jgi.p|Nanoce1779_2|576507, mRNA_195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576507
Unique NamemRNA_195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length846
Alignment locationscaffold_3:489455..490300 -

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Properties
Property NameValue
TranscriptId576593
TrackFilteredModels2
ProteinId576507
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:489455..490300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576507gene_195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576507mRNA_195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_195CDS_195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_195 ID=mRNA_195|Name=jgi.p|Nanoce1779_2|576507|organism=Nannochloropsis oceanica|type=mRNA|length=846bp
AGCAATGCCCCGCAGGATCATGGTCAGTGCACGTGGCGGGTGGTCTCTTC
GAAAAAATGTCCCCCCAAGAAGTTATCCCCAACGACGCATCAAAGCGTGA
GGTGGTCTTCTGGATGCCACCGCCTGCGCCACGTCTTTAAGACGCCCCCA
TCACCCACAGCCCTATTTGTGTATTCAAACTAGCAGTAAAGTTGCTGTGC
AGGATACGCACCTTTCGCGTTTTATCTCCTCCGAGCCCTGTCTCTTCCAA
GCCCACCACTCCTCTCACACCATCCCCGACACACCCAACACGATGCACAG
TACACATGGCCTTCCTCGCACAACAAAGACAATTCCTCCTCTTGGTAGCA
GCCTGCCTGCTACTGGCTGCTACCAAGACCCACGCATTCCTGGCCCCCGT
CGGCCGCCTACCTGCCTTGCATGCACGTGCTCCTTTGTCAACACAACAAC
AAAACCATATGCAGCAACTGGCCGCTTCCACCTCATCTACGCGCAGACGG
GACCTCCTAAAAATGGAGGTCGATCCTGCGGTCATCGGAGGTGTAATTGC
GGGTGTTGTTGGCGTGAGTTTGGGGGTAGGTGCCATGATATTCACAGAGA
AGCAAACCGTGCGACGGGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCC
GCACGGGCTCAAAGGGCTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAAC
AGTGCAGTCTTCGGAACCGACGTCACAAGGAGGACAAGGAGGGTTGACAG
AAGATGAGGACGGCTGGTAATTTTGAAAAAGGGAGTTATTGTTGGGGAAA
GGGGCGGGAGGGAGGATGGGGAGGAGAAGTGAGGGAGATTGTCGGG
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protein sequence of jgi.p|Nanoce1779_2|576507

>mRNA_195-protein ID=mRNA_195-protein|Name=jgi.p|Nanoce1779_2|576507|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MAFLAQQRQFLLLVAACLLLAATKTHAFLAPVGRLPALHARAPLSTQQQN
HMQQLAASTSSTRRRDLLKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQ
TVRREERKAADKAKAARAQRAQAAASGTASATVQSSEPTSQGGQGGLTED
EDGW*
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mRNA from alignment at scaffold_3:489455..490300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_195 ID=mRNA_195|Name=jgi.p|Nanoce1779_2|576507|organism=Nannochloropsis oceanica|type=mRNA|length=846bp|location=Sequence derived from alignment at scaffold_3:489455..490300- (Nannochloropsis oceanica)
AGCAATGCCCCGCAGGATCATGGTCAGTGCACGTGGCGGGTGGTCTCTTC
GAAAAAATGTCCCCCCAAGAAGTTATCCCCAACGACGCATCAAAGCGTGA
GGTGGTCTTCTGGATGCCACCGCCTGCGCCACGTCTTTAAGACGCCCCCA
TCACCCACAGCCCTATTTGTGTATTCAAACTAGCAGTAAAGTTGCTGTGC
AGGATACGCACCTTTCGCGTTTTATCTCCTCCGAGCCCTGTCTCTTCCAA
GCCCACCACTCCTCTCACACCATCCCCGACACACCCAACACGATGCACAG
TACACATGGCCTTCCTCGCACAACAAAGACAATTCCTCCTCTTGGTAGCA
GCCTGCCTGCTACTGGCTGCTACCAAGACCCACGCATTCCTGGCCCCCGT
CGGCCGCCTACCTGCCTTGCATGCACGTGCTCCTTTGTCAACACAACAAC
AAAACCATATGCAGCAACTGGCCGCTTCCACCTCATCTACGCGCAGACGG
GACCTCCTAAAAATGGAGGTCGATCCTGCGGTCATCGGAGGTGTAATTGC
GGGTGTTGTTGGCGTGAGTTTGGGGGTAGGTGCCATGATATTCACAGAGA
AGCAAACCGTGCGACGGGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCC
GCACGGGCTCAAAGGGCTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAAC
AGTGCAGTCTTCGGAACCGACGTCACAAGGAGGACAAGGAGGGTTGACAG
AAGATGAGGACGGCTGGTAATTTTGAAAAAGGGAGTTATTGTTGGGGAAA
GGGGCGGGAGGGAGGATGGGGAGGAGAAGTGAGGGAGATTGTCGGG
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Coding sequence (CDS) from alignment at scaffold_3:489455..490300-

>mRNA_195 ID=mRNA_195|Name=jgi.p|Nanoce1779_2|576507|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_3:489455..490300- (Nannochloropsis oceanica)
ATGGCCTTCCTCGCACAACAAAGACAATTCCTCCTCTTGGTAGCAGCCTG
CCTGCTACTGGCTGCTACCAAGACCCACGCATTCCTGGCCCCCGTCGGCC
GCCTACCTGCCTTGCATGCACGTGCTCCTTTGTCAACACAACAACAAAAC
CATATGCAGCAACTGGCCGCTTCCACCTCATCTACGCGCAGACGGGACCT
CCTAAAAATGGAGGTCGATCCTGCGGTCATCGGAGGTGTAATTGCGGGTG
TTGTTGGCGTGAGTTTGGGGGTAGGTGCCATGATATTCACAGAGAAGCAA
ACCGTGCGACGGGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCCGCACG
GGCTCAAAGGGCTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAACAGTGC
AGTCTTCGGAACCGACGTCACAAGGAGGACAAGGAGGGTTGACAGAAGAT
GAGGACGGCTGGTAA
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Synonyms
Publications