jgi.p|Nanoce1779_2|578512, mRNA_1950 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578512
Unique Name	mRNA_1950
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2669
Alignment location	scaffold_4:423488..426156 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578598
Track	FilteredModels2
ProteinId	578512

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:423488..426156 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578512	gene_1950	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578512	mRNA_1950-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1950	CDS_1950	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:423488..426156+
coding sequence from alignment at scaffold_4:423488..426156+

mRNA sequence

>mRNA_1950 ID=mRNA_1950|Name=jgi.p|Nanoce1779_2|578512|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp
ACAGCAATTACTAGCACAAGTAAATTCGTTTCCCGTTATCATGATCATCC
AGGCCGGCGCCGTTAAAATTCTGGCCAAGGACGTGGTCTCCATCGCCAAA
ACTGCCGGAGACGCCATCATGGCCATCTACTCCTTCCCTGACACGGTCAG
CTGGGACGTCAAAGCCAAGTCCGATGACTCCCCCCTGACCGCCGCGGACT
TAGCAGCCAACAATCTGATTTGTGTGTCCCTGAAGGAGAAGTACCCTTCC
ATCCCCATAGTCTCGGAAGAAAATAAGCTTTTGCCCTACGACGAACGCAG
CCAATGGCCTTACTACTGGTGCATCGACCCTTTGGACGGGACTAAGGAAT
TTCTCAAGCGCAACGGTCAGTTCACGGTGAACATTGGCTTGTGTCAAGGC
AATTCTCCTATATTCGGGGTGGTACACGTGCCGGCCATGGAGCCGTCCAA
GACATATTTTGGTGCCAAGGGACAAGGGGCCTTCGTGGAGGTTGCGGGCG
GGGAATCCATCCCTATCCAGTGCAAGGAATTCAGCGAGACTGACTCGGGG
CTTGCGATTGTGGCATCGGCATCGCACAACACCCCGGAGACAGAGGCCTT
TATTAGTAAATATGAGGAGCCGACGCTCAAGGCGTTGGGATCGTCATTAA
AATTGCTGATGGTGGCAGAGGGCGAGGCCCACGTGTACCCGCGCTTGGCC
CCCACCTGTGAATGGGACACGTGTGCATCGCATGCCATTGTGGAGGCGGC
GGGAGGGGAAGTGCTGCAGGCAGAGGGAGGGAAGGCTTGCACCCCCGGGG
TTCCGGTGGCGTATAATAAGCCCGAGGCGTTGAATCCATTTTTTATTGTG
TACGGAAAGAGGCGTAAGTGAGAGGGGAAGAGAAGGAACGAAATGGGAAG
GTGGGAAAAGGAGCTTGATGATTGCATGAGTAGAAAGTAAGTGTTGCGGC
TGTCGCTCTTTCTTGGCCCACCGGCGCCTCGGCCCCAGGAAAGAGAAAGC
AAGAAAGTGGATAGAGGTGGGTAGAGAGGCAGGTGGACATAGTTAGTTGT
TTGTGTGCATTCTGCTGACAGCGCCTCTTTGATGTGCTTCCATATAAAGT
TCTTTTGAAGGTAAATCAACATCAAAAACGACGACAAGAACATGGCTCGT
CAGCACCAACCCCAACCCAACCAAACAGTAGCCGAGATCAAGGTGTCGAA
ATTTGATCACATTGCTTTCCTAATCATTTCATGCTATGACTCACCCTCCT
TGCGCATCTTCCCATCCCTCCTCCCCTTCCTCTTTCATTTCCTCCTCCTT
CCTCAATTGTTCTTCAATTTCCTCCATCCTCGCATGGACCAAAGTCATAT
TGTCCTCCCTTTCCGTCACTCCCAAAAGTTTCCCACACACCTCCTTCGCA
TCCATCCACCTCTCCCTCTCCATCAAACACAGGCTCAACCCATTCAGCAT
TCTCCTCTCCATCTGGCCTTCATCCAACTCCTGCAAAATCCGACAACACA
ACCGATAGCTCAGAATCGCGTCGTCACATTTGTGCAAATCTTTCAGCACC
GTTGCATAATTCCCCAACGCCCGTGCTTCCATCAACCTTCTCCCCCCACT
CGCCGAGGAAAACGAAGCCAATCGGGCAAGTTGCACCACCCGCCTGAACT
GCAATGTGGCCTCCTCTAGCTTACCCTCCCTATACCATCCCTTCCCTTGC
TCCAGCTCCTGGTCCAGCATACCCGGCGTTACGTCTTGCCAGAAATCATG
CTCGAGCGACAACCGTTCAAATTCCCTGAGAATCAACCGTCGCTCGGCCG
CATTGTCAGTCAACGCAAGCAGCTGCTCGAAGTGCTCTAAGACTAAATTG
TACGCGTGGACGCTCAAATAGAACTGCGTAAGCTGGTTATGCACGTACCG
TAAGGGTGCAAAATACTCTCCTATATCTTCGGAAATAGGGACCTGCCGTA
GGAGTAGGTGGCCCGCCCTGACAGAAAGCTCGTACCACACGCTCGCTTCT
TTCATGAGACCCATTTCTTGCAGTATTGTGCCCTTTACTTTGGCTGCACG
GGCCTGCATGTCTGCCTCTACCATGGTGGCGTATTCGGCCCCCGCGACGC
CCAAGACGTCATCCAACAGACGGAGAGCTTCCTCGTATTTCCCCGACGCA
GTGGACAGCATTGCTTTGTTTAGTAAGGTGGCGGCTTCGTCCAAGGAAGA
GACAGAAGACATGGTGTGGAGCAAACGGAGGCGTTGTCGCATTTCCAGTT
CAGAAGGCTCGTGGCCTTCGGTTTCCTCTTCTTCATCCTCCTCCTCCTCC
TCCTCCTCATCATCATTATCATCATCATCGTCGTCCTCATCCTCATCATT
GAGAATATCGTCGTCGTCGTCGTCGTTGTCGTCGTCAGGGGAGTTGCTGC
TACCACTCCTCCTCCGCCTTCTCCTTCTCCTCCTCCCTTGCACTTTCCCC
CCGGAGGATGCGAGCGTCGTCTGACTTCTTACACCATCATCCTCCTCGTC
ATCGTCCTCCTCATCGTCCGCATCCTCGTCCTCTCCATCCAAATTTCTGT
GTGCACGCTCATCTCTTCTCACCTCTTCCTCCCTCTCTAGTTCGGCCTCG
TCCTCCTCCCCCTCCCCCCCTTCCTCATCCTCCCAGTTCCCCTCCGGTGA
AAATACCGGCGAGTCCATC

protein sequence of jgi.p|Nanoce1779_2|578512

>mRNA_1950-protein ID=mRNA_1950-protein|Name=jgi.p|Nanoce1779_2|578512|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MIIQAGAVKILAKDVVSIAKTAGDAIMAIYSFPDTVSWDVKAKSDDSPLT
AADLAANNLICVSLKEKYPSIPIVSEENKLLPYDERSQWPYYWCIDPLDG
TKEFLKRNGQFTVNIGLCQGNSPIFGVVHVPAMEPSKTYFGAKGQGAFVE
VAGGESIPIQCKEFSETDSGLAIVASASHNTPETEAFISKYEEPTLKALG
SSLKLLMVAEGEAHVYPRLAPTCEWDTCASHAIVEAAGGEVLQAEGGKAC
TPGVPVAYNKPEALNPFFIVYGKRRK*

mRNA from alignment at scaffold_4:423488..426156+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1950 ID=mRNA_1950|Name=jgi.p|Nanoce1779_2|578512|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp|location=Sequence derived from alignment at scaffold_4:423488..426156+ (Nannochloropsis oceanica)
ACAGCAATTACTAGCACAAGTAAATTCGTTTCCCGTTATCATGATCATCC
AGGCCGGCGCCGTTAAAATTCTGGCCAAGGACGTGGTCTCCATCGCCAAA
ACTGCCGGAGACGCCATCATGGCCATCTACTCCTTCCCTGACACGGTCAG
CTGGGACGTCAAAGCCAAGTCCGATGACTCCCCCCTGACCGCCGCGGACT
TAGCAGCCAACAATCTGATTTGTGTGTCCCTGAAGGAGAAGTACCCTTCC
ATCCCCATAGTCTCGGAAGAAAATAAGCTTTTGCCCTACGACGAACGCAG
CCAATGGCCTTACTACTGGTGCATCGACCCTTTGGACGGGACTAAGGAAT
TTCTCAAGCGCAACGGTCAGTTCACGGTGAACATTGGCTTGTGTCAAGGC
AATTCTCCTATATTCGGGGTGGTACACGTGCCGGCCATGGAGCCGTCCAA
GACATATTTTGGTGCCAAGGGACAAGGGGCCTTCGTGGAGGTTGCGGGCG
GGGAATCCATCCCTATCCAGTGCAAGGAATTCAGCGAGACTGACTCGGGG
CTTGCGATTGTGGCATCGGCATCGCACAACACCCCGGAGACAGAGGCCTT
TATTAGTAAATATGAGGAGCCGACGCTCAAGGCGTTGGGATCGTCATTAA
AATTGCTGATGGTGGCAGAGGGCGAGGCCCACGTGTACCCGCGCTTGGCC
CCCACCTGTGAATGGGACACGTGTGCATCGCATGCCATTGTGGAGGCGGC
GGGAGGGGAAGTGCTGCAGGCAGAGGGAGGGAAGGCTTGCACCCCCGGGG
TTCCGGTGGCGTATAATAAGCCCGAGGCGTTGAATCCATTTTTTATTGTG
TACGGAAAGAGGCGTAAGTGAGAGGGGAAGAGAAGGAACGAAATGGGAAG
GTGGGAAAAGGAGCTTGATGATTGCATGAGTAGAAAGTAAGTGTTGCGGC
TGTCGCTCTTTCTTGGCCCACCGGCGCCTCGGCCCCAGGAAAGAGAAAGC
AAGAAAGTGGATAGAGGTGGGTAGAGAGGCAGGTGGACATAGTTAGTTGT
TTGTGTGCATTCTGCTGACAGCGCCTCTTTGATGTGCTTCCATATAAAGT
TCTTTTGAAGGTAAATCAACATCAAAAACGACGACAAGAACATGGCTCGT
CAGCACCAACCCCAACCCAACCAAACAGTAGCCGAGATCAAGGTGTCGAA
ATTTGATCACATTGCTTTCCTAATCATTTCATGCTATGACTCACCCTCCT
TGCGCATCTTCCCATCCCTCCTCCCCTTCCTCTTTCATTTCCTCCTCCTT
CCTCAATTGTTCTTCAATTTCCTCCATCCTCGCATGGACCAAAGTCATAT
TGTCCTCCCTTTCCGTCACTCCCAAAAGTTTCCCACACACCTCCTTCGCA
TCCATCCACCTCTCCCTCTCCATCAAACACAGGCTCAACCCATTCAGCAT
TCTCCTCTCCATCTGGCCTTCATCCAACTCCTGCAAAATCCGACAACACA
ACCGATAGCTCAGAATCGCGTCGTCACATTTGTGCAAATCTTTCAGCACC
GTTGCATAATTCCCCAACGCCCGTGCTTCCATCAACCTTCTCCCCCCACT
CGCCGAGGAAAACGAAGCCAATCGGGCAAGTTGCACCACCCGCCTGAACT
GCAATGTGGCCTCCTCTAGCTTACCCTCCCTATACCATCCCTTCCCTTGC
TCCAGCTCCTGGTCCAGCATACCCGGCGTTACGTCTTGCCAGAAATCATG
CTCGAGCGACAACCGTTCAAATTCCCTGAGAATCAACCGTCGCTCGGCCG
CATTGTCAGTCAACGCAAGCAGCTGCTCGAAGTGCTCTAAGACTAAATTG
TACGCGTGGACGCTCAAATAGAACTGCGTAAGCTGGTTATGCACGTACCG
TAAGGGTGCAAAATACTCTCCTATATCTTCGGAAATAGGGACCTGCCGTA
GGAGTAGGTGGCCCGCCCTGACAGAAAGCTCGTACCACACGCTCGCTTCT
TTCATGAGACCCATTTCTTGCAGTATTGTGCCCTTTACTTTGGCTGCACG
GGCCTGCATGTCTGCCTCTACCATGGTGGCGTATTCGGCCCCCGCGACGC
CCAAGACGTCATCCAACAGACGGAGAGCTTCCTCGTATTTCCCCGACGCA
GTGGACAGCATTGCTTTGTTTAGTAAGGTGGCGGCTTCGTCCAAGGAAGA
GACAGAAGACATGGTGTGGAGCAAACGGAGGCGTTGTCGCATTTCCAGTT
CAGAAGGCTCGTGGCCTTCGGTTTCCTCTTCTTCATCCTCCTCCTCCTCC
TCCTCCTCATCATCATTATCATCATCATCGTCGTCCTCATCCTCATCATT
GAGAATATCGTCGTCGTCGTCGTCGTTGTCGTCGTCAGGGGAGTTGCTGC
TACCACTCCTCCTCCGCCTTCTCCTTCTCCTCCTCCCTTGCACTTTCCCC
CCGGAGGATGCGAGCGTCGTCTGACTTCTTACACCATCATCCTCCTCGTC
ATCGTCCTCCTCATCGTCCGCATCCTCGTCCTCTCCATCCAAATTTCTGT
GTGCACGCTCATCTCTTCTCACCTCTTCCTCCCTCTCTAGTTCGGCCTCG
TCCTCCTCCCCCTCCCCCCCTTCCTCATCCTCCCAGTTCCCCTCCGGTGA
AAATACCGGCGAGTCCATC

Coding sequence (CDS) from alignment at scaffold_4:423488..426156+

>mRNA_1950 ID=mRNA_1950|Name=jgi.p|Nanoce1779_2|578512|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_4:423488..426156+ (Nannochloropsis oceanica)
ATGATCATCCAGGCCGGCGCCGTTAAAATTCTGGCCAAGGACGTGGTCTC
CATCGCCAAAACTGCCGGAGACGCCATCATGGCCATCTACTCCTTCCCTG
ACACGGTCAGCTGGGACGTCAAAGCCAAGTCCGATGACTCCCCCCTGACC
GCCGCGGACTTAGCAGCCAACAATCTGATTTGTGTGTCCCTGAAGGAGAA
GTACCCTTCCATCCCCATAGTCTCGGAAGAAAATAAGCTTTTGCCCTACG
ACGAACGCAGCCAATGGCCTTACTACTGGTGCATCGACCCTTTGGACGGG
ACTAAGGAATTTCTCAAGCGCAACGGTCAGTTCACGGTGAACATTGGCTT
GTGTCAAGGCAATTCTCCTATATTCGGGGTGGTACACGTGCCGGCCATGG
AGCCGTCCAAGACATATTTTGGTGCCAAGGGACAAGGGGCCTTCGTGGAG
GTTGCGGGCGGGGAATCCATCCCTATCCAGTGCAAGGAATTCAGCGAGAC
TGACTCGGGGCTTGCGATTGTGGCATCGGCATCGCACAACACCCCGGAGA
CAGAGGCCTTTATTAGTAAATATGAGGAGCCGACGCTCAAGGCGTTGGGA
TCGTCATTAAAATTGCTGATGGTGGCAGAGGGCGAGGCCCACGTGTACCC
GCGCTTGGCCCCCACCTGTGAATGGGACACGTGTGCATCGCATGCCATTG
TGGAGGCGGCGGGAGGGGAAGTGCTGCAGGCAGAGGGAGGGAAGGCTTGC
ACCCCCGGGGTTCCGGTGGCGTATAATAAGCCCGAGGCGTTGAATCCATT
TTTTATTGTGTACGGAAAGAGGCGTAAGTGA

Synonyms

Publications