jgi.p|Nanoce1779_2|578487, mRNA_1944 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578487
Unique Name	mRNA_1944
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1915
Alignment location	scaffold_4:408990..411384 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578573
Track	FilteredModels2
ProteinId	578487

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:408990..411384 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578487	gene_1944	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578487	mRNA_1944-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1944	CDS_1944	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:408990..411384-
coding sequence from alignment at scaffold_4:408990..411384-

mRNA sequence

>mRNA_1944 ID=mRNA_1944|Name=jgi.p|Nanoce1779_2|578487|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp
ACAGTCCGTGCAACCATGGGGGAACGGGGCATGCAGATTAAGGCGGACCT
AAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGGTCTGTGAGACGT
GTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAAGCAGCCGGCAAG
GCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAGGTGGCGTCCCGG
CGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGACGTGCGCAAAGA
TGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACCTACGGCCTACCC
GTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGCGTCGGGGGAGGG
TGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCGATACCAATAAGC
AATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAGGGCCACGCGGAT
TCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCGGTTGTCTCGGGC
TCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCACGTTTTATGCCA
AGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTTGCACGAAATGCCC
ACCTCTCGAAATGACCCCCTTGCCAACCAAAATATCAAAGACCGTTTCTA
CGGGCAAGATGATCCAGTGGCTCAAAAGATGCTTGGCCGCGTGGCGGCAA
AGGATGCGGAAGACCTCGCTCCTCTGATCCCTCCCTCCGACCCCAGCATT
ATGACGCTCATGGTGGGAGGGATGGAGGGTGGGTCCATCACGGAGATGGA
ATTGCGGGATGCGTTCTATGCGTTTGGGGAGCTGGCGAGTGTGAGGTTGA
TCCATGCTAAATTTATCGCGTTCGTGGAGTATACGACAAGGGAAGCAGCA
GAAGCAGCAGCCAAGGCCCTCCACAACAACCTCACTTTGCAGGGACTCCG
CCTTCGAGTCACCTGGGCGACGCGGCCCGCGGGTGGAGCGCTTGCCAACT
CTAGCACCAGCAGCGGCAGTTTTGCCATGTTTGGTGGTGGTGGGGGTGGG
GGTAGCGTTTCTGCTGCTGCTGCTGCTGGTGGTGGTGCCGGTGGTGGTGA
TGGTAGCATGCCTTCTCCTCCGAGCACCTTCCCCCCTCTCCCCCCTCCTC
AATATATGCCTGCCCTACCCCCTTCCAACTGGACACCAGGCACCATTCCT
CCGCCCCCTCCCGGCGGTCCTCCTCTTATGCGCCATCCCCCTCAACAGTA
CATGCAGCAGGGAGGGGCCCTCTCCCTTCCTCCTCCTCAGCAGGTAGATT
TGAAGTACAGATAGGAGAGATCACATAGGAGAGATCACATAGGAGAGAGG
AGGGGAATATTTCCATGAGGATATGATGATTTACAACCAGCTACTCTGAA
TCGAGCTCTTAGTCGGCTTAACAACACCGTGTAGTCAATTCAAGATATTT
CTAACTACTAGATGGGCTGATCCTCACACAGACACGCACTTTCCCACACT
CGACTCCCTTTCCTCTCCACACCAGCTAGACTGAATCTTTCACTCACTCA
CTCATTATTCACCTACTCACTCACTCCATCCCACAGCCCTACTACCCTTC
CATGGACCCTCAGCGCATGGGAGCTCGGCCACCCCCCCCTCCCCCCACAC
CAGGCGCCCCCTCGCGACGATAATTAAGATCAAGGCAAGAACCAAAATAT
AACTCCGATGCCTGTTTTTGGCGATAGAAACAGCAGGGGAAAAGATGCAG
TGTGTGTACATAGAATCGAAAATAAATAAAATCATGGCAAGTTTCAGGGT
TGGCACACTTGCATGTGAGTAGATAGCCTTTGAGTTGGATGTGCCGAAGA
CTAGGAAGGGAAAGCAGCTCGTACAGCGTTGGGGATGAAACCGAAAATGA
AAGTATACAGATAAA

protein sequence of jgi.p|Nanoce1779_2|578487

>mRNA_1944-protein ID=mRNA_1944-protein|Name=jgi.p|Nanoce1779_2|578487|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKIC
DRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRD
AVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKA
QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRND
PLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMV
GGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAK
ALHNNLTLQGLRLRVTWATRPAGGALANSSTSSGSFAMFGGGGGGGSVSA
AAAAGGGAGGGDGSMPSPPSTFPPLPPPQYMPALPPSNWTPGTIPPPPPG
GPPLMRHPPQQYMQQGGALSLPPPQQVDLKYR*

mRNA from alignment at scaffold_4:408990..411384-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1944 ID=mRNA_1944|Name=jgi.p|Nanoce1779_2|578487|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp|location=Sequence derived from alignment at scaffold_4:408990..411384- (Nannochloropsis oceanica)
ACAGTCCGTGCAACCATGGGGGAACGGGGCATGCAGATTAAGGCGGACCT
AAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGGTCTGTGAGACGT
GTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAAGCAGCCGGCAAG
GCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAGGTGGCGTCCCGG
CGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGACGTGCGCAAAGA
TGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACCTACGGCCTACCC
GTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGCGTCGGGGGAGGG
TGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCGATACCAATAAGC
AATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAGGGCCACGCGGAT
TCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCGGTTGTCTCGGGC
TCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCACGTTTTATGCCA
AGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTTGTAAGTGGATGTA
TTGGGAGGTAAAAGGGGGAGAGTGCGATATTGTGCGTGATGGGCCGGAGC
CTGGTGGAGAGGGATGGAGGATTATTTGTCGGTTTGTGCCTACCCCTCGC
GCTCGTGTATATCCCCTTTCTTTTGTGCTTCTCAACATACCTGCACCTAA
GACATGCAAGTTGGCCATGATTATAAATTTTTATCATTTGGCGCGGGGCC
GGGGACTTCTTTCGGCTTGAGTCACAGCCTTGTCGCCGAGGCTGGCGATT
CGCTGGGTGACCTTCTCCTTCGTGTGCCCGGCGCTCCGCATGGGGACTTT
TGGTCCTCGCTGGGGAATGTTATGCGACCATACTCTCTGAGCCTTTTAGA
GCATACTCTCGTTTCCTCTTCATGTATTCTTCGTTTCCTGGTGTGGCTCC
TCATGAAATTCTCACCTCCCTTCCCCTTCCTTCCCTCCCCCTCCTTCCTT
CCCTTTTCCCCAAATAGGCACGAAATGCCCACCTCTCGAAATGACCCCCT
TGCCAACCAAAATATCAAAGACCGTTTCTACGGGCAAGATGATCCAGTGG
CTCAAAAGATGCTTGGCCGCGTGGCGGCAAAGGATGCGGAAGACCTCGCT
CCTCTGATCCCTCCCTCCGACCCCAGCATTATGACGCTCATGGTGGGAGG
GATGGAGGGTGGGTCCATCACGGAGATGGAATTGCGGGATGCGTTCTATG
CGTTTGGGGAGCTGGCGAGTGTGAGGTTGATCCATGCTAAATTTATCGCG
TTCGTGGAGTATACGACAAGGGAAGCAGCAGAAGCAGCAGCCAAGGCCCT
CCACAACAACCTCACTTTGCAGGGACTCCGCCTTCGAGTCACCTGGGCGA
CGCGGCCCGCGGGTGGAGCGCTTGCCAACTCTAGCACCAGCAGCGGCAGT
TTTGCCATGTTTGGTGGTGGTGGGGGTGGGGGTAGCGTTTCTGCTGCTGC
TGCTGCTGGTGGTGGTGCCGGTGGTGGTGATGGTAGCATGCCTTCTCCTC
CGAGCACCTTCCCCCCTCTCCCCCCTCCTCAATATATGCCTGCCCTACCC
CCTTCCAACTGGACACCAGGCACCATTCCTCCGCCCCCTCCCGGCGGTCC
TCCTCTTATGCGCCATCCCCCTCAACAGTACATGCAGCAGGGAGGGGCCC
TCTCCCTTCCTCCTCCTCAGCAGGTAGATTTGAAGTACAGATAGGAGAGA
TCACATAGGAGAGATCACATAGGAGAGAGGAGGGGAATATTTCCATGAGG
ATATGATGATTTACAACCAGCTACTCTGAATCGAGCTCTTAGTCGGCTTA
ACAACACCGTGTAGTCAATTCAAGATATTTCTAACTACTAGATGGGCTGA
TCCTCACACAGACACGCACTTTCCCACACTCGACTCCCTTTCCTCTCCAC
ACCAGCTAGACTGAATCTTTCACTCACTCACTCATTATTCACCTACTCAC
TCACTCCATCCCACAGCCCTACTACCCTTCCATGGACCCTCAGCGCATGG
GAGCTCGGCCACCCCCCCCTCCCCCCACACCAGGCGCCCCCTCGCGACGA
TAATTAAGATCAAGGCAAGAACCAAAATATAACTCCGATGCCTGTTTTTG
GCGATAGAAACAGCAGGGGAAAAGATGCAGTGTGTGTACATAGAATCGAA
AATAAATAAAATCATGGCAAGTTTCAGGGTTGGCACACTTGCATGTGAGT
AGATAGCCTTTGAGTTGGATGTGCCGAAGACTAGGAAGGGAAAGCAGCTC
GTACAGCGTTGGGGATGAAACCGAAAATGAAAGTATACAGATAAA

Coding sequence (CDS) from alignment at scaffold_4:408990..411384-

>mRNA_1944 ID=mRNA_1944|Name=jgi.p|Nanoce1779_2|578487|organism=Nannochloropsis oceanica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_4:408990..411384- (Nannochloropsis oceanica)
GCACGAAATGCCCACCTCTCGAAATGACCCCCTTGCCAACCAAAATATCA
AAGACCGTTTCTACGGGCAAGATGATCCAGTGGCTCAAAAGATGCTTGGC
CGCGTGGCGGCAAAGGATGCGGAAGACCTCGCTCCTCTGATCCCTCCCTC
CGACCCCAGCATTATGACGCTCATGGTGGGAGGGATGGAGGGTGGGTCCA
TCACGGAGATGGAATTGCGGGATGCGTTCTATGCGTTTGGGGAGCTGGCG
AGTGTGAGGTTGATCCATGCTAAATTTATCGCGTTCGTGGAGTATACGAC
AAGGGAAGCAGCAGAAGCAGCAGCCAAGGCCCTCCACAACAACCTCACTT
TGCAGGGACTCCGCCTTCGAGTCACCTGGGCGACGCGGCCCGCGGGTGGA
GCGCTTGCCAACTCTAGCACCAGCAGCGGCAGTTTTGCCATGTTTGGTGG
TGGTGGGGGTGGGGGTAGCGTTTCTGCTGCTGCTGCTGCTGGTGGTGGTG
CCGGTGGTGGTGATGGTAGCATGCCTTCTCCTCCGAGCACCTTCCCCCCT
CTCCCCCCTCCTCAATATATGCCTGCCCTACCCCCTTCCAACTGGACACC
AGGCACCATTCCTCCGCCCCCTCCCGGCGGTCCTCCTCTTATGCGCCATC
CCCCTCAACAGTACATGCAGCAGGGAGGGGCCCTCTCCCTTCCTCCTCCT
CAGCAGGTAGATTTGAAGTACAGATAGATGGGGGAACGGGGCATGCAGAT
TAAGGCGGACCTAAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGG
TCTGTGAGACGTGTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAA
GCAGCCGGCAAGGCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAG
GTGGCGTCCCGGCGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGA
CGTGCGCAAAGATGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACC
TACGGCCTACCCGTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGC
GTCGGGGGAGGGTGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCG
ATACCAATAAGCAATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAG
GGCCACGCGGATTCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCG
GTTGTCTCGGGCTCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCA
CGTTTTATGCCAAGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTTG
CACGAAATGCCCACCTCTCGAAATGACCCCCTTGCCAACCAAAATATCAA
AGACCGTTTCTACGGGCAAGATGATCCAGTGGCTCAAAAGATGCTTGGCC
GCGTGGCGGCAAAGGATGCGGAAGACCTCGCTCCTCTGATCCCTCCCTCC
GACCCCAGCATTATGACGCTCATGGTGGGAGGGATGGAGGGTGGGTCCAT
CACGGAGATGGAATTGCGGGATGCGTTCTATGCGTTTGGGGAGCTGGCGA
GTGTGAGGTTGATCCATGCTAAATTTATCGCGTTCGTGGAGTATACGACA
AGGGAAGCAGCAGAAGCAGCAGCCAAGGCCCTCCACAACAACCTCACTTT
GCAGGGACTCCGCCTTCGAGTCACCTGGGCGACGCGGCCCGCGGGTGGAG
CGCTTGCCAACTCTAGCACCAGCAGCGGCAGTTTTGCCATGTTTGGTGGT
GGTGGGGGTGGGGGTAGCGTTTCTGCTGCTGCTGCTGCTGGTGGTGGTGC
CGGTGGTGGTGATGGTAGCATGCCTTCTCCTCCGAGCACCTTCCCCCCTC
TCCCCCCTCCTCAATATATGCCTGCCCTACCCCCTTCCAACTGGACACCA
GGCACCATTCCTCCGCCCCCTCCCGGCGGTCCTCCTCTTATGCGCCATCC
CCCTCAACAGTACATGCAGCAGGGAGGGGCCCTCTCCCTTCCTCCTCCTC
AGCAGGTAGATTTGAAGTACAGATAGATGGGGGAACGGGGCATGCAGATT
AAGGCGGACCTAAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGGT
CTGTGAGACGTGTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAAG
CAGCCGGCAAGGCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAGG
TGGCGTCCCGGCGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGAC
GTGCGCAAAGATGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACCT
ACGGCCTACCCGTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGCG
TCGGGGGAGGGTGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCGA
TACCAATAAGCAATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAGG
GCCACGCGGATTCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCGG
TTGTCTCGGGCTCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCAC
GTTTTATGCCAAGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTT

Synonyms

Publications