jgi.p|Nanoce1779_2|578507, mRNA_1949 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578507
Unique NamemRNA_1949
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length309
Alignment locationscaffold_4:421801..422368 +

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Properties
Property NameValue
TranscriptId578593
TrackFilteredModels2
ProteinId578507
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:421801..422368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578507gene_1949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578507mRNA_1949-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1949CDS_1949Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1949 ID=mRNA_1949|Name=jgi.p|Nanoce1779_2|578507|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
TGGCTGCCGCAGCGGCCCGAGTTGTACGATCATCCTGCTGTGGTTGCCTT
GTTCCATTCCGCGCCCTCTTGTTGCTACTGCTGTGGCTGCTGCTGATGCT
GCTACCGCTGCTGCTGCTGCTGGCGGCCCCGTTGTGGTATTCGTCATGGC
GGGCCATTATTGCATTCGCTGTAGCTCGCTGCAGCATCCTGGTCCTTGCC
GTAGTTTGGCGCTGGGTTGGCGGCCCTCAGGCTTGCCCGGATGATTTGAA
GTGTGTGCTCGTGCTGCGGCACTTGGTTCCAATTCTACCCTCTCAGTACC
CTGTTTGCT
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protein sequence of jgi.p|Nanoce1779_2|578507

>mRNA_1949-protein ID=mRNA_1949-protein|Name=jgi.p|Nanoce1779_2|578507|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MLLPLLLLLAAPLWYSSWRAIIAFAVARCSILVLAVVWRWVGGPQACPDD
LKCVLVLRHLVPILPSQYPVC
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mRNA from alignment at scaffold_4:421801..422368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1949 ID=mRNA_1949|Name=jgi.p|Nanoce1779_2|578507|organism=Nannochloropsis oceanica|type=mRNA|length=568bp|location=Sequence derived from alignment at scaffold_4:421801..422368+ (Nannochloropsis oceanica)
TGGCTGCCGCAGCGGCCCGAGTTGTACGATCATCCTGCTGTGGTTGCCTT
GTTCCATTCCGCGCCCTCTTGTTGCTACTGCTGTGGCTGCTGCTGATGCT
GCTACCGCTGCTGCTGCTGCTGGCGGCCCCGTTGTGGTATTCGTCATGGC
GGGCCATTATTGCATTCGCTGTAGCTCGCTGTGGACGTAGCGTAAGTAGA
GAAGAAGATTAAAAATGCGAAAAACATATGTATAGATGGAAGTGAGGAAA
AGAGGGACCTGCAGCATCCTGGTCCTTGCCGTAGTTTGGCGCTGGGTTGG
CGGCCCTCAGGCTTGCCCGGATGATTTGAAGTGTGTGCTCGTGCTGCGGC
TGGATAAGTTGCGAGGTGGATGGTGGAAGGAAAATTTGAAAGAAGAGTGA
CAGGAGGGAGGAGAAGATACAGGGCTGCGCATTTTCGTCGTCCTCCGGCA
TTATTTGCATTATGTGCTTAAGAAAGGAAGGGGGGGGAGGAGGTCCGCCC
GATGGCGAGTTGCCATCGCCAAACTCACCACTTGGTTCCAATTCTACCCT
CTCAGTACCCTGTTTGCT
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Coding sequence (CDS) from alignment at scaffold_4:421801..422368+

>mRNA_1949 ID=mRNA_1949|Name=jgi.p|Nanoce1779_2|578507|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_4:421801..422368+ (Nannochloropsis oceanica)
ATGCTGCTACCGCTGCTGCTGCTGCTGGCGGCCCCGTTGTGGTATTCGTC
ATGGCGGGCCATTATTGCATTCGCTGTAGCTCGCTGCAGCATCCTGGTCC
TTGCCGTAGTTTGGCGCTGGGTTGGCGGCCCTCAGGCTTGCCCGGATGAT
TTGAAGTGTGTGCTCGTGCTGCGGCACTTGGTTCCAATTCTACCCTCTCA
GTACCCTGTTTGCTATGCTGCTACCGCTGCTGCTGCTGCTGGCGGCCCCG
TTGTGGTATTCGTCATGGCGGGCCATTATTGCATTCGCTGTAGCTCGCTG
CAGCATCCTGGTCCTTGCCGTAGTTTGGCGCTGGGTTGGCGGCCCTCAGG
CTTGCCCGGATGATTTGAAGTGTGTGCTCGTGCTGCGGCACTTGGTTCCA
ATTCTACCCTCTCAGTACCCTGTTTGCTATGCTGCTACCGCTGCTGCTGC
TGCTGGCGGCCCCGTTGTGGTATTCGTCATGGCGGGCCATTATTGCATTC
GCTGTAGCTCGCTGCAGCATCCTGGTCCTTGCCGTAGTTTGGCGCTGGGT
TGGCGGCCCTCAGGCTTGCCCGGATGATTTGAAGTGTGTGCTCGTGCTGC
GGCACTTGGTTCCAATTCTACCCTCTCAGTACCCTGTTTGCT
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Synonyms
Publications