jgi.p|Nanoce1779_2|628130, mRNA_1953 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628130
Unique NamemRNA_1953
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1526
Alignment locationscaffold_4:428978..430503 +

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Properties
Property NameValue
TranscriptId628216
TrackFilteredModels2
ProteinId628130
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:428978..430503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628130gene_1953Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628130mRNA_1953-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1953CDS_1953Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1953 ID=mRNA_1953|Name=jgi.p|Nanoce1779_2|628130|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp
CAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCAGAACCGGCGGCA
GAAATTGCACGAACATATGGGTTTAAATGCCATGGACAAGGTAAGTATCA
ACATGACCCTCGCAGCAAATCTCCGTGCCGCCGCCATCGAAGCCGGGCGA
GAAGGAGGGACGGCTGGAGGAGGGTATGGAGGAAGGGAGGGAGCGAAGGA
GTGCCCTGTGGAGCTGATAGCTCCGTGCGCCGTGCCATCAGCGTCGCTTA
AGGATTATGGAGCCTTGAGAGAGGAAGGGTTGGTTGTGCCCTCATCCTTT
CTTGTTGGGGATGTGGTTGATTTCATCACGAGAATGAGTAAGTTAGAACG
ATACAGTGGTGTGGGCTCTGGGGAGGGAGGGAGCGAGGGAGGGATAGGGG
GGGAAGCACGGTGTCGGTCACTTGAACGGATTTTCGTCACGGATTGTGGA
AGATTGCTTGGGTACGTGACTTCGATGGACTTGTTGGTGCAGGAACGAAC
GGCGTCTCTGCTCGGTATAGTGAGGCCGTGTGAGGTTCTTGTGAAGGATA
CGGACGAATACGACGATGCGATATTAGCGATGAGGAGGAAGAGGCTGACG
TACGCGCCAGTGGTGACGAAGGAGGAGGTGGTGGTGGGGATCATTACTCC
CTCAGACATGCTGAACGAGATGGAGCTGGAGGCGACGGATGACGTGAGCA
GGTTCTCAGGGAGCGGGCGGGGGTCAGAGTCGTTTTTTGGCACCTCTGTG
TTGCAGGTGGTGACGGCGAGGGCCAGTTGGTTGGTTAGCCTGCTGATGCT
CCAGAGTTTGAGCTCGATTATTTTGACGCATTTCTCGGTGTTGATTGAGC
GACATTTGGTGATTGCCTTGTTTCTGACGATGTTGACAGGGACAGCGGGG
AATGCAGGGAACCAGAGCAGCGCGATGGTGATTCGTGGGATTGCTACGGG
GGAGATTAACAGGAAAAATAGTTGGCGGGTGGTTTGGAGGGAGGTGAAGG
CGGCGTTGCTGATGAGTGTGTTGTTGGCCGTCGCGGCGTTTGTCCGCGTG
TACATCACGCCGGGGAGCACCTTCATGTCAACTGTGGCCGTTACTCTTGC
GTTGAGCGTGACGGTTGTGGGTGCTTGTGCGTTTGGGACGGTGGCGCCGC
TGGTCATGGATCGATTGGGTGTGGATCCCGCGAATTGCGCGTCGCCTGCC
CTTAGTACCATTGTGGATGTTGGGGGGGTGCTGGTGTTATGTGCTATTTC
GAGTGTTTTGCTTGGATAGGGGGCCGGAGGCGTCGTACTTTGTGCAAAGA
TCGATGGAGAGACAGAGGTAGAGGGGGGGGAGAGAGAGGGGCTAAGATGG
GTGAGATGAACAACGAAAGAGGGAAGATGCAGACTGCTGCCTGTGTACAA
AACTAAATATTAATCGAATCGGGGAGGGGAAGAAGAAAAGAAAGAAAAGA
ATAAAAAAAAATAAGAAGTAGAAATTGTGTGGTGACGCGAAAAATAAGAA
ACAAAGGCAACAGCCCAAAACAGTGC
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protein sequence of jgi.p|Nanoce1779_2|628130

>mRNA_1953-protein ID=mRNA_1953-protein|Name=jgi.p|Nanoce1779_2|628130|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MGLNAMDKVSINMTLAANLRAAAIEAGREGGTAGGGYGGREGAKECPVEL
IAPCAVPSASLKDYGALREEGLVVPSSFLVGDVVDFITRMSKLERYSGVG
SGEGGSEGGIGGEARCRSLERIFVTDCGRLLGYVTSMDLLVQERTASLLG
IVRPCEVLVKDTDEYDDAILAMRRKRLTYAPVVTKEEVVVGIITPSDMLN
EMELEATDDVSRFSGSGRGSESFFGTSVLQVVTARASWLVSLLMLQSLSS
IILTHFSVLIERHLVIALFLTMLTGTAGNAGNQSSAMVIRGIATGEINRK
NSWRVVWREVKAALLMSVLLAVAAFVRVYITPGSTFMSTVAVTLALSVTV
VGACAFGTVAPLVMDRLGVDPANCASPALSTIVDVGGVLVLCAISSVLLG
*
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mRNA from alignment at scaffold_4:428978..430503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1953 ID=mRNA_1953|Name=jgi.p|Nanoce1779_2|628130|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp|location=Sequence derived from alignment at scaffold_4:428978..430503+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCAGAACCGGCGGCA
GAAATTGCACGAACATATGGGTTTAAATGCCATGGACAAGGTAAGTATCA
ACATGACCCTCGCAGCAAATCTCCGTGCCGCCGCCATCGAAGCCGGGCGA
GAAGGAGGGACGGCTGGAGGAGGGTATGGAGGAAGGGAGGGAGCGAAGGA
GTGCCCTGTGGAGCTGATAGCTCCGTGCGCCGTGCCATCAGCGTCGCTTA
AGGATTATGGAGCCTTGAGAGAGGAAGGGTTGGTTGTGCCCTCATCCTTT
CTTGTTGGGGATGTGGTTGATTTCATCACGAGAATGAGTAAGTTAGAACG
ATACAGTGGTGTGGGCTCTGGGGAGGGAGGGAGCGAGGGAGGGATAGGGG
GGGAAGCACGGTGTCGGTCACTTGAACGGATTTTCGTCACGGATTGTGGA
AGATTGCTTGGGTACGTGACTTCGATGGACTTGTTGGTGCAGGAACGAAC
GGCGTCTCTGCTCGGTATAGTGAGGCCGTGTGAGGTTCTTGTGAAGGATA
CGGACGAATACGACGATGCGATATTAGCGATGAGGAGGAAGAGGCTGACG
TACGCGCCAGTGGTGACGAAGGAGGAGGTGGTGGTGGGGATCATTACTCC
CTCAGACATGCTGAACGAGATGGAGCTGGAGGCGACGGATGACGTGAGCA
GGTTCTCAGGGAGCGGGCGGGGGTCAGAGTCGTTTTTTGGCACCTCTGTG
TTGCAGGTGGTGACGGCGAGGGCCAGTTGGTTGGTTAGCCTGCTGATGCT
CCAGAGTTTGAGCTCGATTATTTTGACGCATTTCTCGGTGTTGATTGAGC
GACATTTGGTGATTGCCTTGTTTCTGACGATGTTGACAGGGACAGCGGGG
AATGCAGGGAACCAGAGCAGCGCGATGGTGATTCGTGGGATTGCTACGGG
GGAGATTAACAGGAAAAATAGTTGGCGGGTGGTTTGGAGGGAGGTGAAGG
CGGCGTTGCTGATGAGTGTGTTGTTGGCCGTCGCGGCGTTTGTCCGCGTG
TACATCACGCCGGGGAGCACCTTCATGTCAACTGTGGCCGTTACTCTTGC
GTTGAGCGTGACGGTTGTGGGTGCTTGTGCGTTTGGGACGGTGGCGCCGC
TGGTCATGGATCGATTGGGTGTGGATCCCGCGAATTGCGCGTCGCCTGCC
CTTAGTACCATTGTGGATGTTGGGGGGGTGCTGGTGTTATGTGCTATTTC
GAGTGTTTTGCTTGGATAGGGGGCCGGAGGCGTCGTACTTTGTGCAAAGA
TCGATGGAGAGACAGAGGTAGAGGGGGGGGAGAGAGAGGGGCTAAGATGG
GTGAGATGAACAACGAAAGAGGGAAGATGCAGACTGCTGCCTGTGTACAA
AACTAAATATTAATCGAATCGGGGAGGGGAAGAAGAAAAGAAAGAAAAGA
ATAAAAAAAAATAAGAAGTAGAAATTGTGTGGTGACGCGAAAAATAAGAA
ACAAAGGCAACAGCCCAAAACAGTGC
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Coding sequence (CDS) from alignment at scaffold_4:428978..430503+

>mRNA_1953 ID=mRNA_1953|Name=jgi.p|Nanoce1779_2|628130|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at scaffold_4:428978..430503+ (Nannochloropsis oceanica)
ATGGGTTTAAATGCCATGGACAAGGTAAGTATCAACATGACCCTCGCAGC
AAATCTCCGTGCCGCCGCCATCGAAGCCGGGCGAGAAGGAGGGACGGCTG
GAGGAGGGTATGGAGGAAGGGAGGGAGCGAAGGAGTGCCCTGTGGAGCTG
ATAGCTCCGTGCGCCGTGCCATCAGCGTCGCTTAAGGATTATGGAGCCTT
GAGAGAGGAAGGGTTGGTTGTGCCCTCATCCTTTCTTGTTGGGGATGTGG
TTGATTTCATCACGAGAATGAGTAAGTTAGAACGATACAGTGGTGTGGGC
TCTGGGGAGGGAGGGAGCGAGGGAGGGATAGGGGGGGAAGCACGGTGTCG
GTCACTTGAACGGATTTTCGTCACGGATTGTGGAAGATTGCTTGGGTACG
TGACTTCGATGGACTTGTTGGTGCAGGAACGAACGGCGTCTCTGCTCGGT
ATAGTGAGGCCGTGTGAGGTTCTTGTGAAGGATACGGACGAATACGACGA
TGCGATATTAGCGATGAGGAGGAAGAGGCTGACGTACGCGCCAGTGGTGA
CGAAGGAGGAGGTGGTGGTGGGGATCATTACTCCCTCAGACATGCTGAAC
GAGATGGAGCTGGAGGCGACGGATGACGTGAGCAGGTTCTCAGGGAGCGG
GCGGGGGTCAGAGTCGTTTTTTGGCACCTCTGTGTTGCAGGTGGTGACGG
CGAGGGCCAGTTGGTTGGTTAGCCTGCTGATGCTCCAGAGTTTGAGCTCG
ATTATTTTGACGCATTTCTCGGTGTTGATTGAGCGACATTTGGTGATTGC
CTTGTTTCTGACGATGTTGACAGGGACAGCGGGGAATGCAGGGAACCAGA
GCAGCGCGATGGTGATTCGTGGGATTGCTACGGGGGAGATTAACAGGAAA
AATAGTTGGCGGGTGGTTTGGAGGGAGGTGAAGGCGGCGTTGCTGATGAG
TGTGTTGTTGGCCGTCGCGGCGTTTGTCCGCGTGTACATCACGCCGGGGA
GCACCTTCATGTCAACTGTGGCCGTTACTCTTGCGTTGAGCGTGACGGTT
GTGGGTGCTTGTGCGTTTGGGACGGTGGCGCCGCTGGTCATGGATCGATT
GGGTGTGGATCCCGCGAATTGCGCGTCGCCTGCCCTTAGTACCATTGTGG
ATGTTGGGGGGGTGCTGGTGTTATGTGCTATTTCGAGTGTTTTGCTTGGA
TAG
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Synonyms
Publications