCGAGCAGGGTCGTCG
GCGGTGATTCATCATAGAAGCAGCATCAGCAGCATCAGCAGCAGCAGCAG
CAGCAGCAGCAGTAACAGTAACAATGGTTGGGGGGGGGGGATGGATGGAG
TCTGGAAGTGGGAGGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAA
AAGGTGGCCACGATAGAAATAGTGGTATTGGAAGCCGCGATGCACCAGGC
GACGTCCACGCATCGGTTCTGTGTCGACTGTAAACATAATGTCGTCACGG
CTTTGGATGTCTTGACCGAACGGATCAGGGAAGAGGAGCTCGAGAATGGA
GATGAGTTAAATCGGGAGGTATTTAGTCCATTTGTCGGAAGGATATTTGC
ACCAGCAGCAGAGAGAGGAGAAACGGAGGAAAGGGGGGAGGAGGGGAGGG
AGGAGGCGGTGTCAGCGGCGGGGGAGAAGAGTAGAGCGCCGCTGGTGTCG
TCATTGTCGGGGAATAATGAGGGGAAATTGTTGTGTTGTGCGGTGGGGGA
TGTTGAGGATTTAATCACGTGGGCAGAGGATTTTGACGCCCAAGAGTACA
CCTCTTCAGGGCAGCGGCACGCCGCAACTCTCGAGCACGGGCAGAGAGAA
GTACGCGCTATCGTTGGTCAGTTGTTGTTGAGTCAGGTGCGGGCGGCGTG
GCATCATCACGCTGCACAGACTCAGGCGGAGCAGTATCTGTTTTCACTGG
TCATGCATGCGTTGAGGATGCAGTTGTGCAGCAGCAGTATCAATGGTAGC
AATGGCAACAGTAGTAGCAGTAATAGTGATTGTGTTGTAAAACGAATAGA
ATCCAACCGAAGAAGAGGTGGAGAAGGAAAAAGAGGAGAAGGAGGAGGCT
GAGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCACGAAA
GATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAGGACC
AGCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCAAT back to topprotein sequence of jgi.p|Nanoce1779_2|289875 >mRNA_1955-protein ID=mRNA_1955-protein|Name=jgi.p|Nanoce1779_2|289875|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MSSSAAPDPTSCSHSHYGHYHQPHHSRESSSGGRSSPGDGRASKLRESAP
GKGPQNSQAITSTYTSAQDGRSIASTSSKACGIAKGSTSNTPSFDLDLAR
RGVVVDKAHLMRLASQYTACTGCSAAVKALLARPLHELRLLNAVMADDPS
QNALLLREPFLQNPSRTIQLVNRFPLPPVPKKVQSHGASGRCPVHRRAGS
SAVIHHRSSISSISSSSSSSSSNSNNGWGGGMDGVWKWEEAWERLPAEAK
EKVATIEIVVLEAAMHQATSTHRFCVDCKHNVVTALDVLTERIREEELEN
GDELNREVFSPFVGRIFAPAAERGETEERGEEGREEAVSAAGEKSRAPLV
SSLSGNNEGKLLCCAVGDVEDLITWAEDFDAQEYTSSGQRHAATLEHGQR
EVRAIVGQLLLSQVRAAWHHHAAQTQAEQYLFSLVMHALRMQLCSSSING
SNGNSSSSNSDCVVKRIESNRRRGGEGKRGEGGG* back to topmRNA from alignment at scaffold_4:431261..433718- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1955 ID=mRNA_1955|Name=jgi.p|Nanoce1779_2|289875|organism=Nannochloropsis oceanica|type=mRNA|length=2458bp|location=Sequence derived from alignment at scaffold_4:431261..433718- (Nannochloropsis oceanica)
TGAGAAGATAATTGACGCACCCACCCACCGCATTCACAAGATTAGGAAAG
TAAGCGGCTGTGCGGCCGCTATTGCTCTCGATCACTCTACCACAACACAC
ACATTGTGGGAAAGTATCCATTAGTTTCGGGGATAGCAGTGTGGACGCGG
AAACAGGTCGAGGGGTAACCCGCGCACCCGCGTTTCCACTCCCCTCGCGA
GCACGACAGGGTCGAAGTCCTCCGTGCTTTCTCTTCTCCCTTTCTCAATG
TCCTCGTCCGCCGCGCCCGACCCCACGTCTTGCAGTCACAGCCATTATGG
CCATTACCACCAGCCACATCATTCCAGGGAGTCCTCTTCGGGGGGGAGGT
CTTCACCTGGGGATGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCAGGA
AAGGGGCCGCAAAACTCCCAGGCCATTACTAGCACTTATACTAGCGCTCA
GGACGGAAGATCGATAGCTTCCACTTCCTCCAAGGCATGCGGCATCGCTA
AAGGTAGCACTAGCAATACCCCGAGCTTTGACCTGGATCTAGCACGGCGC
GGCGTCGTAGTGGATAAGGCCCATTTAATGCGCCTCGCCTCCCAATACAC
AGCTTGCACCGGGTGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTCCTT
TGCATGAACTCCGCCTCCTGAATGCCGTGATGGCCGATGACCCTTCTCAA
AACGCTCTTTTGCTTCGAGAGCCATTCCTACAAAACCCCTCACGGACCAT
CCAGCTTGTCAATCGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCCAAT
CCCATGGAGCCAGTGGCCGATGTCCCGTGCATCGTCGAGCAGGGTCGTCG
GCGGTGATTCATCATAGAAGCAGCATCAGCAGCATCAGCAGCAGCAGCAG
CAGCAGCAGCAGTAACAGTAACAATGGTTGGGGGGGGGGGATGGATGGAG
TCTGGAAGTGGGAGGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAA
AAGGTGGCCACGATAGAAATAGTGGTATTGGAAGCCGCGATGCACCAGGC
GACGTCCACGCATCGGTTCTGTGTCGACTGTAAACATAATGTCGTCACGG
CTTTGGATGTCTTGACCGAACGGATCAGGGAAGAGGAGCTCGAGAATGGA
GATGAGTTAAATCGGGAGGTATTTAGTCCATTTGTCGGAAGGATATTTGC
ACCAGCAGCAGAGAGAGGAGAAACGGAGGAAAGGGGGGAGGAGGGGAGGG
AGGAGGCGGTGTCAGCGGCGGGGGAGAAGAGTAGAGCGCCGCTGGTGTCG
TCATTGTCGGGGAATAATGAGGGGAAATTGTTGTGTTGTGCGGTGGGGGA
TGTTGAGGATTTAATCACGTGGGCAGAGGTAAGGAGAGAGGGAAGGAGGG
TGTGAGAAAAGGGGAATGGAGTGGCTGAGATATGTGTCACGCACTGGGAA
ACCTTCGGTTATATTTTCATCTCTCAACATGCATTCCCTGCTACCTCGTG
TACTCTCCCTCCATATCCTCCTGCCTTTCTCGACCCATTATCCTCCCTGA
CTTGGACACTAGCTGGGATGACAAGAGTATGAGCAGGTCATGTGCTAAAT
CTTCATCCTTCCCGCTCTGCCTGCTTTTATTTTTCAAATTCACAACACAG
GATTTTGACGCCCAAGAGTACACCTCTTCAGGGCAGCGGCACGCCGCAAC
TCTCGAGCACGGGCAGAGAGAAGTACGCGCTATCGTTGGTCAGTTGTTGT
TGAGTCAGGTGCGGGCGGCGTGGCATCATCACGCTGCACAGACTCAGGCG
GAGCAGTATCTGTTTTCACTGGTCATGCATGCGTTGAGGATGCAGTTGTG
CAGCAGCAGTATCAATGGTAGCAATGGCAACAGTAGTAGCAGTAATAGTG
ATTGTGTTGTAAAACGAATAGAATCCAACCGAAGAAGAGGTGGAGAAGGA
AAAAGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAACAGGAGGAGTAGG
GGGAGAGGTTGTCGTAGTGTCTGCTATATCTGCGGCGGAGCTGGCAGCGA
CGCGGTTGCTAGAGGAGGAGGATGAGAAGGAGTGTGAGGCGGCGGCGAAG
AAGAGAAGTAAGGGCCGGAAGAGTAAAATGCGTCGAGCGAAAGCGAAGGC
CAGGAAAGCTTTGGGTGGTGGCAGGTGTAGTAGCTGCACTGCGAGTCACA
CACGAAGGGAGGACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAG
GAAGAAAGAGAGGAGGAAAGAGGGAAGGAATGCGAATGCAGGGAGGAGCA
GAAGGAGGCTGAGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCC
GGGCACGAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGAC
CAGCAGGACCAGCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTC
CCCGCAAT back to topCoding sequence (CDS) from alignment at scaffold_4:431261..433718- >mRNA_1955 ID=mRNA_1955|Name=jgi.p|Nanoce1779_2|289875|organism=Nannochloropsis oceanica|type=CDS|length=4365bp|location=Sequence derived from alignment at scaffold_4:431261..433718- (Nannochloropsis oceanica)
GAGGCTGAGATTTTGACGCCCAAGAGTACACCTCTTCAGGGCAGCGGCAC
GCCGCAACTCTCGAGCACGGGCAGAGAGAAGTACGCGCTATCGTTGGTCA
GTTGTTGTTGAGTCAGGTGCGGGCGGCGTGGCATCATCACGCTGCACAGA
CTCAGGCGGAGCAGTATCTGTTTTCACTGGTCATGCATGCGTTGAGGATG
CAGTTGTGCAGCAGCAGTATCAATGGTAGCAATGGCAACAGTAGTAGCAG
TAATAGTGATTGTGTTGTAAAACGAATAGAATCCAACCGAAGAAGAGGTG
GAGAAGGAAAAAGAGGAGAAGGAGATGTCCTCGTCCGCCGCGCCCGACCC
CACGTCTTGCAGTCACAGCCATTATGGCCATTACCACCAGCCACATCATT
CCAGGGAGTCCTCTTCGGGGGGGAGGTCTTCACCTGGGGATGGAAGGGCA
AGCAAGCTGAGGGAAAGTGCTCCAGGAAAGGGGCCGCAAAACTCCCAGGC
CATTACTAGCACTTATACTAGCGCTCAGGACGGAAGATCGATAGCTTCCA
CTTCCTCCAAGGCATGCGGCATCGCTAAAGGTAGCACTAGCAATACCCCG
AGCTTTGACCTGGATCTAGCACGGCGCGGCGTCGTAGTGGATAAGGCCCA
TTTAATGCGCCTCGCCTCCCAATACACAGCTTGCACCGGGTGCTCCGCCG
CAGTCAAAGCCCTCCTCGCCCGTCCTTTGCATGAACTCCGCCTCCTGAAT
GCCGTGATGGCCGATGACCCTTCTCAAAACGCTCTTTTGCTTCGAGAGCC
ATTCCTACAAAACCCCTCACGGACCATCCAGCTTGTCAATCGCTTCCCCC
TCCCCCCTGTGCCTAAGAAAGTCCAATCCCATGGAGCCAGTGGCCGATGT
CCCGTGCATCGTCGAGCAGGGTCGTCGGCGGTGATTCATCATAGAAGCAG
CATCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAACAGTAACA
ATGGTTGGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGAGGAAGCCTGG
GAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGATAGAAATAGT
GGTATTGGAAGCCGCGATGCACCAGGCGACGTCCACGCATCGGTTCTGTG
TCGACTGTAAACATAATGTCGTCACGGCTTTGGATGTCTTGACCGAACGG
ATCAGGGAAGAGGAGCTCGAGAATGGAGATGAGTTAAATCGGGAGGTATT
TAGTCCATTTGTCGGAAGGATATTTGCACCAGCAGCAGAGAGAGGAGAAA
CGGAGGAAAGGGGGGAGGAGGGGAGGGAGGAGGCGGTGTCAGCGGCGGGG
GAGAAGAGTAGAGCGCCGCTGGTGTCGTCATTGTCGGGGAATAATGAGGG
GAAATTGTTGTGTTGTGCGGTGGGGGATGTTGAGGATTTAATCACGTGGG
CAGAGGAGGCTGAGATTTTGACGCCCAAGAGTACACCTCTTCAGGGCAGC
GGCACGCCGCAACTCTCGAGCACGGGCAGAGAGAAGTACGCGCTATCGTT
GGTCAGTTGTTGTTGAGTCAGGTGCGGGCGGCGTGGCATCATCACGCTGC
ACAGACTCAGGCGGAGCAGTATCTGTTTTCACTGGTCATGCATGCGTTGA
GGATGCAGTTGTGCAGCAGCAGTATCAATGGTAGCAATGGCAACAGTAGT
AGCAGTAATAGTGATTGTGTTGTAAAACGAATAGAATCCAACCGAAGAAG
AGGTGGAGAAGGAAAAAGAGGAGAAGGAGATGTCCTCGTCCGCCGCGCCC
GACCCCACGTCTTGCAGTCACAGCCATTATGGCCATTACCACCAGCCACA
TCATTCCAGGGAGTCCTCTTCGGGGGGGAGGTCTTCACCTGGGGATGGAA
GGGCAAGCAAGCTGAGGGAAAGTGCTCCAGGAAAGGGGCCGCAAAACTCC
CAGGCCATTACTAGCACTTATACTAGCGCTCAGGACGGAAGATCGATAGC
TTCCACTTCCTCCAAGGCATGCGGCATCGCTAAAGGTAGCACTAGCAATA
CCCCGAGCTTTGACCTGGATCTAGCACGGCGCGGCGTCGTAGTGGATAAG
GCCCATTTAATGCGCCTCGCCTCCCAATACACAGCTTGCACCGGGTGCTC
CGCCGCAGTCAAAGCCCTCCTCGCCCGTCCTTTGCATGAACTCCGCCTCC
TGAATGCCGTGATGGCCGATGACCCTTCTCAAAACGCTCTTTTGCTTCGA
GAGCCATTCCTACAAAACCCCTCACGGACCATCCAGCTTGTCAATCGCTT
CCCCCTCCCCCCTGTGCCTAAGAAAGTCCAATCCCATGGAGCCAGTGGCC
GATGTCCCGTGCATCGTCGAGCAGGGTCGTCGGCGGTGATTCATCATAGA
AGCAGCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAACAG
TAACAATGGTTGGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGAGGAAG
CCTGGGAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGATAGAA
ATAGTGGTATTGGAAGCCGCGATGCACCAGGCGACGTCCACGCATCGGTT
CTGTGTCGACTGTAAACATAATGTCGTCACGGCTTTGGATGTCTTGACCG
AACGGATCAGGGAAGAGGAGCTCGAGAATGGAGATGAGTTAAATCGGGAG
GTATTTAGTCCATTTGTCGGAAGGATATTTGCACCAGCAGCAGAGAGAGG
AGAAACGGAGGAAAGGGGGGAGGAGGGGAGGGAGGAGGCGGTGTCAGCGG
CGGGGGAGAAGAGTAGAGCGCCGCTGGTGTCGTCATTGTCGGGGAATAAT
GAGGGGAAATTGTTGTGTTGTGCGGTGGGGGATGTTGAGGATTTAATCAC
GTGGGCAGAGGAGGCTGAGATTTTGACGCCCAAGAGTACACCTCTTCAGG
GCAGCGGCACGCCGCAACTCTCGAGCACGGGCAGAGAGAAGTACGCGCTA
TCGTTGGTCAGTTGTTGTTGAGTCAGGTGCGGGCGGCGTGGCATCATCAC
GCTGCACAGACTCAGGCGGAGCAGTATCTGTTTTCACTGGTCATGCATGC
GTTGAGGATGCAGTTGTGCAGCAGCAGTATCAATGGTAGCAATGGCAACA
GTAGTAGCAGTAATAGTGATTGTGTTGTAAAACGAATAGAATCCAACCGA
AGAAGAGGTGGAGAAGGAAAAAGAGGAGAAGGAGATGTCCTCGTCCGCCG
CGCCCGACCCCACGTCTTGCAGTCACAGCCATTATGGCCATTACCACCAG
CCACATCATTCCAGGGAGTCCTCTTCGGGGGGGAGGTCTTCACCTGGGGA
TGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCAGGAAAGGGGCCGCAAA
ACTCCCAGGCCATTACTAGCACTTATACTAGCGCTCAGGACGGAAGATCG
ATAGCTTCCACTTCCTCCAAGGCATGCGGCATCGCTAAAGGTAGCACTAG
CAATACCCCGAGCTTTGACCTGGATCTAGCACGGCGCGGCGTCGTAGTGG
ATAAGGCCCATTTAATGCGCCTCGCCTCCCAATACACAGCTTGCACCGGG
TGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTCCTTTGCATGAACTCCG
CCTCCTGAATGCCGTGATGGCCGATGACCCTTCTCAAAACGCTCTTTTGC
TTCGAGAGCCATTCCTACAAAACCCCTCACGGACCATCCAGCTTGTCAAT
CGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCCAATCCCATGGAGCCAG
TGGCCGATGTCCCGTGCATCGTCGAGCAGGGTCGTCGGCGGTGATTCATC
ATAGAAGCAGCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGT
AACAGTAACAATGGTTGGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGA
GGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGA
TAGAAATAGTGGTATTGGAAGCCGCGATGCACCAGGCGACGTCCACGCAT
CGGTTCTGTGTCGACTGTAAACATAATGTCGTCACGGCTTTGGATGTCTT
GACCGAACGGATCAGGGAAGAGGAGCTCGAGAATGGAGATGAGTTAAATC
GGGAGGTATTTAGTCCATTTGTCGGAAGGATATTTGCACCAGCAGCAGAG
AGAGGAGAAACGGAGGAAAGGGGGGAGGAGGGGAGGGAGGAGGCGGTGTC
AGCGGCGGGGGAGAAGAGTAGAGCGCCGCTGGTGTCGTCATTGTCGGGGA
ATAATGAGGGGAAATTGTTGTGTTGTGCGGTGGGGGATGTTGAGGATTTA
ATCACGTGGGCAGAG back to top
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