jgi.p|Nanoce1779_2|578522, mRNA_1954 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578522
Unique NamemRNA_1954
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length969
Alignment locationscaffold_4:430544..431512 -

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Properties
Property NameValue
TranscriptId578608
TrackFilteredModels2
ProteinId578522
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:430544..431512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578522gene_1954Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578522mRNA_1954-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1954CDS_1954Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1954 ID=mRNA_1954|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
GGGAGGACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAGGAAGAA
AGAGAGGAGGAAAGAGGGAAGGAATGCGAATGCAGGGAGGAGCAGAAGGA
GGCTGAGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCAC
GAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAG
GACCAGCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCA
ATCCAAGTCGAAGAGTGCTCATTCCCACCACCCCTCGGAGAAACAGTCAC
GGCAACAGCAACAGCAACAGCACCCGATCGAGCACGAGTACGAGTACACG
AACGTGGTCTTGTCCCAATCCTGCTACGACGTCGCAGCAGAAGAGAGGCT
ATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGGAGGGGGAGGGGGGGAGG
CAGTATACCCGCAGTCGTTGTTGGACCAGTTGGGCCCAGAGGAGGAGGAG
GAGGAGGACCCGGATGACCCTTTGCAGCAGGAGATGGAAAGGTTGAAGAC
GAATTTGAGTGCGGAGAGCGATCGGCGCGAGCAGCTGCGCTCGAGGCTTG
CACGTAATTTTGAACAGTGGTGCTTGACGGTAGAGGAGATGTAGGAGGGA
GGGAAGGCGTGGAGAAGGATGTGGAGTCCTTCTCATCTATGTATGAGAGG
ATGATGTCGATGATGTCGACAAGAGTGAAGCTTCCACTCAACGATTGTCG
ATTGTGTGGATGGGCGATGGAGAGAAGCGGCTGGTTAGCGATTAATTTTG
TTGAAGAGAGGGAAGAACGAAAGAAAAATTAGATATCAGCAACAATACGT
AAAAGATGTTTAAAATTGGAATAGGGATATTGCAAAAGAGAAGGGAGCAG
TGGAAAGACAGACAGAAATAGAATTCAAGTGATTTATTGGCGATAAGAAA
TATAAGCTAAGAGATCGGC
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protein sequence of jgi.p|Nanoce1779_2|578522

>mRNA_1954-protein ID=mRNA_1954-protein|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MRRARKMVQQQHQQQQEQDQQDQHRQHHHQDLQWQSPQSKSKSAHSHHPS
EKQSRQQQQQQHPIEHEYEYTNVVLSQSCYDVAAEERLLRAIRGVAGRGG
GGGEAVYPQSLLDQLGPEEEEEEDPDDPLQQEMERLKTNLSAESDRREQL
RSRLARNFEQWCLTVEEM*
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mRNA from alignment at scaffold_4:430544..431512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1954 ID=mRNA_1954|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at scaffold_4:430544..431512- (Nannochloropsis oceanica)
GGGAGGACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAGGAAGAA
AGAGAGGAGGAAAGAGGGAAGGAATGCGAATGCAGGGAGGAGCAGAAGGA
GGCTGAGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCAC
GAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAG
GACCAGCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCA
ATCCAAGTCGAAGAGTGCTCATTCCCACCACCCCTCGGAGAAACAGTCAC
GGCAACAGCAACAGCAACAGCACCCGATCGAGCACGAGTACGAGTACACG
AACGTGGTCTTGTCCCAATCCTGCTACGACGTCGCAGCAGAAGAGAGGCT
ATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGGAGGGGGAGGGGGGGAGG
CAGTATACCCGCAGTCGTTGTTGGACCAGTTGGGCCCAGAGGAGGAGGAG
GAGGAGGACCCGGATGACCCTTTGCAGCAGGAGATGGAAAGGTTGAAGAC
GAATTTGAGTGCGGAGAGCGATCGGCGCGAGCAGCTGCGCTCGAGGCTTG
CACGTAATTTTGAACAGTGGTGCTTGACGGTAGAGGAGATGTAGGAGGGA
GGGAAGGCGTGGAGAAGGATGTGGAGTCCTTCTCATCTATGTATGAGAGG
ATGATGTCGATGATGTCGACAAGAGTGAAGCTTCCACTCAACGATTGTCG
ATTGTGTGGATGGGCGATGGAGAGAAGCGGCTGGTTAGCGATTAATTTTG
TTGAAGAGAGGGAAGAACGAAAGAAAAATTAGATATCAGCAACAATACGT
AAAAGATGTTTAAAATTGGAATAGGGATATTGCAAAAGAGAAGGGAGCAG
TGGAAAGACAGACAGAAATAGAATTCAAGTGATTTATTGGCGATAAGAAA
TATAAGCTAAGAGATCGGC
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Coding sequence (CDS) from alignment at scaffold_4:430544..431512-

>mRNA_1954 ID=mRNA_1954|Name=jgi.p|Nanoce1779_2|578522|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_4:430544..431512- (Nannochloropsis oceanica)
ATGCGCCGGGCACGAAAGATGGTTCAACAGCAGCACCAGCAGCAGCAAGA
ACAGGACCAGCAGGACCAGCACCGTCAGCACCACCACCAAGATCTCCAAT
GGCAGTCCCCGCAATCCAAGTCGAAGAGTGCTCATTCCCACCACCCCTCG
GAGAAACAGTCACGGCAACAGCAACAGCAACAGCACCCGATCGAGCACGA
GTACGAGTACACGAACGTGGTCTTGTCCCAATCCTGCTACGACGTCGCAG
CAGAAGAGAGGCTATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGGAGGG
GGAGGGGGGGAGGCAGTATACCCGCAGTCGTTGTTGGACCAGTTGGGCCC
AGAGGAGGAGGAGGAGGAGGACCCGGATGACCCTTTGCAGCAGGAGATGG
AAAGGTTGAAGACGAATTTGAGTGCGGAGAGCGATCGGCGCGAGCAGCTG
CGCTCGAGGCTTGCACGTAATTTTGAACAGTGGTGCTTGACGGTAGAGGA
GATGTAG
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Synonyms
Publications