jgi.p|Nanoce1779_2|578522, mRNA_1954 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578522
Unique Name	mRNA_1954
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	969
Alignment location	scaffold_4:430544..431512 -

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Properties


Property Name	Value
TranscriptId	578608
Track	FilteredModels2
ProteinId	578522

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:430544..431512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578522	gene_1954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578522	mRNA_1954-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1954	CDS_1954	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:430544..431512-
coding sequence from alignment at scaffold_4:430544..431512-

mRNA sequence

>mRNA_1954 ID=mRNA_1954|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
GGGAGGACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAGGAAGAA
AGAGAGGAGGAAAGAGGGAAGGAATGCGAATGCAGGGAGGAGCAGAAGGA
GGCTGAGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCAC
GAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAG
GACCAGCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCA
ATCCAAGTCGAAGAGTGCTCATTCCCACCACCCCTCGGAGAAACAGTCAC
GGCAACAGCAACAGCAACAGCACCCGATCGAGCACGAGTACGAGTACACG
AACGTGGTCTTGTCCCAATCCTGCTACGACGTCGCAGCAGAAGAGAGGCT
ATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGGAGGGGGAGGGGGGGAGG
CAGTATACCCGCAGTCGTTGTTGGACCAGTTGGGCCCAGAGGAGGAGGAG
GAGGAGGACCCGGATGACCCTTTGCAGCAGGAGATGGAAAGGTTGAAGAC
GAATTTGAGTGCGGAGAGCGATCGGCGCGAGCAGCTGCGCTCGAGGCTTG
CACGTAATTTTGAACAGTGGTGCTTGACGGTAGAGGAGATGTAGGAGGGA
GGGAAGGCGTGGAGAAGGATGTGGAGTCCTTCTCATCTATGTATGAGAGG
ATGATGTCGATGATGTCGACAAGAGTGAAGCTTCCACTCAACGATTGTCG
ATTGTGTGGATGGGCGATGGAGAGAAGCGGCTGGTTAGCGATTAATTTTG
TTGAAGAGAGGGAAGAACGAAAGAAAAATTAGATATCAGCAACAATACGT
AAAAGATGTTTAAAATTGGAATAGGGATATTGCAAAAGAGAAGGGAGCAG
TGGAAAGACAGACAGAAATAGAATTCAAGTGATTTATTGGCGATAAGAAA
TATAAGCTAAGAGATCGGC

protein sequence of jgi.p|Nanoce1779_2|578522

>mRNA_1954-protein ID=mRNA_1954-protein|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MRRARKMVQQQHQQQQEQDQQDQHRQHHHQDLQWQSPQSKSKSAHSHHPS
EKQSRQQQQQQHPIEHEYEYTNVVLSQSCYDVAAEERLLRAIRGVAGRGG
GGGEAVYPQSLLDQLGPEEEEEEDPDDPLQQEMERLKTNLSAESDRREQL
RSRLARNFEQWCLTVEEM*

mRNA from alignment at scaffold_4:430544..431512-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1954 ID=mRNA_1954|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at scaffold_4:430544..431512- (Nannochloropsis oceanica)
GGGAGGACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAGGAAGAA
AGAGAGGAGGAAAGAGGGAAGGAATGCGAATGCAGGGAGGAGCAGAAGGA
GGCTGAGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCAC
GAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAG
GACCAGCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCA
ATCCAAGTCGAAGAGTGCTCATTCCCACCACCCCTCGGAGAAACAGTCAC
GGCAACAGCAACAGCAACAGCACCCGATCGAGCACGAGTACGAGTACACG
AACGTGGTCTTGTCCCAATCCTGCTACGACGTCGCAGCAGAAGAGAGGCT
ATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGGAGGGGGAGGGGGGGAGG
CAGTATACCCGCAGTCGTTGTTGGACCAGTTGGGCCCAGAGGAGGAGGAG
GAGGAGGACCCGGATGACCCTTTGCAGCAGGAGATGGAAAGGTTGAAGAC
GAATTTGAGTGCGGAGAGCGATCGGCGCGAGCAGCTGCGCTCGAGGCTTG
CACGTAATTTTGAACAGTGGTGCTTGACGGTAGAGGAGATGTAGGAGGGA
GGGAAGGCGTGGAGAAGGATGTGGAGTCCTTCTCATCTATGTATGAGAGG
ATGATGTCGATGATGTCGACAAGAGTGAAGCTTCCACTCAACGATTGTCG
ATTGTGTGGATGGGCGATGGAGAGAAGCGGCTGGTTAGCGATTAATTTTG
TTGAAGAGAGGGAAGAACGAAAGAAAAATTAGATATCAGCAACAATACGT
AAAAGATGTTTAAAATTGGAATAGGGATATTGCAAAAGAGAAGGGAGCAG
TGGAAAGACAGACAGAAATAGAATTCAAGTGATTTATTGGCGATAAGAAA
TATAAGCTAAGAGATCGGC

Coding sequence (CDS) from alignment at scaffold_4:430544..431512-

>mRNA_1954 ID=mRNA_1954|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_4:430544..431512- (Nannochloropsis oceanica)
ATGCGCCGGGCACGAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGA
ACAGGACCAGCAGGACCAGCACCGTCAGCACCACCACCAAGATCTCCAAT
GGCAGTCCCCGCAATCCAAGTCGAAGAGTGCTCATTCCCACCACCCCTCG
GAGAAACAGTCACGGCAACAGCAACAGCAACAGCACCCGATCGAGCACGA
GTACGAGTACACGAACGTGGTCTTGTCCCAATCCTGCTACGACGTCGCAG
CAGAAGAGAGGCTATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGGAGGG
GGAGGGGGGGAGGCAGTATACCCGCAGTCGTTGTTGGACCAGTTGGGCCC
AGAGGAGGAGGAGGAGGAGGACCCGGATGACCCTTTGCAGCAGGAGATGG
AAAGGTTGAAGACGAATTTGAGTGCGGAGAGCGATCGGCGCGAGCAGCTG
CGCTCGAGGCTTGCACGTAATTTTGAACAGTGGTGCTTGACGGTAGAGGA
GATGTAG

Synonyms

Publications