jgi.p|Nanoce1779_2|578499, mRNA_1945 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578499
Unique Name	mRNA_1945
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1237
Alignment location	scaffold_4:411784..413291 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578585
Track	FilteredModels2
ProteinId	578499

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:411784..413291 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578499	gene_1945	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578499	mRNA_1945-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1945	CDS_1945	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:411784..413291+
coding sequence from alignment at scaffold_4:411784..413291+

mRNA sequence

>mRNA_1945 ID=mRNA_1945|Name=jgi.p|Nanoce1779_2|578499|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp
ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC
CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTACCGTGGTGGCCTT
GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA
CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG
CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT
GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTGCTTGC
GCAAATCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGTGGTGAGAGC
ATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCCCCACGCTCT
GTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAGGGGAAGGAG
ACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCGAAGAAGGGG
AAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGCAGAGGAAAC
CCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCAAGGAGCATC
TTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAATTGAAGGAC
TTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGAGGCGCAGGA
TAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGGCCGCGGAAG
TAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTATGTGAGGGAA
GAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTTGGACCTAAT
GGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGGCATCCTTGA
AGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTGGGTAAGGCG
GAACGGTTGGGGATAAAGGCAGTGCCGGCTGCGGCAGGTGATGCGTTTGA
CGGAGAGACGATGGAGATAAGTGAGATGATCGTTGGGAAAGAGGACGCGG
TGGTGGTGGAGGTGGCGGTGAAGGGGTATAGAATCGGCGATACGGTGGTG
AGGCGGGCGAGGGTGAAGGTCAGTGCCACTGAGGAGACGATGAAGAAGGC
TCAAGAGGAGGAGAAAGAGGAAGAGGAGAAGGGGGAGGAGAAGGAGGCGG
AGGCGGGGAGTTTTGAGGAGGAGGGGAAGCAGTAGAG

protein sequence of jgi.p|Nanoce1779_2|578499

>mRNA_1945-protein ID=mRNA_1945-protein|Name=jgi.p|Nanoce1779_2|578499|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MHRTPQAATAMLMCLCTVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALD
RVVQHQRVVSTGGLPTSTVRMMASSSSSSSSSSFSCLRKSRRTCSGAGAE
CGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGAEDGEEEE
AKKGKKGKDEEEEEAVSAEETQEEEEVVEEEEEAKEHLSPEEQEKAALKA
ELKDLEAALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLT
YVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVF
VGKAERLGIKAVPAAAGDAFDGETMEISEMIVGKEDAVVVEVAVKGYRIG
DTVVRRARVKVSATEETMKKAQEEEKEEEEKGEEKEAEAGSFEEEGKQ*

mRNA from alignment at scaffold_4:411784..413291+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1945 ID=mRNA_1945|Name=jgi.p|Nanoce1779_2|578499|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp|location=Sequence derived from alignment at scaffold_4:411784..413291+ (Nannochloropsis oceanica)
ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC
CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTACCGTGGTGGCCTT
GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA
CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG
CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT
GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTGCTTGC
GCAAATCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGTGGTGAGAGC
ATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCCCCACGCTCT
GTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAGGGGAAGGAG
ACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCGAAGAAGGGG
AAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGCAGAGGAAAC
CCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCAAGGAGCATC
TTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAATTGAAGGAC
TTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGAGGCGCAGGA
TAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGGCCGCGGAAG
TAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTATGTGAGGGAA
GAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTTGGACCTAAT
GGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGGCATCCTTGA
AGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTGGGTAAGGCG
GAACGGTTGGGGATAAAGGCAGTGCCGGCTGGTGAGTGAGGAAGGGAGGG
AAGGAGGAATGGATGGCGGGATATTTGTAAATGGCGGGAGGGGACAGAGC
CAGACGTGCGGTGATGTGGATGATGAATAGGATAATGATGCATGTATTGT
CTCAGACTATGGTCCATGCCGAAACTATCACCTTGGAGAACTGACACACA
CACACACCTACCCTCCCTCCCTCCCTCCCTTCCTCGCTCGACCTTCGAAT
GTACCTCTTCTCTCACCCTCTCTCTCCTTTGTACACATGAAAAACAACAC
AGCGGCAGGTGATGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGA
TCGTTGGGAAAGAGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTAT
AGAATCGGCGATACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCAC
TGAGGAGACGATGAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGA
AGGGGGAGGAGAAGGAGGCGGAGGCGGGGAGTTTTGAGGAGGAGGGGAAG
CAGTAGAG

Coding sequence (CDS) from alignment at scaffold_4:411784..413291+

>mRNA_1945 ID=mRNA_1945|Name=jgi.p|Nanoce1779_2|578499|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_4:411784..413291+ (Nannochloropsis oceanica)
ATGCATCGCACCCCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTAC
CGTGGTGGCCTTGTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCC
CGTCGCCTTCGACTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGAC
AGGGTCGTGCAGCACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAG
CACAGTCAGAATGATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
TCTCGTGCTTGCGCAAATCCCGACGCACTTGCAGCGGTGCCGGGGCAGAA
TGTGGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAG
GCCCCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAG
CAGGGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAA
GCGAAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATC
AGCAGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGG
CCAAGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCA
GAATTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGAC
CGAGGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTT
TGGCCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACC
TATGTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGT
GTTGGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATG
AGGCATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTC
GTGGGTAAGGCGGAACGGTTGGGGATAAAGGCAGTGCCGGCTGCGGCAGG
TGATGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGATCGTTGGGA
AAGAGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTATAGAATCGGC
GATACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCACTGAGGAGAC
GATGAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGAAGGGGGAGG
AGAAGGAGGCGGAGGCGGGGAGTTTTGAGGAGGAGGGGAAGCAGTAGATG
CATCGCACCCCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTACCGT
GGTGGCCTTGTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGT
CGCCTTCGACTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGG
GTCGTGCAGCACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCAC
AGTCAGAATGATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT
CGTGCTTGCGCAAATCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGT
GGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCC
CCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAG
GGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCG
AAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGC
AGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCA
AGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAA
TTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGA
GGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGG
CCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTAT
GTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTT
GGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGG
CATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTG
GGTAAGGCGGAACGGTTGGGGATAAAGGCAGTGCCGGCTGCGGCAGGTGA
TGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGATCGTTGGGAAAG
AGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTATAGAATCGGCGAT
ACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCACTGAGGAGACGAT
GAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGAAGGGGGAGGAGA
AGGAGGCGGAGGCGGGGAGTTTTGAGGAGGAGGGGAAGCAGTAG

Synonyms

Publications