jgi.p|Nanoce1779_2|563612, mRNA_1948 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563612
Unique NamemRNA_1948
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length975
Alignment locationscaffold_4:420017..420991 -

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Properties
Property NameValue
TranscriptId563698
TrackFilteredModels2
ProteinId563612
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:420017..420991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563612gene_1948Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1948CDS_1948Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563612mRNA_1948-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1948 ID=mRNA_1948|Name=jgi.p|Nanoce1779_2|563612|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGGAGGAGTTGAAGCGGTTGTTTGACAGGGAAGATAGGCGACGACGGCG
GCCTGGAGAAAGGGAGGGAGGAGGGGCATATGATGATTCGGATGGGGTGT
ATCGGTGCCCGCGTTGTCATTGGGAGATGTTGGAGGGACGTTGCGCCCGG
GGTTGTGGGGATGGTGAGGACGAGGGGGAGGAGGAGGAGGATATGTTGGT
GGTGGCTGATAGTAGCGAATACGAACACGAAGGATTGGCGAGCATGCGGC
CGTATCATGATGAGTATTCGAGGATGGAGAGAAGGATAGTCGAAACTACA
CGTCGGATGGAGCACGGGTCATTTCAGCCCGACGTCCCTTCTAGTGGTGG
TGGTAGCAGTAGGCAGCGTCGACGACGAAGGGAAGGAAGGGAAGAAGTGT
CAGGGGAACAGGAGGGCGAAGAGGCAGAGAATGAACTAGGCATTGGCTTC
GCTCGCCGGCGACTGCAATGGTTGCGGCGGCTACAACGTCGGCAAAGAAC
GGAGGTGGAGGAGGAGGAGGTGGGAGAAGAAGAGGAAGACGAGGAGGAGA
GCGAGGAAGAAGAAGAGAGTGGTTCAGAGGAGGACGATGGGCGGCCTTCA
TGGATGGTGGGGCGGCCGCAAATGTCAAGGCGGTGTCAGCGACAAGAGGA
GTATCTTCTCGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGTGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAAGAAGGAGGAGAGGAAGAGGAGGACAGGGAGGGA
GGGAGTTCTGAAGGAGAGCACGGAGAGGACTATGAATATGTCGTGAGTGG
TAACGAGAGCGAGGTAATTGCATAG
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protein sequence of jgi.p|Nanoce1779_2|563612

>mRNA_1948-protein ID=mRNA_1948-protein|Name=jgi.p|Nanoce1779_2|563612|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MEELKRLFDREDRRRRRPGEREGGGAYDDSDGVYRCPRCHWEMLEGRCAR
GCGDGEDEGEEEEDMLVVADSSEYEHEGLASMRPYHDEYSRMERRIVETT
RRMEHGSFQPDVPSSGGGSSRQRRRRREGREEVSGEQEGEEAENELGIGF
ARRRLQWLRRLQRRQRTEVEEEEVGEEEEDEEESEEEEESGSEEDDGRPS
WMVGRPQMSRRCQRQEEYLLEEEEEEEEEEEEEEEEEEGRRQIRGLFRAG
RNVGREAALWQRARDEEEEEEEEEEGEEEEEEEEEEEEEEGGEEEEDREG
GSSEGEHGEDYEYVVSGNESEVIA*
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mRNA from alignment at scaffold_4:420017..420991-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1948 ID=mRNA_1948|Name=jgi.p|Nanoce1779_2|563612|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at scaffold_4:420017..420991- (Nannochloropsis oceanica)
ATGGAGGAGTTGAAGCGGTTGTTTGACAGGGAAGATAGGCGACGACGGCG
GCCTGGAGAAAGGGAGGGAGGAGGGGCATATGATGATTCGGATGGGGTGT
ATCGGTGCCCGCGTTGTCATTGGGAGATGTTGGAGGGACGTTGCGCCCGG
GGTTGTGGGGATGGTGAGGACGAGGGGGAGGAGGAGGAGGATATGTTGGT
GGTGGCTGATAGTAGCGAATACGAACACGAAGGATTGGCGAGCATGCGGC
CGTATCATGATGAGTATTCGAGGATGGAGAGAAGGATAGTCGAAACTACA
CGTCGGATGGAGCACGGGTCATTTCAGCCCGACGTCCCTTCTAGTGGTGG
TGGTAGCAGTAGGCAGCGTCGACGACGAAGGGAAGGAAGGGAAGAAGTGT
CAGGGGAACAGGAGGGCGAAGAGGCAGAGAATGAACTAGGCATTGGCTTC
GCTCGCCGGCGACTGCAATGGTTGCGGCGGCTACAACGTCGGCAAAGAAC
GGAGGTGGAGGAGGAGGAGGTGGGAGAAGAAGAGGAAGACGAGGAGGAGA
GCGAGGAAGAAGAAGAGAGTGGTTCAGAGGAGGACGATGGGCGGCCTTCA
TGGATGGTGGGGCGGCCGCAAATGTCAAGGCGGTGTCAGCGACAAGAGGA
GTATCTTCTCGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGTGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAAGAAGGAGGAGAGGAAGAGGAGGACAGGGAGGGA
GGGAGTTCTGAAGGAGAGCACGGAGAGGACTATGAATATGTCGTGAGTGG
TAACGAGAGCGAGGTAATTGCATAG
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Coding sequence (CDS) from alignment at scaffold_4:420017..420991-

>mRNA_1948 ID=mRNA_1948|Name=jgi.p|Nanoce1779_2|563612|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_4:420017..420991- (Nannochloropsis oceanica)
ATGGAGGAGTTGAAGCGGTTGTTTGACAGGGAAGATAGGCGACGACGGCG
GCCTGGAGAAAGGGAGGGAGGAGGGGCATATGATGATTCGGATGGGGTGT
ATCGGTGCCCGCGTTGTCATTGGGAGATGTTGGAGGGACGTTGCGCCCGG
GGTTGTGGGGATGGTGAGGACGAGGGGGAGGAGGAGGAGGATATGTTGGT
GGTGGCTGATAGTAGCGAATACGAACACGAAGGATTGGCGAGCATGCGGC
CGTATCATGATGAGTATTCGAGGATGGAGAGAAGGATAGTCGAAACTACA
CGTCGGATGGAGCACGGGTCATTTCAGCCCGACGTCCCTTCTAGTGGTGG
TGGTAGCAGTAGGCAGCGTCGACGACGAAGGGAAGGAAGGGAAGAAGTGT
CAGGGGAACAGGAGGGCGAAGAGGCAGAGAATGAACTAGGCATTGGCTTC
GCTCGCCGGCGACTGCAATGGTTGCGGCGGCTACAACGTCGGCAAAGAAC
GGAGGTGGAGGAGGAGGAGGTGGGAGAAGAAGAGGAAGACGAGGAGGAGA
GCGAGGAAGAAGAAGAGAGTGGTTCAGAGGAGGACGATGGGCGGCCTTCA
TGGATGGTGGGGCGGCCGCAAATGTCAAGGCGGTGTCAGCGACAAGAGGA
GTATCTTCTCGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGTGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAAGAAGGAGGAGAGGAAGAGGAGGACAGGGAGGGA
GGGAGTTCTGAAGGAGAGCACGGAGAGGACTATGAATATGTCGTGAGTGG
TAACGAGAGCGAGGTAATTGCATAG
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Synonyms
Publications