jgi.p|Nanoce1779_2|524649, mRNA_1946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524649
Unique NamemRNA_1946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length786
Alignment locationscaffold_4:413755..414974 -

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Properties
Property NameValue
TranscriptId524735
TrackFilteredModels2
ProteinId524649
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:413755..414974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524649gene_1946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524649mRNA_1946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1946CDS_1946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1946 ID=mRNA_1946|Name=jgi.p|Nanoce1779_2|524649|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCCA
GGTTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCGT
GCGTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTTG
CAGGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGTT
CCATAAGACCTTGGCCCATATCGCCGCCCAGCTCCTCGGCGTCCCCCGTG
TCCGCATTTTCCAAGATTCCCTTTTCGTCAAGCGTCCAGGAGACGATTCC
ACCCTCCTCCACACCGACTTGGGGACGGCGCCATTGGACACGAACGACTT
TATCACTGCCTGGATCCCCCTGACGCATGTCCCGGCGGTGGAAGAGGGAG
GAAGCCCGTTGCAGTTTTGCCAAGGCTCCCACATCGACATGGCCGCCCGC
TACTGGTACGACCCTCACGATAATGGCGATGGCGACGACACTGCCGCCCT
CCCTCCCCCCCTCCTTCGATACCCTGTGATGGATCACGCGCCTTTGGAGC
TGGGGGATGTAACTTGGCACCATGGCTGGTGCTTGCACGGGAGTCCAGGG
AATGAAAGGGAGGAGGAGAGGGTGGCTTTGACTGTGTGTTTCATGAGTGC
TGACGCAAAGGTGATGGCGAGTGATGTGCTTTTCGTCCCCGACGAGGAAG
ATAGCTTGTCCTACGAAGAGTGGGTTGGGGAGGTGGGCTTGGGAAACGTG
GTCGATCACAAGTTGACGCCCGTGGTGTGGCCGTGA
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protein sequence of jgi.p|Nanoce1779_2|524649

>mRNA_1946-protein ID=mRNA_1946-protein|Name=jgi.p|Nanoce1779_2|524649|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MTAFEQERCEALRHEVQVFFGEEAYEACTTTDACVAQLKKKDAEAITPFL
QVFNLWRRHPGIKELVFHKTLAHIAAQLLGVPRVRIFQDSLFVKRPGDDS
TLLHTDLGTAPLDTNDFITAWIPLTHVPAVEEGGSPLQFCQGSHIDMAAR
YWYDPHDNGDGDDTAALPPPLLRYPVMDHAPLELGDVTWHHGWCLHGSPG
NEREEERVALTVCFMSADAKVMASDVLFVPDEEDSLSYEEWVGEVGLGNV
VDHKLTPVVWP*
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mRNA from alignment at scaffold_4:413755..414974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1946 ID=mRNA_1946|Name=jgi.p|Nanoce1779_2|524649|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp|location=Sequence derived from alignment at scaffold_4:413755..414974- (Nannochloropsis oceanica)
ATGACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCCA
GGTTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCGT
GCGTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTTG
CAGGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGTT
CCATAAGGTGAGTGTGGTCGTCTGGCACTGAAGGAGGGGAAAGGGGGCGA
CGGGAAGGATGGTAGGGAAGGAGGTGTCGCAATGCTGGAAGGAGGGGAGT
GCTGGGTTTTCGTCTTGATAGAGACTGAGCTTTGATTTAGGTGCATCAAA
ACCGCACATTGAGCTTTGATTAAGGTGCATCGTCACGTGGTCCTAGGAAA
TTCAGCTTCCTGCAGATTGCAGCATACGCTCTCTCGTCCAGCCTCTCACT
CGTGCCCTCCCCCTGTCTCATCTTTTCCCTCCAAGACCTTGGCCCATATC
GCCGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTTCCAAGATTCCCT
TTTCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCCACACCGACTTGG
GGACGGCGCCATTGGACACGAACGACTTTATCACTGCCTGGATCCCCCTG
ACGCATGTCCCGGCGGTGGAAGAGGGAGGAAGCCCGTTGCAGTTTTGCCA
AGGGTGAGTGGGGTGGGGAGGGAGGGAAAAGAAGCGGTATTGATGAAGCG
TACTACGCTTTTTGTACTGATGACAAGTGGAGGATCCATGCATCTCCCTA
CCCGTTGAACTTCCCTCCTCTTTCCTTCCTTCCCCCTCCTTCCCTCCCTC
TTTCCGTAGCTCCCACATCGACATGGCCGCCCGCTACTGGTACGACCCTC
ACGATAATGGCGATGGCGACGACACTGCCGCCCTCCCTCCCCCCCTCCTT
CGATACCCTGTGATGGATCACGCGCCTTTGGAGCTGGGGGATGTAACTTG
GCACCATGGCTGGTGCTTGCACGGGAGTCCAGGGAATGAAAGGGAGGAGG
AGAGGGTGGCTTTGACTGTGTGTTTCATGAGTGCTGACGCAAAGGTGATG
GCGAGTGATGTGCTTTTCGTCCCCGACGAGGAAGATAGCTTGTCCTACGA
AGAGTGGGTTGGGGAGGTGGGCTTGGGAAACGTGGTCGATCACAAGTTGA
CGCCCGTGGTGTGGCCGTGA
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Coding sequence (CDS) from alignment at scaffold_4:413755..414974-

>mRNA_1946 ID=mRNA_1946|Name=jgi.p|Nanoce1779_2|524649|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_4:413755..414974- (Nannochloropsis oceanica)
CTCCCACATCGACATGGCCGCCCGCTACTGGTACGACCCTCACGATAATG
GCGATGGCGACGACACTGCCGCCCTCCCTCCCCCCCTCCTTCGATACCCT
GTGATGGATCACGCGCCTTTGGAGCTGGGGGATGTAACTTGGCACCATGG
CTGGTGCTTGCACGGGAGTCCAGGGAATGAAAGGGAGGAGGAGAGGGTGG
CTTTGACTGTGTGTTTCATGAGTGCTGACGCAAAGGTGATGGCGAGTGAT
GTGCTTTTCGTCCCCGACGAGGAAGATAGCTTGTCCTACGAAGAGTGGGT
TGGGGAGGTGGGCTTGGGAAACGTGGTCGATCACAAGTTGACGCCCGTGG
TGTGGCCGTGAACCTTGGCCCATATCGCCGCCCAGCTCCTCGGCGTCCCC
CGTGTCCGCATTTTCCAAGATTCCCTTTTCGTCAAGCGTCCAGGAGACGA
TTCCACCCTCCTCCACACCGACTTGGGGACGGCGCCATTGGACACGAACG
ACTTTATCACTGCCTGGATCCCCCTGACGCATGTCCCGGCGGTGGAAGAG
GGAGGAAGCCCGTTGCAGTTTTGCCAAGGATGACGGCCTTTGAGCAAGAA
CGATGCGAGGCATTAAGACATGAAGTCCAGGTTTTCTTCGGGGAGGAAGC
TTATGAGGCATGTACTACCACCGACGCGTGCGTGGCACAATTGAAAAAGA
AGGACGCAGAGGCCATCACGCCTTTTTTGCAGGTATTCAACCTGTGGCGG
CGACATCCGGGGATCAAAGAGTTGGTGTTCCATAAGCTCCCACATCGACA
TGGCCGCCCGCTACTGGTACGACCCTCACGATAATGGCGATGGCGACGAC
ACTGCCGCCCTCCCTCCCCCCCTCCTTCGATACCCTGTGATGGATCACGC
GCCTTTGGAGCTGGGGGATGTAACTTGGCACCATGGCTGGTGCTTGCACG
GGAGTCCAGGGAATGAAAGGGAGGAGGAGAGGGTGGCTTTGACTGTGTGT
TTCATGAGTGCTGACGCAAAGGTGATGGCGAGTGATGTGCTTTTCGTCCC
CGACGAGGAAGATAGCTTGTCCTACGAAGAGTGGGTTGGGGAGGTGGGCT
TGGGAAACGTGGTCGATCACAAGTTGACGCCCGTGGTGTGGCCGTGAACC
TTGGCCCATATCGCCGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTT
CCAAGATTCCCTTTTCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCC
ACACCGACTTGGGGACGGCGCCATTGGACACGAACGACTTTATCACTGCC
TGGATCCCCCTGACGCATGTCCCGGCGGTGGAAGAGGGAGGAAGCCCGTT
GCAGTTTTGCCAAGGATGACGGCCTTTGAGCAAGAACGATGCGAGGCATT
AAGACATGAAGTCCAGGTTTTCTTCGGGGAGGAAGCTTATGAGGCATGTA
CTACCACCGACGCGTGCGTGGCACAATTGAAAAAGAAGGACGCAGAGGCC
ATCACGCCTTTTTTGCAGGTATTCAACCTGTGGCGGCGACATCCGGGGAT
CAAAGAGTTGGTGTTCCATAAGCTCCCACATCGACATGGCCGCCCGCTAC
TGGTACGACCCTCACGATAATGGCGATGGCGACGACACTGCCGCCCTCCC
TCCCCCCCTCCTTCGATACCCTGTGATGGATCACGCGCCTTTGGAGCTGG
GGGATGTAACTTGGCACCATGGCTGGTGCTTGCACGGGAGTCCAGGGAAT
GAAAGGGAGGAGGAGAGGGTGGCTTTGACTGTGTGTTTCATGAGTGCTGA
CGCAAAGGTGATGGCGAGTGATGTGCTTTTCGTCCCCGACGAGGAAGATA
GCTTGTCCTACGAAGAGTGGGTTGGGGAGGTGGGCTTGGGAAACGTGGTC
GATCACAAGTTGACGCCCGTGGTGTGGCCGTGAACCTTGGCCCATATCGC
CGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTTCCAAGATTCCCTTT
TCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCCACACCGACTTGGGG
ACGGCGCCATTGGACACGAACGACTTTATCACTGCCTGGATCCCCCTGAC
GCATGTCCCGGCGGTGGAAGAGGGAGGAAGCCCGTTGCAGTTTTGCCAAG
GATGACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCC
AGGTTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCG
TGCGTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTT
GCAGGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGT
TCCATAAG
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Synonyms
Publications